Wall clock time and date at job start Tue Mar 31 2020 06:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47140 * 2 1 4 4 H 1.09006 * 109.47429 * 306.42861 * 3 2 1 5 5 C 1.53003 * 109.46843 * 186.43277 * 3 2 1 6 6 C 1.52995 * 109.47240 * 65.92327 * 5 3 2 7 7 C 1.53001 * 109.47021 * 66.58383 * 6 5 3 8 8 C 1.53007 * 109.47072 * 186.58146 * 6 5 3 9 9 C 1.50700 * 109.47311 * 66.43323 * 3 2 1 10 10 O 1.21280 * 119.99844 * 29.00443 * 9 3 2 11 11 N 1.34779 * 119.99954 * 209.01031 * 9 3 2 12 12 C 1.46927 * 120.62963 * 4.37991 * 11 9 3 13 13 C 1.53629 * 108.54078 * 126.37115 * 12 11 9 14 14 C 1.53038 * 109.24130 * 54.85603 * 13 12 11 15 15 C 1.50701 * 109.44806 * 178.49729 * 14 13 12 16 16 H 1.08005 * 119.99843 * 120.05930 * 15 14 13 17 17 C 1.37878 * 120.00001 * 300.06064 * 15 14 13 18 18 N 1.31518 * 119.99828 * 180.02562 * 17 15 14 19 19 Si 1.86793 * 119.99977 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.47381 * 90.00032 * 19 17 15 21 21 H 1.48501 * 109.47180 * 210.00130 * 19 17 15 22 22 H 1.48504 * 109.47295 * 330.00105 * 19 17 15 23 23 C 1.53048 * 109.53965 * 298.50981 * 14 13 12 24 24 C 1.46926 * 120.62753 * 184.66554 * 11 9 3 25 25 H 1.09002 * 109.47750 * 184.68262 * 1 2 3 26 26 H 1.09009 * 109.46808 * 304.67911 * 1 2 3 27 27 H 1.09000 * 109.47459 * 64.67586 * 1 2 3 28 28 H 1.09005 * 109.46694 * 240.00008 * 2 1 3 29 29 H 1.08999 * 109.47057 * 120.00433 * 2 1 3 30 30 H 1.09003 * 109.47103 * 305.91775 * 5 3 2 31 31 H 1.09004 * 109.46884 * 185.92491 * 5 3 2 32 32 H 1.08996 * 109.47195 * 306.58265 * 6 5 3 33 33 H 1.08996 * 109.47232 * 59.99905 * 7 6 5 34 34 H 1.09003 * 109.47388 * 180.02562 * 7 6 5 35 35 H 1.09004 * 109.47232 * 299.99666 * 7 6 5 36 36 H 1.08991 * 109.47142 * 64.91025 * 8 6 5 37 37 H 1.08998 * 109.46800 * 184.91405 * 8 6 5 38 38 H 1.09003 * 109.47086 * 304.90720 * 8 6 5 39 39 H 1.08998 * 109.58600 * 246.20052 * 12 11 9 40 40 H 1.09000 * 109.58786 * 6.63054 * 12 11 9 41 41 H 1.08999 * 109.63284 * 294.86683 * 13 12 11 42 42 H 1.08999 * 109.43366 * 174.72460 * 13 12 11 43 43 H 1.08996 * 109.46371 * 58.53110 * 14 13 12 44 44 H 0.96991 * 119.99619 * 180.02562 * 18 17 15 45 45 H 1.09002 * 109.49672 * 301.41518 * 23 14 13 46 46 H 1.08995 * 109.49694 * 181.31758 * 23 14 13 47 47 H 1.08996 * 109.59087 * 353.36926 * 24 11 9 48 48 H 1.09003 * 109.58410 * 113.65802 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5858 1.9885 -0.8269 5 6 3.5615 1.4454 -0.1616 6 6 3.9283 0.9075 -1.5461 7 6 3.4400 1.8836 -2.6183 8 6 5.4475 0.7559 -1.6483 9 6 1.6719 2.1054 1.3023 10 8 1.5598 1.4409 2.3106 11 7 1.4672 3.4369 1.3464 12 6 1.5049 4.2412 0.1174 13 6 0.2012 5.0482 0.0215 14 6 0.0190 5.8660 1.3022 15 6 -1.2398 6.6879 1.1978 16 1 -2.0355 6.5505 1.9151 17 6 -1.3759 7.6152 0.1865 18 7 -2.4743 8.3328 0.0958 19 14 -0.0001 7.8523 -1.0545 20 1 -0.2074 6.9359 -2.2045 21 1 -0.0032 9.2576 -1.5346 22 1 1.3042 7.5519 -0.4111 23 6 -0.0867 4.9217 2.5019 24 6 1.2082 4.1124 2.6252 25 1 -0.3635 -1.0242 0.0839 26 1 -0.3633 0.5848 0.8452 27 1 -0.3634 0.4396 -0.9289 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 4.0095 0.8125 0.6045 31 1 3.9360 2.4636 -0.0564 32 1 3.4555 -0.0631 -1.6959 33 1 3.9129 2.8542 -2.4686 34 1 3.7009 1.5003 -3.6048 35 1 2.3578 1.9917 -2.5456 36 1 5.7850 -0.0039 -0.9435 37 1 5.7153 0.4564 -2.6615 38 1 5.9242 1.7074 -1.4128 39 1 2.3567 4.9204 0.1513 40 1 1.5936 3.5834 -0.7472 41 1 -0.6423 4.3685 -0.0991 42 1 0.2529 5.7203 -0.8351 43 1 0.8747 6.5279 1.4353 44 1 -2.5701 8.9849 -0.6158 45 1 -0.9275 4.2431 2.3578 46 1 -0.2398 5.5037 3.4106 47 1 1.1010 3.3697 3.4157 48 1 2.0376 4.7795 2.8605 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397222463.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:09 Heat of formation + Delta-G solvation = -67.288555 kcal Electronic energy + Delta-G solvation = -23934.085762 eV Core-core repulsion = 20794.759707 eV Total energy + Delta-G solvation = -3139.326055 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.28300 -37.64439 -36.72691 -33.70603 -33.53688 -31.56631 -30.65466 -29.33278 -27.36699 -26.53527 -24.55599 -23.23777 -22.65637 -21.93693 -20.14993 -19.35172 -18.30841 -17.31855 -16.69334 -15.66364 -15.62818 -14.85759 -14.74825 -14.22373 -14.00727 -13.84550 -13.51378 -13.35321 -13.26160 -13.04948 -12.66644 -12.52944 -12.41661 -12.27086 -12.06593 -11.91581 -11.82695 -11.45180 -11.32698 -11.05594 -11.01261 -10.80020 -10.76030 -10.51284 -10.45721 -10.19704 -10.12784 -9.77453 -9.39237 -9.26790 -9.07899 -8.59017 -8.16372 -6.11645 -4.10903 2.88606 3.18415 3.28890 3.29659 3.36255 4.34619 4.46919 4.60559 4.69612 4.90064 4.91616 5.04266 5.15307 5.19752 5.30884 5.43184 5.44910 5.51393 5.58405 5.60280 5.61404 5.66527 5.70553 5.73857 5.80134 5.84049 5.88025 5.90504 5.96795 6.02533 6.04114 6.13448 6.18668 6.23421 6.28123 6.29622 6.35626 6.62223 6.64082 6.75770 6.91363 7.17174 7.46434 7.70301 7.77309 8.47148 8.48303 8.92953 9.50257 11.01856 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.018078 B = 0.005316 C = 0.004666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.482226 B = 5265.538907 C = 5998.775684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.107 4.107 3 C -0.114 4.114 4 H 0.096 0.904 5 C -0.102 4.102 6 C -0.097 4.097 7 C -0.153 4.153 8 C -0.147 4.147 9 C 0.520 3.480 10 O -0.552 6.552 11 N -0.601 5.601 12 C 0.099 3.901 13 C -0.135 4.135 14 C 0.015 3.985 15 C -0.513 4.513 16 H 0.073 0.927 17 C 0.068 3.932 18 N -0.901 5.901 19 Si 0.885 3.115 20 H -0.278 1.278 21 H -0.297 1.297 22 H -0.265 1.265 23 C -0.112 4.112 24 C 0.108 3.892 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.028 0.972 44 H 0.264 0.736 45 H 0.058 0.942 46 H 0.067 0.933 47 H 0.082 0.918 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.309 -14.334 -4.671 20.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.144 4.144 3 C -0.135 4.135 4 H 0.114 0.886 5 C -0.140 4.140 6 C -0.115 4.115 7 C -0.210 4.210 8 C -0.204 4.204 9 C 0.308 3.692 10 O -0.431 6.431 11 N -0.334 5.334 12 C -0.023 4.023 13 C -0.173 4.173 14 C -0.004 4.004 15 C -0.551 4.551 16 H 0.092 0.908 17 C -0.133 4.133 18 N -0.539 5.539 19 Si 0.716 3.284 20 H -0.205 1.205 21 H -0.225 1.225 22 H -0.190 1.190 23 C -0.150 4.150 24 C -0.014 4.014 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.046 0.954 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.086 0.914 47 H 0.101 0.899 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.149 -14.521 -4.222 20.039 hybrid contribution 0.521 0.469 -0.902 1.143 sum 13.670 -14.052 -5.124 20.263 Atomic orbital electron populations 1.21799 0.95625 1.01744 1.02019 1.21451 0.96185 0.94296 1.02512 1.21547 0.97650 0.97903 0.96410 0.88606 1.21550 0.93103 1.02002 0.97336 1.21174 0.96142 0.99660 0.94552 1.21944 1.01489 0.99395 0.98211 1.21834 0.95355 1.01752 1.01485 1.20527 0.76385 0.81677 0.90636 1.90629 1.52653 1.63169 1.36640 1.48159 1.69521 1.06773 1.08920 1.22088 0.99878 0.94422 0.85953 1.22455 0.95076 0.98673 1.01084 1.19125 0.98128 0.93068 0.90076 1.21058 1.01463 1.18888 1.13684 0.90846 1.25044 0.95337 0.95372 0.97554 1.69900 1.26375 1.24381 1.33224 0.86877 0.83513 0.76235 0.81809 1.20540 1.22452 1.18983 1.21812 0.95241 0.97833 1.00150 1.21754 0.98439 0.96053 0.85190 0.92719 0.92280 0.92931 0.91311 0.90839 0.91239 0.91498 0.90668 0.92486 0.92709 0.92304 0.92759 0.92712 0.92683 0.91865 0.90513 0.91609 0.92473 0.95441 0.92656 0.92328 0.91430 0.89919 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.79 37.16 0.36 -1.54 16 2 C -0.11 -1.24 5.03 -26.73 -0.13 -1.37 16 3 C -0.11 -1.41 1.45 -91.77 -0.13 -1.54 16 4 H 0.10 1.14 4.07 -51.93 -0.21 0.93 16 5 C -0.10 -1.08 4.11 -26.73 -0.11 -1.19 16 6 C -0.10 -0.84 2.81 -90.62 -0.25 -1.09 16 7 C -0.15 -1.33 8.98 37.16 0.33 -0.99 16 8 C -0.15 -1.14 9.19 37.16 0.34 -0.80 16 9 C 0.52 8.38 5.86 -10.98 -0.06 8.31 16 10 O -0.55 -10.47 15.08 5.56 0.08 -10.38 16 11 N -0.60 -9.99 2.97 -172.50 -0.51 -10.51 16 12 C 0.10 1.59 6.35 -3.48 -0.02 1.57 16 13 C -0.13 -2.70 4.86 -26.38 -0.13 -2.83 16 14 C 0.01 0.33 1.65 -91.73 -0.15 0.18 16 15 C -0.51 -13.99 9.14 -34.44 -0.31 -14.31 16 16 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 17 C 0.07 1.92 5.45 -17.82 -0.10 1.82 16 18 N -0.90 -27.11 13.96 55.43 0.77 -26.34 16 19 Si 0.89 20.97 24.38 -169.99 -4.14 16.83 16 20 H -0.28 -6.33 6.86 56.52 0.39 -5.95 16 21 H -0.30 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.26 -5.89 6.53 56.52 0.37 -5.52 16 23 C -0.11 -2.20 5.30 -26.60 -0.14 -2.34 16 24 C 0.11 1.85 6.44 -3.71 -0.02 1.83 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.88 7.03 -51.92 -0.37 0.51 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.65 6.21 -51.93 -0.32 0.33 16 29 H 0.07 0.94 7.62 -51.93 -0.40 0.54 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.62 6.21 -51.93 -0.32 0.30 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.53 6.50 -51.93 -0.34 0.19 16 36 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.08 1.04 5.30 -51.93 -0.28 0.76 16 41 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.06 1.20 3.24 -51.93 -0.17 1.03 16 43 H 0.03 0.63 7.20 -51.93 -0.37 0.25 16 44 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 47 H 0.08 1.43 7.00 -51.93 -0.36 1.07 16 48 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 353.95 15.07 5.33 5.33 Total: -1.00 -30.40 353.95 -7.66 -38.06 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -8.65 Total: 1.30 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -0.54 Total: -14.29 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.26 Total: -36.84 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.08 Total: -10.38 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.14 Total: 16.83 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.40 -7.66 -38.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397222463.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.230 kcal (2) G-P(sol) polarization free energy of solvation -30.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds