Wall clock time and date at job start Tue Mar 31 2020 05:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47549 * 2 1 4 4 C 1.53010 * 109.46904 * 240.00114 * 2 1 3 5 5 C 1.50695 * 109.46915 * 60.00045 * 4 2 1 6 6 H 1.08003 * 120.00291 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99708 * 179.97438 * 5 4 2 8 8 N 1.31506 * 119.99891 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99780 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47302 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47288 * 120.00112 * 9 7 5 12 12 H 1.48504 * 109.47442 * 240.00079 * 9 7 5 13 13 C 1.53002 * 109.47502 * 120.00285 * 2 1 3 14 14 N 1.46900 * 109.46667 * 299.99560 * 13 2 1 15 15 C 1.46903 * 110.99982 * 179.97438 * 14 13 2 16 16 H 1.09004 * 112.92324 * 26.82394 * 15 14 13 17 17 C 1.53869 * 113.64042 * 255.50097 * 15 14 13 18 18 C 1.53857 * 87.25086 * 220.43155 * 17 15 14 19 19 C 1.53330 * 86.94297 * 25.04875 * 18 17 15 20 20 C 1.52830 * 113.61246 * 220.02378 * 19 18 17 21 21 C 1.53268 * 108.87563 * 282.21455 * 20 19 18 22 22 O 1.42893 * 109.33202 * 304.68925 * 21 20 19 23 23 C 1.42902 * 114.35649 * 62.99709 * 22 21 20 24 24 C 1.52825 * 113.61611 * 89.61444 * 19 18 17 25 25 H 1.09005 * 109.47165 * 299.99908 * 1 2 3 26 26 H 1.08998 * 109.47496 * 59.99217 * 1 2 3 27 27 H 1.08997 * 109.47642 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47572 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46924 * 300.00259 * 3 2 1 30 30 H 1.08997 * 109.47083 * 59.99702 * 3 2 1 31 31 H 1.09000 * 109.46931 * 180.02562 * 4 2 1 32 32 H 1.08997 * 109.46737 * 300.00268 * 4 2 1 33 33 H 0.97001 * 119.99875 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.47055 * 179.97438 * 13 2 1 35 35 H 1.08997 * 109.47045 * 59.99177 * 13 2 1 36 36 H 1.00906 * 111.00100 * 56.04723 * 14 13 2 37 37 H 1.09002 * 113.60438 * 105.82073 * 17 15 14 38 38 H 1.09003 * 113.60156 * 335.04200 * 17 15 14 39 39 H 1.08995 * 113.64074 * 139.56006 * 18 17 15 40 40 H 1.09000 * 113.63954 * 270.44730 * 18 17 15 41 41 H 1.08999 * 109.57099 * 42.03230 * 20 19 18 42 42 H 1.09001 * 109.57250 * 162.39903 * 20 19 18 43 43 H 1.09003 * 109.49325 * 184.73351 * 21 20 19 44 44 H 1.08998 * 109.49630 * 64.65024 * 21 20 19 45 45 H 1.08999 * 109.49562 * 177.05341 * 23 22 21 46 46 H 1.09005 * 109.52127 * 56.97861 * 23 22 21 47 47 H 1.08999 * 109.56945 * 197.60408 * 24 19 18 48 48 H 1.08996 * 109.56885 * 317.96796 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2494 5 6 1.5375 -0.0108 -2.4797 6 1 0.9170 0.8676 -2.3806 7 6 1.8710 -0.4816 -3.7320 8 7 2.6270 -1.5508 -3.8527 9 14 1.2477 0.3986 -5.2572 10 1 0.4224 1.5651 -4.8529 11 1 2.4024 0.8663 -6.0655 12 1 0.4234 -0.5352 -6.0656 13 6 2.0400 -0.7213 1.2492 14 7 1.5504 -0.0287 2.4486 15 6 2.0210 -0.6952 3.6703 16 1 2.9570 -1.2349 3.5259 17 6 0.9347 -1.5229 4.3791 18 6 1.4980 -0.9878 5.7071 19 6 2.0188 0.2126 4.9077 20 6 3.4122 0.6737 5.3337 21 6 3.2921 1.4833 6.6295 22 8 2.3686 2.5559 6.4332 23 6 1.0335 2.1382 6.1414 24 6 1.0214 1.3669 4.8169 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 3.1299 -0.7217 -1.2491 32 1 1.6765 -1.7489 -1.2493 33 1 2.8620 -1.8818 -4.7337 34 1 3.1300 -0.7217 1.2489 35 1 1.6766 -1.7489 1.2492 36 1 0.5438 0.0414 2.4402 37 1 1.0560 -2.5991 4.2557 38 1 -0.0796 -1.1844 4.1673 39 1 0.7293 -0.7278 6.4348 40 1 2.2877 -1.6094 6.1290 41 1 4.0482 -0.1951 5.5036 42 1 3.8451 1.2979 4.5520 43 1 4.2681 1.8880 6.8974 44 1 2.9337 0.8367 7.4305 45 1 0.3885 3.0130 6.0589 46 1 0.6707 1.4929 6.9415 47 1 1.3076 2.0336 4.0035 48 1 0.0220 0.9723 4.6335 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367901749.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:12 Heat of formation + Delta-G solvation = -51.618415 kcal Electronic energy + Delta-G solvation = -23417.643425 eV Core-core repulsion = 20278.996879 eV Total energy + Delta-G solvation = -3138.646547 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.76938 -37.95759 -36.87517 -33.18859 -31.86041 -31.28894 -30.71347 -26.99428 -26.32013 -25.80338 -24.67726 -23.72554 -23.67919 -22.08251 -21.17036 -18.50975 -17.70437 -16.43627 -16.15984 -16.09703 -15.68534 -15.08492 -14.74020 -14.52181 -14.24192 -14.02555 -13.60342 -13.24566 -13.10664 -12.74827 -12.47474 -12.34122 -12.00424 -11.95527 -11.67139 -11.60005 -11.33736 -10.99756 -10.97888 -10.87735 -10.77415 -10.71291 -10.49745 -10.41652 -10.23988 -10.08425 -10.00904 -9.66309 -9.44302 -8.97953 -8.78028 -8.30978 -7.95580 -5.95330 -3.95226 3.33036 3.40943 3.44509 3.77893 4.30427 4.41350 4.49295 4.50384 4.65165 4.86149 4.95218 4.99534 5.07323 5.24914 5.32389 5.40519 5.41051 5.50791 5.54502 5.55375 5.61419 5.72396 5.77934 5.81382 5.84102 5.97609 5.98130 6.04071 6.14625 6.27311 6.32660 6.33984 6.44908 6.53300 6.68488 6.82003 6.85024 7.10878 7.22874 7.27404 7.28859 7.45739 7.70354 7.74284 7.87538 8.05322 8.49967 9.10515 9.67628 11.16425 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.031737 B = 0.003449 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.045525 B = 8117.114182 C = 8340.768286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.058 4.058 3 C -0.115 4.115 4 C 0.034 3.966 5 C -0.506 4.506 6 H 0.059 0.941 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.070 3.930 14 N -0.671 5.671 15 C 0.080 3.920 16 H 0.094 0.906 17 C -0.170 4.170 18 C -0.134 4.134 19 C -0.069 4.069 20 C -0.137 4.137 21 C 0.064 3.936 22 O -0.384 6.384 23 C 0.061 3.939 24 C -0.122 4.122 25 H 0.032 0.968 26 H 0.063 0.937 27 H 0.039 0.961 28 H 0.038 0.962 29 H 0.053 0.947 30 H 0.042 0.958 31 H 0.014 0.986 32 H 0.012 0.988 33 H 0.258 0.742 34 H 0.064 0.936 35 H 0.022 0.978 36 H 0.339 0.661 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.045 0.955 45 H 0.090 0.910 46 H 0.044 0.956 47 H 0.088 0.912 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.261 2.627 21.527 21.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.059 4.059 3 C -0.172 4.172 4 C -0.004 4.004 5 C -0.544 4.544 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.058 4.058 14 N -0.302 5.302 15 C -0.031 4.031 16 H 0.112 0.888 17 C -0.210 4.210 18 C -0.172 4.172 19 C -0.070 4.070 20 C -0.175 4.175 21 C -0.013 4.013 22 O -0.303 6.303 23 C -0.015 4.015 24 C -0.160 4.160 25 H 0.051 0.949 26 H 0.082 0.918 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.033 0.967 32 H 0.030 0.970 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.040 0.960 36 H 0.160 0.840 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.107 0.893 44 H 0.064 0.936 45 H 0.108 0.892 46 H 0.062 0.938 47 H 0.107 0.893 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.625 3.181 21.379 21.675 hybrid contribution -0.882 -0.927 -1.022 1.637 sum -2.506 2.254 20.357 20.634 Atomic orbital electron populations 1.21760 0.96176 1.00270 1.00334 1.20625 0.94634 0.96123 0.94485 1.21588 0.99741 0.95806 1.00111 1.19124 0.96078 0.94945 0.90246 1.21284 1.30651 1.11836 0.90617 0.92246 1.25017 0.95427 0.95122 0.99063 1.69975 1.37392 1.23274 1.23148 0.86616 0.78622 0.79729 0.83515 1.19764 1.21157 1.21210 1.22120 0.99574 0.94693 0.89420 1.60448 1.16137 1.52756 1.00814 1.23007 0.97713 0.93145 0.89270 0.88811 1.23656 0.99532 1.00385 0.97384 1.22852 1.00446 0.97590 0.96327 1.21731 0.95095 0.94107 0.96062 1.22089 0.96621 1.00335 0.98468 1.22558 0.93289 0.89325 0.96114 1.87887 1.18988 1.32238 1.91207 1.22625 0.83902 0.99150 0.95845 1.21791 0.98553 0.97015 0.98592 0.94910 0.91759 0.94176 0.94234 0.92785 0.93900 0.96737 0.96993 0.93246 0.91729 0.95971 0.84046 0.91736 0.90191 0.91654 0.90298 0.91242 0.90466 0.89305 0.93623 0.89163 0.93761 0.89341 0.91355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 7.89 37.15 0.29 -2.07 16 2 C -0.06 -1.15 0.60 -154.51 -0.09 -1.25 16 3 C -0.12 -2.24 8.06 37.16 0.30 -1.94 16 4 C 0.03 0.85 4.04 -27.88 -0.11 0.73 16 5 C -0.51 -13.86 7.65 -34.44 -0.26 -14.13 16 6 H 0.06 1.59 5.68 -52.48 -0.30 1.29 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.95 13.29 55.43 0.74 -26.22 16 9 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 13 C 0.07 1.20 4.51 -3.82 -0.02 1.18 16 14 N -0.67 -9.31 4.88 -105.98 -0.52 -9.82 16 15 C 0.08 0.94 3.62 -67.01 -0.24 0.70 16 16 H 0.09 1.17 7.86 -51.93 -0.41 0.76 16 17 C -0.17 -1.74 7.36 -25.83 -0.19 -1.93 16 18 C -0.13 -1.21 7.04 -26.11 -0.18 -1.39 16 19 C -0.07 -0.70 0.75 -154.27 -0.12 -0.82 16 20 C -0.14 -1.38 5.34 -26.68 -0.14 -1.53 16 21 C 0.06 0.61 6.78 37.30 0.25 0.86 16 22 O -0.38 -4.47 10.72 -35.23 -0.38 -4.85 16 23 C 0.06 0.60 6.78 37.30 0.25 0.85 16 24 C -0.12 -1.26 4.43 -26.68 -0.12 -1.38 16 25 H 0.03 0.51 6.57 -51.93 -0.34 0.17 16 26 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 1.13 6.62 -51.93 -0.34 0.78 16 30 H 0.04 0.75 7.60 -51.93 -0.39 0.35 16 31 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.06 1.15 8.13 -51.93 -0.42 0.73 16 35 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.34 4.56 6.08 -39.29 -0.24 4.32 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.81 7.33 -51.93 -0.38 0.43 16 39 H 0.06 0.55 7.63 -51.93 -0.40 0.15 16 40 H 0.08 0.66 8.03 -51.93 -0.42 0.25 16 41 H 0.07 0.62 8.04 -51.93 -0.42 0.20 16 42 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.05 0.38 8.12 -51.93 -0.42 -0.04 16 45 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.04 0.38 7.68 -51.93 -0.40 -0.02 16 47 H 0.09 1.10 7.93 -51.93 -0.41 0.69 16 48 H 0.07 0.66 7.35 -51.93 -0.38 0.28 16 LS Contribution 358.91 15.07 5.41 5.41 Total: -1.00 -29.30 358.91 -9.20 -38.50 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -8.96 Total: 0.99 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: -0.48 Total: -20.67 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.22 Total: -36.04 kcal Atomic # 8 Polarization: -4.47 SS G_CDS: -0.38 Total: -4.85 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.30 -9.20 -38.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367901749.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.115 kcal (2) G-P(sol) polarization free energy of solvation -29.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds