Wall clock time and date at job start Tue Mar 31 2020 05:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47125 * 2 1 4 4 C 1.53003 * 109.47038 * 119.99858 * 2 1 3 5 5 N 1.46498 * 109.47378 * 174.53539 * 4 2 1 6 6 C 1.46505 * 119.99357 * 277.50074 * 5 4 2 7 7 C 1.50700 * 109.46570 * 269.99439 * 6 5 4 8 8 H 1.07998 * 120.00640 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99742 * 180.02562 * 7 6 5 10 10 N 1.31510 * 119.99980 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99998 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47197 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47344 * 120.00134 * 11 9 7 14 14 H 1.48505 * 109.47063 * 240.00055 * 11 9 7 15 15 C 1.34771 * 120.00632 * 97.49681 * 5 4 2 16 16 O 1.21282 * 120.00424 * 175.93621 * 15 5 4 17 17 C 1.50700 * 119.99778 * 356.20259 * 15 5 4 18 18 C 1.52996 * 109.47282 * 175.61139 * 17 15 5 19 19 C 1.53001 * 109.47219 * 300.00053 * 18 17 15 20 20 C 1.53000 * 109.47208 * 60.00048 * 18 17 15 21 21 C 1.53001 * 109.47250 * 180.02562 * 18 17 15 22 22 C 1.53002 * 117.49505 * 248.74531 * 21 18 17 23 23 C 1.53000 * 117.49660 * 180.09007 * 21 18 17 24 24 H 1.09000 * 109.47379 * 300.00174 * 1 2 3 25 25 H 1.09004 * 109.46859 * 60.00464 * 1 2 3 26 26 H 1.09001 * 109.47026 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47300 * 239.99361 * 2 1 3 28 28 H 1.09001 * 109.47289 * 57.62462 * 3 2 1 29 29 H 1.08999 * 109.46846 * 177.62883 * 3 2 1 30 30 H 1.09001 * 109.46830 * 297.62463 * 3 2 1 31 31 H 1.08999 * 109.47045 * 54.52801 * 4 2 1 32 32 H 1.09008 * 109.46916 * 294.52830 * 4 2 1 33 33 H 1.08997 * 109.47409 * 29.99637 * 6 5 4 34 34 H 1.08997 * 109.47180 * 150.00159 * 6 5 4 35 35 H 0.97002 * 120.00170 * 180.02562 * 10 9 7 36 36 H 1.08995 * 109.47660 * 295.61375 * 17 15 5 37 37 H 1.09002 * 109.47154 * 55.61267 * 17 15 5 38 38 H 1.09007 * 109.46464 * 59.99966 * 19 18 17 39 39 H 1.09000 * 109.47319 * 179.97438 * 19 18 17 40 40 H 1.08998 * 109.47634 * 300.00333 * 19 18 17 41 41 H 1.09001 * 109.47038 * 60.00410 * 20 18 17 42 42 H 1.08994 * 109.47300 * 179.97438 * 20 18 17 43 43 H 1.08997 * 109.47055 * 300.00143 * 20 18 17 44 44 H 1.08995 * 115.55152 * 34.41410 * 21 18 17 45 45 H 1.08996 * 117.50408 * 0.02562 * 22 21 18 46 46 H 1.09002 * 117.49638 * 145.02111 * 22 21 18 47 47 H 1.09007 * 117.49819 * 214.97481 * 23 21 18 48 48 H 1.09001 * 117.50315 * 359.97438 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.4991 -0.8362 1.1854 6 6 4.1153 -1.9200 0.4159 7 6 4.3119 -3.1195 1.3067 8 1 4.0079 -3.0789 2.3422 9 6 4.8801 -4.2690 0.7997 10 7 5.2507 -4.3184 -0.4611 11 14 5.1232 -5.7562 1.9036 12 1 4.6262 -5.4462 3.2682 13 1 4.3684 -6.9103 1.3527 14 1 6.5678 -6.0944 1.9674 15 6 4.2744 0.0549 1.8343 16 8 5.4794 -0.0825 1.8428 17 6 3.6437 1.2187 2.5546 18 6 4.7260 2.0087 3.2930 19 6 5.4205 1.0972 4.3069 20 6 5.7543 2.5285 2.2864 21 6 4.0856 3.1899 4.0248 22 6 4.4006 4.5954 3.5086 23 6 5.0094 4.1093 4.8262 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.6423 1.9685 0.8679 29 1 3.1292 1.4427 0.0425 30 1 1.7118 1.9438 -0.9105 31 1 1.5988 -1.7167 1.2996 32 1 1.7588 -0.1539 2.1366 33 1 3.4661 -2.1887 -0.4173 34 1 5.0808 -1.5900 0.0326 35 1 5.6501 -5.1272 -0.8180 36 1 3.1490 1.8681 1.8324 37 1 2.9111 0.8484 3.2717 38 1 5.8767 0.2554 3.7858 39 1 6.1919 1.6599 4.8327 40 1 4.6880 0.7268 5.0240 41 1 5.2596 3.1779 1.5642 42 1 6.5251 3.0917 2.8124 43 1 6.2105 1.6868 1.7655 44 1 3.0859 3.0115 4.4208 45 1 5.0636 4.6785 2.6475 46 1 3.6081 5.3417 3.5655 47 1 4.6173 4.5361 5.7494 48 1 6.0733 3.8724 4.8325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405811150.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:31 Heat of formation + Delta-G solvation = -27.686433 kcal Electronic energy + Delta-G solvation = -23953.433322 eV Core-core repulsion = 20815.824544 eV Total energy + Delta-G solvation = -3137.608778 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.97114 -38.15363 -36.30147 -33.91490 -33.00329 -32.23560 -28.76062 -27.22654 -26.99395 -26.62606 -25.31162 -23.54758 -22.24450 -22.16652 -20.18409 -18.52679 -17.80241 -16.64742 -16.42344 -15.72760 -15.22905 -15.09034 -14.66731 -14.22364 -14.12332 -13.52042 -13.35376 -13.13790 -13.06173 -12.49472 -12.32470 -12.16122 -11.96612 -11.73626 -11.57046 -11.34784 -11.30938 -11.11172 -10.90973 -10.80596 -10.75708 -10.67705 -10.63094 -10.50140 -10.43838 -10.32929 -10.09752 -10.03060 -9.68245 -9.52427 -8.53294 -8.40712 -7.54401 -6.01250 -4.05212 3.31155 3.38720 3.42352 3.52412 3.83128 4.01977 4.47325 4.73885 4.92620 4.99164 5.07973 5.08499 5.16240 5.25526 5.32964 5.37540 5.45618 5.58424 5.63160 5.67353 5.73626 5.74351 5.84608 5.89468 5.91521 5.95653 6.03042 6.08906 6.10425 6.14631 6.16769 6.22744 6.30083 6.33953 6.43792 6.49257 6.52426 6.60164 6.87413 6.92919 7.13689 7.49231 7.63926 7.96039 8.28230 8.52446 8.95794 9.21446 9.60025 11.06712 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015197 B = 0.005591 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.027799 B = 5006.895507 C = 6240.730247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.149 4.149 4 C 0.116 3.884 5 N -0.596 5.596 6 C 0.247 3.753 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.061 3.939 10 N -0.896 5.896 11 Si 0.895 3.105 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.508 3.492 16 O -0.534 6.534 17 C -0.144 4.144 18 C -0.013 4.013 19 C -0.148 4.148 20 C -0.157 4.157 21 C -0.140 4.140 22 C -0.186 4.186 23 C -0.179 4.179 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.077 0.923 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.029 0.971 34 H 0.041 0.959 35 H 0.262 0.738 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.046 0.954 40 H 0.043 0.957 41 H 0.045 0.955 42 H 0.044 0.956 43 H 0.094 0.906 44 H 0.099 0.901 45 H 0.101 0.899 46 H 0.086 0.914 47 H 0.088 0.912 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.662 15.127 5.272 17.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.136 4.136 3 C -0.206 4.206 4 C -0.009 4.009 5 N -0.327 5.327 6 C 0.128 3.872 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.141 4.141 10 N -0.535 5.535 11 Si 0.723 3.277 12 H -0.198 1.198 13 H -0.211 1.211 14 H -0.209 1.209 15 C 0.295 3.705 16 O -0.412 6.412 17 C -0.184 4.184 18 C -0.013 4.013 19 C -0.205 4.205 20 C -0.214 4.214 21 C -0.158 4.158 22 C -0.223 4.223 23 C -0.216 4.216 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.095 0.905 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.047 0.953 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.116 0.884 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.113 0.887 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.105 0.895 47 H 0.106 0.894 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.937 14.904 5.132 17.222 hybrid contribution -0.070 -0.881 0.602 1.069 sum -7.006 14.023 5.734 16.692 Atomic orbital electron populations 1.21761 0.95142 1.01794 1.01314 1.21558 0.95336 0.96510 1.00204 1.22035 1.01566 0.96040 1.00987 1.21530 0.81896 1.00914 0.96555 1.48226 1.05194 1.29046 1.50246 1.19215 0.94090 0.83260 0.90616 1.21471 1.40305 0.97219 0.96981 0.92512 1.24922 0.95367 0.98733 0.95083 1.69941 1.42074 1.28305 1.13192 0.86483 0.77913 0.82503 0.80760 1.19849 1.21056 1.20927 1.20283 0.87340 0.83289 0.79550 1.90525 1.14497 1.75279 1.60907 1.22124 0.99016 0.96781 1.00430 1.19729 0.94266 0.92599 0.94729 1.22032 0.99760 1.00649 0.98071 1.22264 0.98226 1.02337 0.98530 1.22396 0.99427 0.90992 1.02975 1.23135 1.03735 0.97186 0.98270 1.22898 0.99444 1.04312 0.94964 0.92922 0.92891 0.92490 0.90486 0.92704 0.92175 0.93116 0.90409 0.91506 0.95252 0.94084 0.92877 0.88379 0.90117 0.89456 0.93537 0.93820 0.93620 0.93685 0.88728 0.88295 0.88117 0.89514 0.89398 0.88841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.19 37.16 0.34 -1.23 16 2 C -0.12 -1.60 3.10 -90.62 -0.28 -1.89 16 3 C -0.15 -1.87 7.49 37.16 0.28 -1.59 16 4 C 0.12 1.86 4.89 -4.04 -0.02 1.84 16 5 N -0.60 -12.25 2.22 -175.06 -0.39 -12.64 16 6 C 0.25 6.38 5.15 -5.19 -0.03 6.35 16 7 C -0.52 -14.70 9.39 -34.44 -0.32 -15.03 16 8 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 9 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 10 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 11 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 15 C 0.51 10.10 5.99 -10.99 -0.07 10.03 16 16 O -0.53 -12.55 10.99 5.56 0.06 -12.49 16 17 C -0.14 -2.13 3.19 -27.89 -0.09 -2.22 16 18 C -0.01 -0.18 0.62 -154.51 -0.10 -0.28 16 19 C -0.15 -2.32 8.02 37.16 0.30 -2.02 16 20 C -0.16 -2.33 6.78 37.16 0.25 -2.08 16 21 C -0.14 -1.62 5.14 -90.62 -0.47 -2.08 16 22 C -0.19 -1.93 9.57 -26.69 -0.26 -2.19 16 23 C -0.18 -1.89 9.38 -26.69 -0.25 -2.14 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.08 1.22 7.94 -51.93 -0.41 0.81 16 28 H 0.05 0.60 7.02 -51.93 -0.36 0.23 16 29 H 0.06 0.88 5.91 -51.93 -0.31 0.57 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 1.32 8.13 -51.93 -0.42 0.90 16 32 H 0.07 0.92 6.07 -51.92 -0.32 0.60 16 33 H 0.03 0.77 7.87 -51.93 -0.41 0.36 16 34 H 0.04 1.20 7.48 -51.93 -0.39 0.81 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.10 1.30 4.22 -51.93 -0.22 1.08 16 37 H 0.08 1.11 7.05 -51.93 -0.37 0.74 16 38 H 0.09 1.69 5.66 -51.93 -0.29 1.39 16 39 H 0.05 0.66 7.29 -51.93 -0.38 0.28 16 40 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.04 0.62 6.97 -51.93 -0.36 0.25 16 42 H 0.04 0.61 7.07 -51.93 -0.37 0.24 16 43 H 0.09 1.74 5.36 -51.93 -0.28 1.46 16 44 H 0.10 1.07 8.11 -51.93 -0.42 0.65 16 45 H 0.10 1.08 5.85 -51.93 -0.30 0.77 16 46 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 47 H 0.09 0.82 8.14 -51.92 -0.42 0.39 16 48 H 0.09 1.03 7.07 -51.93 -0.37 0.66 16 LS Contribution 358.92 15.07 5.41 5.41 Total: -1.00 -30.72 358.92 -8.49 -39.20 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -8.48 Total: 2.34 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -0.80 Total: -12.89 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.35 Total: -38.54 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.06 Total: -12.49 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.72 -8.49 -39.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405811150.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.515 kcal (2) G-P(sol) polarization free energy of solvation -30.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds