Wall clock time and date at job start Tue Mar 31 2020 05:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47549 * 2 1 4 4 C 1.53010 * 109.46904 * 240.00114 * 2 1 3 5 5 C 1.50695 * 109.46915 * 60.00045 * 4 2 1 6 6 H 1.08003 * 120.00291 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99708 * 179.97438 * 5 4 2 8 8 N 1.31506 * 119.99891 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99780 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47302 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47288 * 120.00112 * 9 7 5 12 12 H 1.48504 * 109.47442 * 240.00079 * 9 7 5 13 13 C 1.53002 * 109.47502 * 120.00285 * 2 1 3 14 14 N 1.46900 * 109.46667 * 299.99560 * 13 2 1 15 15 C 1.46903 * 110.99982 * 179.97438 * 14 13 2 16 16 H 1.09004 * 112.92324 * 26.82394 * 15 14 13 17 17 C 1.53869 * 113.64042 * 255.50097 * 15 14 13 18 18 C 1.53857 * 87.25086 * 220.43155 * 17 15 14 19 19 C 1.53330 * 86.94297 * 25.04875 * 18 17 15 20 20 C 1.52830 * 113.61246 * 220.02378 * 19 18 17 21 21 C 1.53268 * 108.87563 * 282.21455 * 20 19 18 22 22 O 1.42893 * 109.33202 * 304.68925 * 21 20 19 23 23 C 1.42902 * 114.35649 * 62.99709 * 22 21 20 24 24 C 1.52825 * 113.61611 * 89.61444 * 19 18 17 25 25 H 1.09005 * 109.47165 * 299.99908 * 1 2 3 26 26 H 1.08998 * 109.47496 * 59.99217 * 1 2 3 27 27 H 1.08997 * 109.47642 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47572 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46924 * 300.00259 * 3 2 1 30 30 H 1.08997 * 109.47083 * 59.99702 * 3 2 1 31 31 H 1.09000 * 109.46931 * 180.02562 * 4 2 1 32 32 H 1.08997 * 109.46737 * 300.00268 * 4 2 1 33 33 H 0.97001 * 119.99875 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.47055 * 179.97438 * 13 2 1 35 35 H 1.08997 * 109.47045 * 59.99177 * 13 2 1 36 36 H 1.00906 * 111.00100 * 56.04723 * 14 13 2 37 37 H 1.09002 * 113.60438 * 105.82073 * 17 15 14 38 38 H 1.09003 * 113.60156 * 335.04200 * 17 15 14 39 39 H 1.08995 * 113.64074 * 139.56006 * 18 17 15 40 40 H 1.09000 * 113.63954 * 270.44730 * 18 17 15 41 41 H 1.08999 * 109.57099 * 42.03230 * 20 19 18 42 42 H 1.09001 * 109.57250 * 162.39903 * 20 19 18 43 43 H 1.09003 * 109.49325 * 184.73351 * 21 20 19 44 44 H 1.08998 * 109.49630 * 64.65024 * 21 20 19 45 45 H 1.08999 * 109.49562 * 177.05341 * 23 22 21 46 46 H 1.09005 * 109.52127 * 56.97861 * 23 22 21 47 47 H 1.08999 * 109.56945 * 197.60408 * 24 19 18 48 48 H 1.08996 * 109.56885 * 317.96796 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2494 5 6 1.5375 -0.0108 -2.4797 6 1 0.9170 0.8676 -2.3806 7 6 1.8710 -0.4816 -3.7320 8 7 2.6270 -1.5508 -3.8527 9 14 1.2477 0.3986 -5.2572 10 1 0.4224 1.5651 -4.8529 11 1 2.4024 0.8663 -6.0655 12 1 0.4234 -0.5352 -6.0656 13 6 2.0400 -0.7213 1.2492 14 7 1.5504 -0.0287 2.4486 15 6 2.0210 -0.6952 3.6703 16 1 2.9570 -1.2349 3.5259 17 6 0.9347 -1.5229 4.3791 18 6 1.4980 -0.9878 5.7071 19 6 2.0188 0.2126 4.9077 20 6 3.4122 0.6737 5.3337 21 6 3.2921 1.4833 6.6295 22 8 2.3686 2.5559 6.4332 23 6 1.0335 2.1382 6.1414 24 6 1.0214 1.3669 4.8169 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 3.1299 -0.7217 -1.2491 32 1 1.6765 -1.7489 -1.2493 33 1 2.8620 -1.8818 -4.7337 34 1 3.1300 -0.7217 1.2489 35 1 1.6766 -1.7489 1.2492 36 1 0.5438 0.0414 2.4402 37 1 1.0560 -2.5991 4.2557 38 1 -0.0796 -1.1844 4.1673 39 1 0.7293 -0.7278 6.4348 40 1 2.2877 -1.6094 6.1290 41 1 4.0482 -0.1951 5.5036 42 1 3.8451 1.2979 4.5520 43 1 4.2681 1.8880 6.8974 44 1 2.9337 0.8367 7.4305 45 1 0.3885 3.0130 6.0589 46 1 0.6707 1.4929 6.9415 47 1 1.3076 2.0336 4.0035 48 1 0.0220 0.9723 4.6335 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367901749.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:11 Heat of formation + Delta-G solvation = -68.190583 kcal Electronic energy + Delta-G solvation = -23418.362048 eV Core-core repulsion = 20278.996879 eV Total energy + Delta-G solvation = -3139.365170 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.61522 -39.13370 -38.12899 -34.94868 -33.45516 -32.07568 -31.58066 -28.98788 -27.89707 -27.13945 -25.62456 -25.03062 -24.50641 -23.59140 -22.02685 -19.73753 -18.93735 -18.33910 -17.30265 -16.91682 -16.72947 -16.36839 -15.97343 -15.74303 -15.38187 -15.17743 -14.92014 -14.56420 -14.33255 -14.12421 -13.89750 -13.62204 -13.28686 -13.10883 -12.94031 -12.73313 -12.68958 -12.43808 -12.36227 -12.26156 -12.17570 -12.11438 -11.93629 -11.74783 -11.53328 -11.38919 -11.21419 -10.87864 -10.78650 -10.70426 -10.51728 -10.20030 -9.09388 -8.14638 -6.21590 1.39510 1.40662 1.52838 2.43291 3.05969 3.19391 3.28557 3.57835 3.68418 3.81925 3.97608 4.15332 4.17660 4.20319 4.29273 4.31988 4.38118 4.49797 4.59741 4.62581 4.72494 4.76412 4.79924 4.82113 4.84910 4.89747 4.96476 5.02273 5.05690 5.08032 5.18823 5.20483 5.21531 5.24924 5.32925 5.50472 5.51515 5.53719 5.58392 5.60419 5.67198 5.87721 5.92728 6.20306 6.37832 6.38195 6.60855 6.93896 7.45872 8.97991 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.031737 B = 0.003449 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.045525 B = 8117.114182 C = 8340.768286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.055 4.055 3 C -0.105 4.105 4 C 0.040 3.960 5 C -0.513 4.513 6 H 0.066 0.934 7 C -0.005 4.005 8 N -0.938 5.938 9 Si 0.956 3.044 10 H -0.261 1.261 11 H -0.283 1.283 12 H -0.281 1.281 13 C 0.085 3.915 14 N -0.667 5.667 15 C 0.068 3.932 16 H 0.084 0.916 17 C -0.166 4.166 18 C -0.121 4.121 19 C -0.066 4.066 20 C -0.137 4.137 21 C 0.063 3.937 22 O -0.408 6.408 23 C 0.060 3.940 24 C -0.119 4.119 25 H 0.067 0.933 26 H 0.045 0.955 27 H 0.036 0.964 28 H 0.027 0.973 29 H 0.037 0.963 30 H 0.066 0.934 31 H -0.018 1.018 32 H -0.017 1.017 33 H 0.259 0.741 34 H 0.051 0.949 35 H 0.015 0.985 36 H 0.344 0.656 37 H 0.063 0.937 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.053 0.947 43 H 0.097 0.903 44 H 0.062 0.938 45 H 0.098 0.902 46 H 0.060 0.940 47 H 0.065 0.935 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.682 3.424 23.312 23.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.055 4.055 3 C -0.162 4.162 4 C 0.003 3.997 5 C -0.551 4.551 6 H 0.084 0.916 7 C -0.201 4.201 8 N -0.580 5.580 9 Si 0.782 3.218 10 H -0.184 1.184 11 H -0.209 1.209 12 H -0.207 1.207 13 C -0.044 4.044 14 N -0.298 5.298 15 C -0.043 4.043 16 H 0.102 0.898 17 C -0.205 4.205 18 C -0.159 4.159 19 C -0.067 4.067 20 C -0.174 4.174 21 C -0.013 4.013 22 O -0.327 6.327 23 C -0.016 4.016 24 C -0.157 4.157 25 H 0.086 0.914 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.046 0.954 29 H 0.056 0.944 30 H 0.085 0.915 31 H 0.000 1.000 32 H 0.002 0.998 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.034 0.966 36 H 0.165 0.835 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.072 0.928 43 H 0.115 0.885 44 H 0.080 0.920 45 H 0.116 0.884 46 H 0.079 0.921 47 H 0.083 0.917 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.056 3.988 23.186 23.724 hybrid contribution -0.396 -1.196 -1.544 1.993 sum -3.452 2.792 21.642 22.093 Atomic orbital electron populations 1.21663 0.94623 1.00351 1.01129 1.20488 0.95819 0.95941 0.93245 1.21481 0.98927 0.95405 1.00410 1.19006 0.93925 0.93978 0.92832 1.21655 1.30157 1.11844 0.91461 0.91610 1.25922 0.95713 0.95904 1.02591 1.70114 1.38918 1.24999 1.23962 0.85526 0.78137 0.78826 0.79356 1.18442 1.20880 1.20742 1.21783 0.98656 0.94200 0.89752 1.60394 1.16412 1.52613 1.00333 1.23148 0.98057 0.94318 0.88784 0.89768 1.23616 0.99097 1.00047 0.97719 1.22803 1.00812 0.96404 0.95859 1.21715 0.95330 0.94427 0.95207 1.22078 0.96642 1.00478 0.98249 1.22658 0.93568 0.89129 0.95968 1.87861 1.19991 1.33530 1.91309 1.22725 0.83365 0.99760 0.95758 1.21745 0.98919 0.96629 0.98359 0.91428 0.93546 0.94465 0.95408 0.94387 0.91462 0.99994 0.99832 0.93177 0.93082 0.96635 0.83482 0.91853 0.89667 0.90235 0.89362 0.90174 0.92828 0.88498 0.91994 0.88380 0.92143 0.91662 0.90351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.32 7.89 71.98 0.57 -3.75 16 2 C -0.05 -2.18 0.60 -52.18 -0.03 -2.21 16 3 C -0.10 -4.06 8.06 71.98 0.58 -3.48 16 4 C 0.04 2.11 4.04 29.85 0.12 2.23 16 5 C -0.51 -28.67 7.65 25.60 0.20 -28.47 16 6 H 0.07 3.53 5.68 -2.91 -0.02 3.52 16 7 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 8 N -0.94 -57.86 13.29 21.45 0.28 -57.58 16 9 Si 0.96 44.80 29.54 68.60 2.03 46.83 16 10 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 C 0.09 2.93 4.51 86.30 0.39 3.31 16 14 N -0.67 -17.74 4.88 -489.22 -2.39 -20.12 16 15 C 0.07 1.50 3.62 45.37 0.16 1.67 16 16 H 0.08 2.05 7.86 -2.38 -0.02 2.03 16 17 C -0.17 -2.99 7.36 31.18 0.23 -2.76 16 18 C -0.12 -1.80 7.04 30.99 0.22 -1.58 16 19 C -0.07 -1.21 0.75 -52.03 -0.04 -1.25 16 20 C -0.14 -2.56 5.34 30.63 0.16 -2.40 16 21 C 0.06 1.07 6.78 72.07 0.49 1.55 16 22 O -0.41 -8.72 10.72 -148.98 -1.60 -10.31 16 23 C 0.06 1.02 6.78 72.07 0.49 1.51 16 24 C -0.12 -2.20 4.43 30.63 0.14 -2.07 16 25 H 0.07 1.94 6.57 -2.38 -0.02 1.93 16 26 H 0.05 1.82 6.62 -2.39 -0.02 1.81 16 27 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.04 1.57 6.62 -2.39 -0.02 1.55 16 30 H 0.07 2.26 7.60 -2.39 -0.02 2.24 16 31 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 32 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 33 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 34 H 0.05 1.88 8.13 -2.39 -0.02 1.86 16 35 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.34 8.52 6.08 -89.69 -0.55 7.97 16 37 H 0.06 1.17 8.14 -2.39 -0.02 1.16 16 38 H 0.08 1.47 7.33 -2.39 -0.02 1.46 16 39 H 0.08 1.01 7.63 -2.39 -0.02 0.99 16 40 H 0.09 1.19 8.03 -2.39 -0.02 1.17 16 41 H 0.08 1.30 8.04 -2.39 -0.02 1.28 16 42 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.06 0.85 8.12 -2.39 -0.02 0.83 16 45 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.06 0.83 7.68 -2.38 -0.02 0.81 16 47 H 0.06 1.53 7.93 -2.39 -0.02 1.51 16 48 H 0.08 1.28 7.35 -2.39 -0.02 1.27 16 Total: -1.00 -64.32 358.91 2.82 -61.49 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.36 Total: 17.22 kcal Atomic # 6 Polarization: -41.65 SS G_CDS: 4.13 Total: -37.52 kcal Atomic # 7 Polarization: -75.60 SS G_CDS: -2.10 Total: -77.70 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: -1.60 Total: -10.31 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -64.32 2.82 -61.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367901749.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.698 kcal (2) G-P(sol) polarization free energy of solvation -64.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds