Wall clock time and date at job start Tue Mar 31 2020 06:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47098 * 2 1 4 4 H 1.08995 * 109.46981 * 306.76949 * 3 2 1 5 5 C 1.53005 * 109.47051 * 186.77204 * 3 2 1 6 6 C 1.52997 * 109.47169 * 65.62757 * 5 3 2 7 7 C 1.53000 * 109.47048 * 65.27832 * 6 5 3 8 8 C 1.53005 * 109.47031 * 185.27982 * 6 5 3 9 9 C 1.50692 * 109.47407 * 66.77313 * 3 2 1 10 10 O 1.21279 * 120.00126 * 28.11878 * 9 3 2 11 11 N 1.34785 * 120.00254 * 208.12389 * 9 3 2 12 12 C 1.46928 * 120.62571 * 3.88387 * 11 9 3 13 13 C 1.53622 * 108.53702 * 126.37226 * 12 11 9 14 14 C 1.53032 * 109.24633 * 54.85275 * 13 12 11 15 15 C 1.53040 * 109.54049 * 298.50980 * 14 13 12 16 16 H 1.08999 * 109.52229 * 301.39666 * 15 14 13 17 17 C 1.50699 * 109.49634 * 181.31254 * 15 14 13 18 18 H 1.07995 * 120.00031 * 245.21861 * 17 15 14 19 19 C 1.37885 * 119.99973 * 65.22603 * 17 15 14 20 20 N 1.31514 * 119.99953 * 6.16077 * 19 17 15 21 21 Si 1.86800 * 119.99869 * 186.16397 * 19 17 15 22 22 H 1.48496 * 109.46940 * 94.99338 * 21 19 17 23 23 H 1.48503 * 109.46762 * 214.99253 * 21 19 17 24 24 H 1.48500 * 109.46918 * 334.98940 * 21 19 17 25 25 C 1.46923 * 120.63106 * 184.16290 * 11 9 3 26 26 H 1.08999 * 109.47038 * 64.63199 * 1 2 3 27 27 H 1.09003 * 109.46989 * 184.63506 * 1 2 3 28 28 H 1.08993 * 109.47155 * 304.63341 * 1 2 3 29 29 H 1.09006 * 109.47420 * 239.99652 * 2 1 3 30 30 H 1.09004 * 109.46878 * 120.00215 * 2 1 3 31 31 H 1.09001 * 109.46846 * 305.62587 * 5 3 2 32 32 H 1.08997 * 109.47078 * 185.62888 * 5 3 2 33 33 H 1.08998 * 109.47517 * 305.27832 * 6 5 3 34 34 H 1.09006 * 109.47116 * 179.97438 * 7 6 5 35 35 H 1.09000 * 109.46922 * 60.00430 * 7 6 5 36 36 H 1.08995 * 109.47343 * 300.00106 * 7 6 5 37 37 H 1.08998 * 109.47002 * 295.11763 * 8 6 5 38 38 H 1.08997 * 109.46888 * 55.12172 * 8 6 5 39 39 H 1.08998 * 109.46670 * 175.12150 * 8 6 5 40 40 H 1.08995 * 109.58295 * 246.20507 * 12 11 9 41 41 H 1.09001 * 109.58501 * 6.62818 * 12 11 9 42 42 H 1.09006 * 109.63498 * 294.85834 * 13 12 11 43 43 H 1.09003 * 109.45908 * 174.74215 * 13 12 11 44 44 H 1.09005 * 109.46452 * 178.48694 * 14 13 12 45 45 H 1.09001 * 109.45853 * 58.53373 * 14 13 12 46 46 H 0.96991 * 119.99937 * 180.02562 * 20 19 17 47 47 H 1.09003 * 109.58971 * 353.37630 * 25 11 9 48 48 H 1.09005 * 109.58380 * 113.79958 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5812 1.9900 -0.8232 5 6 3.5606 1.4458 -0.1701 6 6 3.9200 0.9038 -1.5550 7 6 3.3966 1.8600 -2.6285 8 6 5.4405 0.7834 -1.6766 9 6 1.6792 2.1029 1.3056 10 8 1.5570 1.4342 2.3100 11 7 1.4923 3.4367 1.3571 12 6 1.5530 4.2489 0.1342 13 6 0.2615 5.0743 0.0314 14 6 0.0779 5.8856 1.3159 15 6 -0.0525 4.9346 2.5078 16 1 -0.9010 4.2687 2.3514 17 6 -0.2655 5.7335 3.7677 18 1 0.4823 5.7228 4.5468 19 6 -1.4153 6.4780 3.9259 20 7 -2.3790 6.3968 3.0347 21 14 -1.6039 7.6021 5.4058 22 1 -1.1863 8.9789 5.0381 23 1 -3.0241 7.6148 5.8398 24 1 -0.7515 7.1060 6.5160 25 6 1.2299 4.1069 2.6380 26 1 -0.3633 0.4403 -0.9286 27 1 -0.3633 -1.0243 0.0830 28 1 -0.3633 0.5840 0.8455 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 4.0132 0.8156 0.5955 32 1 3.9351 2.4645 -0.0702 33 1 3.4659 -0.0778 -1.6901 34 1 3.6531 1.4741 -3.6152 35 1 3.8508 2.8416 -2.4935 36 1 2.3135 1.9458 -2.5418 37 1 5.8885 1.7758 -1.6282 38 1 5.8230 0.1717 -0.8596 39 1 5.6929 0.3169 -2.6288 40 1 2.4137 4.9160 0.1811 41 1 1.6412 3.5958 -0.7341 42 1 -0.5900 4.4070 -0.1023 43 1 0.3301 5.7515 -0.8200 44 1 -0.8236 6.4933 1.2359 45 1 0.9412 6.5348 1.4619 46 1 -3.1876 6.9208 3.1457 47 1 1.1049 3.3602 3.4222 48 1 2.0648 4.7628 2.8849 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397823219.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:16 Heat of formation + Delta-G solvation = -76.719206 kcal Electronic energy + Delta-G solvation = -23767.981394 eV Core-core repulsion = 20628.246396 eV Total energy + Delta-G solvation = -3139.734999 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.05648 -37.42970 -36.49661 -33.61522 -33.37321 -31.37546 -30.32106 -29.17987 -27.34183 -25.34797 -24.92334 -23.80211 -22.25448 -21.62220 -20.07938 -19.19252 -18.12874 -17.13482 -16.23948 -15.56353 -15.22622 -14.79875 -14.52921 -14.09870 -13.80204 -13.73754 -13.46603 -13.26052 -12.97045 -12.79977 -12.65619 -12.41555 -12.25465 -12.05047 -11.95584 -11.76657 -11.42292 -11.27186 -10.99397 -10.95506 -10.85659 -10.77045 -10.66965 -10.52168 -10.36965 -10.19717 -10.01176 -9.71539 -9.47141 -9.11797 -8.79453 -8.36864 -7.84812 -6.03371 -4.07071 3.12243 3.29862 3.37213 3.40624 3.59458 4.43780 4.57926 4.69380 4.75715 4.98806 5.01284 5.15108 5.24074 5.29063 5.38157 5.46550 5.50736 5.58525 5.61817 5.66337 5.69180 5.75864 5.78210 5.79445 5.92856 5.94957 6.04469 6.08379 6.14545 6.19616 6.29041 6.32211 6.38271 6.41643 6.46205 6.48261 6.66425 6.80793 7.00525 7.15441 7.28767 7.69061 7.91226 7.99946 8.07383 8.37890 8.73990 8.97318 9.57012 11.05160 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.026387 B = 0.004174 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.882911 B = 6706.067060 C = 6929.849483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.107 4.107 3 C -0.112 4.112 4 H 0.093 0.907 5 C -0.102 4.102 6 C -0.097 4.097 7 C -0.151 4.151 8 C -0.147 4.147 9 C 0.514 3.486 10 O -0.550 6.550 11 N -0.603 5.603 12 C 0.108 3.892 13 C -0.135 4.135 14 C -0.106 4.106 15 C 0.039 3.961 16 H 0.035 0.965 17 C -0.516 4.516 18 H 0.057 0.943 19 C 0.065 3.935 20 N -0.888 5.888 21 Si 0.890 3.110 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.273 1.273 25 C 0.116 3.884 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.079 0.921 45 H 0.037 0.963 46 H 0.260 0.740 47 H 0.079 0.921 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.887 -8.593 -12.825 18.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.145 4.145 3 C -0.134 4.134 4 H 0.111 0.889 5 C -0.140 4.140 6 C -0.116 4.116 7 C -0.209 4.209 8 C -0.204 4.204 9 C 0.302 3.698 10 O -0.429 6.429 11 N -0.335 5.335 12 C -0.016 4.016 13 C -0.173 4.173 14 C -0.144 4.144 15 C 0.020 3.980 16 H 0.053 0.947 17 C -0.554 4.554 18 H 0.075 0.925 19 C -0.137 4.137 20 N -0.526 5.526 21 Si 0.718 3.282 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.198 1.198 25 C -0.004 4.004 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.097 0.903 45 H 0.056 0.944 46 H 0.070 0.930 47 H 0.097 0.903 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.641 -8.862 -12.315 18.531 hybrid contribution -0.266 0.889 0.700 1.162 sum 10.375 -7.973 -11.615 17.496 Atomic orbital electron populations 1.21791 0.95671 1.01714 1.01969 1.21448 0.96171 0.94467 1.02384 1.21522 0.97436 0.97826 0.96568 0.88880 1.21549 0.93368 1.01974 0.97117 1.21175 0.96000 0.99744 0.94641 1.21929 1.01325 0.99447 0.98164 1.21836 0.95398 1.01771 1.01422 1.20477 0.76854 0.82002 0.90457 1.90640 1.52228 1.63004 1.36995 1.48317 1.69301 1.06357 1.09549 1.21879 0.98858 0.94205 0.86620 1.22071 0.96349 0.98913 0.99990 1.21554 1.01488 0.98532 0.92829 1.18966 0.91646 0.93266 0.94097 0.94698 1.21072 1.04101 1.27995 1.02249 0.92515 1.24936 0.95477 0.96961 0.96322 1.69950 1.06427 1.40661 1.35566 0.86606 0.77338 0.81134 0.83111 1.20736 1.21277 1.19814 1.21975 0.99321 0.95786 0.83366 0.93148 0.92813 0.92061 0.91507 0.90829 0.91283 0.91529 0.90719 0.92835 0.92532 0.92322 0.92700 0.92704 0.92833 0.92067 0.90826 0.92261 0.92542 0.90252 0.94425 0.93024 0.90296 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.79 37.16 0.36 -1.69 16 2 C -0.11 -1.34 5.02 -26.73 -0.13 -1.48 16 3 C -0.11 -1.48 1.39 -91.77 -0.13 -1.60 16 4 H 0.09 1.12 4.09 -51.93 -0.21 0.91 16 5 C -0.10 -1.14 4.12 -26.73 -0.11 -1.25 16 6 C -0.10 -0.85 2.80 -90.62 -0.25 -1.11 16 7 C -0.15 -1.24 8.96 37.16 0.33 -0.91 16 8 C -0.15 -1.16 9.19 37.16 0.34 -0.82 16 9 C 0.51 9.27 5.90 -10.99 -0.06 9.20 16 10 O -0.55 -11.95 15.04 5.56 0.08 -11.86 16 11 N -0.60 -11.18 2.97 -172.51 -0.51 -11.69 16 12 C 0.11 1.65 6.35 -3.49 -0.02 1.63 16 13 C -0.14 -2.37 6.10 -26.39 -0.16 -2.53 16 14 C -0.11 -2.35 5.01 -26.69 -0.13 -2.48 16 15 C 0.04 0.97 2.12 -91.66 -0.19 0.78 16 16 H 0.03 0.98 8.12 -51.93 -0.42 0.56 16 17 C -0.52 -14.07 8.49 -34.44 -0.29 -14.36 16 18 H 0.06 1.53 7.76 -52.49 -0.41 1.13 16 19 C 0.06 1.79 5.24 -17.82 -0.09 1.69 16 20 N -0.89 -25.27 11.99 55.43 0.66 -24.61 16 21 Si 0.89 21.23 29.54 -169.99 -5.02 16.20 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 24 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 25 C 0.12 2.55 5.66 -3.72 -0.02 2.53 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 1.02 7.03 -51.93 -0.37 0.65 16 29 H 0.07 0.67 6.21 -51.93 -0.32 0.35 16 30 H 0.07 1.04 7.61 -51.93 -0.40 0.64 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.64 6.24 -51.93 -0.32 0.32 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.49 6.46 -51.93 -0.34 0.16 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.07 0.92 5.32 -51.93 -0.28 0.65 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.08 1.99 6.72 -51.93 -0.35 1.64 16 45 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 47 H 0.08 1.88 7.00 -51.93 -0.36 1.52 16 48 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 361.84 15.07 5.45 5.45 Total: -1.00 -29.89 361.84 -8.73 -38.61 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -8.82 Total: 0.28 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -0.57 Total: -12.39 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.15 Total: -36.30 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.08 Total: -11.86 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.89 -8.73 -38.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397823219.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.105 kcal (2) G-P(sol) polarization free energy of solvation -29.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds