Wall clock time and date at job start Tue Mar 31 2020 06:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47282 * 2 1 4 4 H 1.08996 * 109.47036 * 306.13852 * 3 2 1 5 5 C 1.53002 * 109.46780 * 66.13389 * 3 2 1 6 6 C 1.53003 * 109.46997 * 184.94871 * 5 3 2 7 7 C 1.52998 * 109.47312 * 65.57264 * 6 5 3 8 8 C 1.53004 * 109.46985 * 185.57722 * 6 5 3 9 9 C 1.50699 * 109.47054 * 186.13013 * 3 2 1 10 10 O 1.21284 * 119.99818 * 262.62404 * 9 3 2 11 11 N 1.34778 * 119.99929 * 82.63266 * 9 3 2 12 12 C 1.46926 * 120.62903 * 4.62408 * 11 9 3 13 13 C 1.53630 * 108.53990 * 126.36867 * 12 11 9 14 14 C 1.53044 * 109.24073 * 54.86074 * 13 12 11 15 15 C 1.50695 * 109.45077 * 178.49518 * 14 13 12 16 16 H 1.08000 * 120.00401 * 120.05674 * 15 14 13 17 17 C 1.37878 * 119.99912 * 300.05838 * 15 14 13 18 18 N 1.31516 * 120.00156 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 119.99936 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47607 * 89.99700 * 19 17 15 21 21 H 1.48502 * 109.47014 * 209.99743 * 19 17 15 22 22 H 1.48502 * 109.47096 * 329.99457 * 19 17 15 23 23 C 1.53049 * 109.53442 * 298.50880 * 14 13 12 24 24 C 1.46928 * 120.62951 * 184.90989 * 11 9 3 25 25 H 1.09000 * 109.47299 * 55.40215 * 1 2 3 26 26 H 1.09002 * 109.47148 * 175.39593 * 1 2 3 27 27 H 1.09000 * 109.47617 * 295.39818 * 1 2 3 28 28 H 1.09001 * 109.46993 * 119.99978 * 2 1 3 29 29 H 1.09005 * 109.47579 * 240.00107 * 2 1 3 30 30 H 1.09006 * 109.47230 * 304.94158 * 5 3 2 31 31 H 1.08994 * 109.47299 * 64.94149 * 5 3 2 32 32 H 1.09003 * 109.46752 * 305.57192 * 6 5 3 33 33 H 1.09001 * 109.46956 * 300.05171 * 7 6 5 34 34 H 1.08993 * 109.46968 * 60.05467 * 7 6 5 35 35 H 1.09000 * 109.46929 * 180.02562 * 7 6 5 36 36 H 1.08997 * 109.46878 * 59.99691 * 8 6 5 37 37 H 1.09002 * 109.46696 * 179.97438 * 8 6 5 38 38 H 1.09003 * 109.46943 * 299.99353 * 8 6 5 39 39 H 1.08995 * 109.58938 * 246.20514 * 12 11 9 40 40 H 1.09003 * 109.58625 * 6.63590 * 12 11 9 41 41 H 1.08996 * 109.63683 * 294.86470 * 13 12 11 42 42 H 1.09003 * 109.42859 * 174.72305 * 13 12 11 43 43 H 1.09000 * 109.45951 * 58.52228 * 14 13 12 44 44 H 0.96994 * 119.99909 * 180.02562 * 18 17 15 45 45 H 1.09006 * 109.49450 * 301.41184 * 23 14 13 46 46 H 1.08998 * 109.52138 * 181.33644 * 23 14 13 47 47 H 1.08993 * 109.58578 * 353.36565 * 24 11 9 48 48 H 1.09000 * 109.58639 * 113.65419 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5897 1.9871 -0.8299 5 6 1.6597 2.1178 1.3192 6 6 2.0601 3.5938 1.2705 7 6 1.2278 4.3132 0.2072 8 6 1.8080 4.2358 2.6363 9 6 3.5393 1.4452 -0.1517 10 8 4.2477 1.5439 0.8277 11 7 4.0930 1.3380 -1.3759 12 6 3.2505 1.3195 -2.5794 13 6 3.7491 2.4085 -3.5415 14 6 5.2399 2.1958 -3.8150 15 6 5.7256 3.2396 -4.7873 16 1 6.5135 3.9201 -4.5001 17 6 5.1642 3.3258 -6.0436 18 7 5.5878 4.2370 -6.8921 19 14 3.8009 2.1492 -6.5402 20 1 2.4849 2.7374 -6.1833 21 1 3.8578 1.9159 -8.0056 22 1 3.9763 0.8589 -5.8264 23 6 6.0226 2.3154 -2.5052 24 6 5.5500 1.2311 -1.5317 25 1 -0.3634 0.5835 -0.8459 26 1 -0.3633 -1.0244 -0.0825 27 1 -0.3634 0.4408 0.9283 28 1 1.8932 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 0.5832 2.0383 1.4710 31 1 2.1799 1.6271 2.1418 32 1 3.1179 3.6752 1.0205 33 1 1.4068 3.8551 -0.7655 34 1 0.1702 4.2326 0.4578 35 1 1.5134 5.3645 0.1723 36 1 2.4009 3.7232 3.3937 37 1 2.0936 5.2872 2.6017 38 1 0.7501 4.1544 2.8863 39 1 3.3207 0.3436 -3.0597 40 1 2.2151 1.5198 -2.3038 41 1 3.5979 3.3905 -3.0933 42 1 3.1950 2.3463 -4.4782 43 1 5.3931 1.2039 -4.2402 44 1 5.1925 4.2979 -7.7757 45 1 5.8499 3.2984 -2.0668 46 1 7.0866 2.1875 -2.7038 47 1 6.0323 1.3730 -0.5646 48 1 5.8041 0.2472 -1.9259 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397222462.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:07 Heat of formation + Delta-G solvation = -68.292295 kcal Electronic energy + Delta-G solvation = -24030.290151 eV Core-core repulsion = 20890.920571 eV Total energy + Delta-G solvation = -3139.369580 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.30062 -37.61243 -36.32920 -34.33936 -33.42201 -31.50049 -30.64244 -28.96250 -27.15147 -26.60984 -25.06825 -23.02174 -22.65837 -21.42823 -20.36469 -19.42771 -18.27688 -17.28759 -16.69693 -15.60964 -15.26976 -15.12272 -14.70604 -14.41686 -13.99835 -13.76741 -13.51252 -13.38305 -13.13960 -12.68803 -12.63814 -12.54664 -12.42904 -12.19391 -12.08880 -11.96428 -11.77833 -11.51235 -11.32541 -11.14043 -11.04155 -10.76102 -10.53390 -10.45037 -10.35181 -10.19775 -10.12438 -9.77363 -9.38967 -9.27347 -9.08381 -8.59018 -8.15967 -6.11571 -4.10804 2.89140 3.18471 3.29203 3.29796 3.36564 4.34653 4.52608 4.66287 4.76296 4.99776 5.04758 5.09515 5.11672 5.20140 5.32919 5.42212 5.48710 5.57574 5.60751 5.62837 5.65170 5.73147 5.78510 5.80244 5.84224 5.86145 5.88632 5.94315 5.97081 6.02059 6.05673 6.15931 6.18755 6.25277 6.30016 6.40327 6.46847 6.62373 6.64155 6.75914 6.91489 7.17252 7.46488 7.70377 7.77534 8.47401 8.48387 8.93076 9.50340 11.01919 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.018630 B = 0.005134 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.612619 B = 5453.020843 C = 5594.141080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C -0.114 4.114 4 H 0.096 0.904 5 C -0.095 4.095 6 C -0.102 4.102 7 C -0.150 4.150 8 C -0.142 4.142 9 C 0.519 3.481 10 O -0.551 6.551 11 N -0.602 5.602 12 C 0.100 3.900 13 C -0.135 4.135 14 C 0.015 3.985 15 C -0.513 4.513 16 H 0.073 0.927 17 C 0.068 3.932 18 N -0.901 5.901 19 Si 0.885 3.115 20 H -0.278 1.278 21 H -0.297 1.297 22 H -0.265 1.265 23 C -0.112 4.112 24 C 0.108 3.892 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.050 0.950 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.027 0.973 44 H 0.264 0.736 45 H 0.058 0.942 46 H 0.067 0.933 47 H 0.082 0.918 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.336 -6.636 14.066 19.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C -0.135 4.135 4 H 0.114 0.886 5 C -0.133 4.133 6 C -0.120 4.120 7 C -0.207 4.207 8 C -0.199 4.199 9 C 0.307 3.693 10 O -0.429 6.429 11 N -0.334 5.334 12 C -0.023 4.023 13 C -0.173 4.173 14 C -0.004 4.004 15 C -0.550 4.550 16 H 0.091 0.909 17 C -0.133 4.133 18 N -0.539 5.539 19 Si 0.716 3.284 20 H -0.206 1.206 21 H -0.225 1.225 22 H -0.190 1.190 23 C -0.150 4.150 24 C -0.014 4.014 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.045 0.955 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.085 0.915 47 H 0.101 0.899 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.962 -6.506 14.392 19.225 hybrid contribution -0.776 -0.462 -0.709 1.148 sum -11.738 -6.968 13.683 19.328 Atomic orbital electron populations 1.21807 0.95061 1.01762 1.02139 1.21441 0.96365 0.94505 1.02777 1.21551 0.92767 0.98290 1.00877 0.88585 1.21533 1.00734 0.94946 0.96046 1.21160 1.00999 0.94452 0.95405 1.21911 0.99512 1.00398 0.98865 1.21778 1.01034 1.00360 0.96761 1.20535 0.90440 0.75668 0.82610 1.90631 1.63744 1.50627 1.37940 1.48153 1.07800 1.71638 1.05814 1.22066 0.93865 1.00383 0.85969 1.22456 1.00315 0.97529 0.96977 1.19124 0.90120 0.97861 0.93278 1.21051 1.20855 1.16302 0.96840 0.90856 1.25044 0.96745 0.95104 0.96415 1.69899 1.42780 1.34081 1.07127 0.86876 0.82454 0.82318 0.76776 1.20552 1.22458 1.18997 1.21811 1.00075 0.97394 0.95754 1.21747 0.79404 0.99410 1.00840 0.92465 0.92561 0.92322 0.91380 0.91511 0.91356 0.90921 0.90552 0.92578 0.92933 0.92752 0.92750 0.92922 0.93089 0.91855 0.90627 0.91602 0.92488 0.95451 0.92658 0.92332 0.91450 0.89925 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.58 37.15 0.36 -0.91 16 2 C -0.11 -1.19 5.36 -26.73 -0.14 -1.33 16 3 C -0.11 -1.40 1.24 -91.77 -0.11 -1.52 16 4 H 0.10 1.15 4.40 -51.93 -0.23 0.92 16 5 C -0.09 -1.09 3.70 -26.73 -0.10 -1.19 16 6 C -0.10 -1.25 2.76 -90.62 -0.25 -1.50 16 7 C -0.15 -1.71 8.97 37.16 0.33 -1.37 16 8 C -0.14 -1.51 9.19 37.16 0.34 -1.17 16 9 C 0.52 8.29 6.03 -10.99 -0.07 8.22 16 10 O -0.55 -10.30 14.59 5.55 0.08 -10.22 16 11 N -0.60 -9.93 2.97 -172.50 -0.51 -10.44 16 12 C 0.10 1.59 6.06 -3.48 -0.02 1.57 16 13 C -0.13 -2.69 4.86 -26.38 -0.13 -2.82 16 14 C 0.02 0.34 1.65 -91.73 -0.15 0.18 16 15 C -0.51 -13.95 9.14 -34.44 -0.31 -14.27 16 16 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 17 C 0.07 1.92 5.45 -17.82 -0.10 1.82 16 18 N -0.90 -27.10 13.96 55.43 0.77 -26.33 16 19 Si 0.89 20.96 24.38 -169.99 -4.14 16.82 16 20 H -0.28 -6.34 6.86 56.52 0.39 -5.95 16 21 H -0.30 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.26 -5.89 6.53 56.52 0.37 -5.52 16 23 C -0.11 -2.19 5.30 -26.61 -0.14 -2.33 16 24 C 0.11 1.85 6.44 -3.71 -0.02 1.82 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.46 6.72 -51.93 -0.35 0.11 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.72 7.87 -51.93 -0.41 0.31 16 30 H 0.07 0.66 6.49 -51.93 -0.34 0.32 16 31 H 0.07 0.92 7.70 -51.93 -0.40 0.52 16 32 H 0.08 1.17 6.68 -51.93 -0.35 0.82 16 33 H 0.06 0.68 6.48 -51.93 -0.34 0.34 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.08 1.01 5.42 -51.93 -0.28 0.73 16 41 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 42 H 0.06 1.20 3.24 -51.93 -0.17 1.03 16 43 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 44 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 47 H 0.08 1.43 7.00 -51.93 -0.36 1.06 16 48 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 353.46 15.07 5.33 5.33 Total: -1.00 -30.25 353.46 -7.68 -37.93 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -8.69 Total: 1.68 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -0.52 Total: -14.77 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.26 Total: -36.77 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.08 Total: -10.22 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.14 Total: 16.82 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.25 -7.68 -37.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397222462.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.359 kcal (2) G-P(sol) polarization free energy of solvation -30.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds