Wall clock time and date at job start Tue Mar 31 2020 05:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47125 * 2 1 4 4 C 1.53003 * 109.47038 * 119.99858 * 2 1 3 5 5 N 1.46498 * 109.47378 * 174.53539 * 4 2 1 6 6 C 1.46505 * 119.99357 * 277.50074 * 5 4 2 7 7 C 1.50700 * 109.46570 * 269.99439 * 6 5 4 8 8 H 1.07998 * 120.00640 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99742 * 180.02562 * 7 6 5 10 10 N 1.31510 * 119.99980 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99998 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47197 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47344 * 120.00134 * 11 9 7 14 14 H 1.48505 * 109.47063 * 240.00055 * 11 9 7 15 15 C 1.34771 * 120.00632 * 97.49681 * 5 4 2 16 16 O 1.21282 * 120.00424 * 175.93621 * 15 5 4 17 17 C 1.50700 * 119.99778 * 356.20259 * 15 5 4 18 18 C 1.52996 * 109.47282 * 175.61139 * 17 15 5 19 19 C 1.53001 * 109.47219 * 300.00053 * 18 17 15 20 20 C 1.53000 * 109.47208 * 60.00048 * 18 17 15 21 21 C 1.53001 * 109.47250 * 180.02562 * 18 17 15 22 22 C 1.53002 * 117.49505 * 248.74531 * 21 18 17 23 23 C 1.53000 * 117.49660 * 180.09007 * 21 18 17 24 24 H 1.09000 * 109.47379 * 300.00174 * 1 2 3 25 25 H 1.09004 * 109.46859 * 60.00464 * 1 2 3 26 26 H 1.09001 * 109.47026 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47300 * 239.99361 * 2 1 3 28 28 H 1.09001 * 109.47289 * 57.62462 * 3 2 1 29 29 H 1.08999 * 109.46846 * 177.62883 * 3 2 1 30 30 H 1.09001 * 109.46830 * 297.62463 * 3 2 1 31 31 H 1.08999 * 109.47045 * 54.52801 * 4 2 1 32 32 H 1.09008 * 109.46916 * 294.52830 * 4 2 1 33 33 H 1.08997 * 109.47409 * 29.99637 * 6 5 4 34 34 H 1.08997 * 109.47180 * 150.00159 * 6 5 4 35 35 H 0.97002 * 120.00170 * 180.02562 * 10 9 7 36 36 H 1.08995 * 109.47660 * 295.61375 * 17 15 5 37 37 H 1.09002 * 109.47154 * 55.61267 * 17 15 5 38 38 H 1.09007 * 109.46464 * 59.99966 * 19 18 17 39 39 H 1.09000 * 109.47319 * 179.97438 * 19 18 17 40 40 H 1.08998 * 109.47634 * 300.00333 * 19 18 17 41 41 H 1.09001 * 109.47038 * 60.00410 * 20 18 17 42 42 H 1.08994 * 109.47300 * 179.97438 * 20 18 17 43 43 H 1.08997 * 109.47055 * 300.00143 * 20 18 17 44 44 H 1.08995 * 115.55152 * 34.41410 * 21 18 17 45 45 H 1.08996 * 117.50408 * 0.02562 * 22 21 18 46 46 H 1.09002 * 117.49638 * 145.02111 * 22 21 18 47 47 H 1.09007 * 117.49819 * 214.97481 * 23 21 18 48 48 H 1.09001 * 117.50315 * 359.97438 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.4991 -0.8362 1.1854 6 6 4.1153 -1.9200 0.4159 7 6 4.3119 -3.1195 1.3067 8 1 4.0079 -3.0789 2.3422 9 6 4.8801 -4.2690 0.7997 10 7 5.2507 -4.3184 -0.4611 11 14 5.1232 -5.7562 1.9036 12 1 4.6262 -5.4462 3.2682 13 1 4.3684 -6.9103 1.3527 14 1 6.5678 -6.0944 1.9674 15 6 4.2744 0.0549 1.8343 16 8 5.4794 -0.0825 1.8428 17 6 3.6437 1.2187 2.5546 18 6 4.7260 2.0087 3.2930 19 6 5.4205 1.0972 4.3069 20 6 5.7543 2.5285 2.2864 21 6 4.0856 3.1899 4.0248 22 6 4.4006 4.5954 3.5086 23 6 5.0094 4.1093 4.8262 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.6423 1.9685 0.8679 29 1 3.1292 1.4427 0.0425 30 1 1.7118 1.9438 -0.9105 31 1 1.5988 -1.7167 1.2996 32 1 1.7588 -0.1539 2.1366 33 1 3.4661 -2.1887 -0.4173 34 1 5.0808 -1.5900 0.0326 35 1 5.6501 -5.1272 -0.8180 36 1 3.1490 1.8681 1.8324 37 1 2.9111 0.8484 3.2717 38 1 5.8767 0.2554 3.7858 39 1 6.1919 1.6599 4.8327 40 1 4.6880 0.7268 5.0240 41 1 5.2596 3.1779 1.5642 42 1 6.5251 3.0917 2.8124 43 1 6.2105 1.6868 1.7655 44 1 3.0859 3.0115 4.4208 45 1 5.0636 4.6785 2.6475 46 1 3.6081 5.3417 3.5655 47 1 4.6173 4.5361 5.7494 48 1 6.0733 3.8724 4.8325 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405811150.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:30 Heat of formation + Delta-G solvation = -43.766848 kcal Electronic energy + Delta-G solvation = -23954.130621 eV Core-core repulsion = 20815.824544 eV Total energy + Delta-G solvation = -3138.306077 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.36678 -39.31722 -37.66923 -35.55928 -34.34603 -34.01385 -30.38028 -28.72822 -28.24122 -27.71750 -26.78403 -25.09300 -23.73922 -22.97298 -21.36783 -19.89996 -19.06528 -18.55728 -18.02606 -17.06729 -16.68213 -16.51351 -16.15664 -15.58047 -15.38334 -14.77547 -14.55842 -14.51466 -14.28571 -14.22044 -13.74964 -13.41510 -13.22251 -13.08282 -12.86113 -12.79365 -12.66997 -12.59515 -12.44293 -12.31262 -12.16272 -11.91367 -11.87865 -11.78164 -11.70928 -11.56907 -11.54799 -11.37815 -11.01714 -10.65454 -10.63533 -10.12400 -9.28485 -8.21189 -6.35707 1.34394 1.36778 1.48535 1.96721 2.33179 2.50342 3.02387 3.07707 3.67734 3.80082 3.93647 4.05238 4.07737 4.11904 4.26136 4.33501 4.35645 4.40549 4.55082 4.64639 4.70100 4.75605 4.81780 4.86028 4.87325 4.90254 4.96835 5.05598 5.07257 5.09468 5.10226 5.16112 5.17032 5.21509 5.26385 5.32429 5.39126 5.43991 5.48172 5.52690 5.58552 5.60252 5.70750 5.94395 6.09859 6.73034 6.92070 7.31291 7.64508 8.85390 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015197 B = 0.005591 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.027799 B = 5006.895507 C = 6240.730247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.113 4.113 3 C -0.145 4.145 4 C 0.111 3.889 5 N -0.603 5.603 6 C 0.267 3.733 7 C -0.536 4.536 8 H 0.050 0.950 9 C 0.008 3.992 10 N -0.929 5.929 11 Si 0.965 3.035 12 H -0.268 1.268 13 H -0.269 1.269 14 H -0.282 1.282 15 C 0.498 3.502 16 O -0.578 6.578 17 C -0.130 4.130 18 C -0.011 4.011 19 C -0.145 4.145 20 C -0.151 4.151 21 C -0.145 4.145 22 C -0.178 4.178 23 C -0.178 4.178 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.051 0.949 27 H 0.043 0.957 28 H 0.083 0.917 29 H 0.032 0.968 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.015 0.985 34 H -0.006 1.006 35 H 0.266 0.734 36 H 0.122 0.878 37 H 0.103 0.897 38 H 0.042 0.958 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.059 0.941 42 H 0.053 0.947 43 H 0.052 0.948 44 H 0.117 0.883 45 H 0.094 0.906 46 H 0.107 0.893 47 H 0.105 0.895 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.096 16.980 7.217 21.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.132 4.132 3 C -0.202 4.202 4 C -0.012 4.012 5 N -0.334 5.334 6 C 0.145 3.855 7 C -0.575 4.575 8 H 0.069 0.931 9 C -0.191 4.191 10 N -0.570 5.570 11 Si 0.789 3.211 12 H -0.192 1.192 13 H -0.194 1.194 14 H -0.208 1.208 15 C 0.288 3.712 16 O -0.459 6.459 17 C -0.169 4.169 18 C -0.012 4.012 19 C -0.202 4.202 20 C -0.208 4.208 21 C -0.163 4.163 22 C -0.215 4.215 23 C -0.215 4.215 24 H 0.094 0.906 25 H 0.084 0.916 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.101 0.899 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.119 0.881 33 H 0.033 0.967 34 H 0.012 0.988 35 H 0.075 0.925 36 H 0.139 0.861 37 H 0.121 0.879 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.135 0.865 45 H 0.112 0.888 46 H 0.125 0.875 47 H 0.124 0.876 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.410 16.778 7.083 20.499 hybrid contribution 0.747 -1.434 -0.042 1.618 sum -8.663 15.344 7.040 18.975 Atomic orbital electron populations 1.21711 0.92319 1.02126 1.03122 1.21494 0.97546 0.96771 0.97430 1.22000 0.99799 0.95311 1.03092 1.21818 0.78872 1.01203 0.99289 1.48219 1.07327 1.27991 1.49816 1.18586 0.91939 0.84334 0.90606 1.21726 1.40533 0.98350 0.96858 0.93149 1.25828 0.94861 1.01885 0.96532 1.70059 1.42634 1.29343 1.14924 0.85410 0.77832 0.78879 0.78937 1.19216 1.19443 1.20811 1.21278 0.86904 0.84054 0.78939 1.90532 1.16743 1.76402 1.62253 1.22134 0.99338 0.94690 1.00750 1.19697 0.93839 0.93434 0.94202 1.21954 1.00289 0.99655 0.98295 1.22158 0.98804 1.00948 0.98899 1.22264 1.00203 0.90130 1.03672 1.23193 1.03921 0.96526 0.97821 1.22966 0.98844 1.03739 0.95951 0.90565 0.91584 0.92987 0.93815 0.89871 0.94896 0.91668 0.91842 0.88080 0.96667 0.98797 0.92531 0.86053 0.87897 0.93858 0.92520 0.92860 0.92251 0.92811 0.92915 0.86469 0.88796 0.87454 0.87635 0.89826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.19 71.98 0.66 -1.95 16 2 C -0.11 -3.00 3.10 -10.79 -0.03 -3.04 16 3 C -0.15 -3.33 7.49 71.98 0.54 -2.79 16 4 C 0.11 3.50 4.89 86.38 0.42 3.92 16 5 N -0.60 -25.71 2.22 -826.15 -1.84 -27.54 16 6 C 0.27 14.68 5.15 85.63 0.44 15.12 16 7 C -0.54 -31.54 9.39 25.60 0.24 -31.30 16 8 H 0.05 2.96 7.81 -2.91 -0.02 2.93 16 9 C 0.01 0.44 5.46 84.66 0.46 0.91 16 10 N -0.93 -57.31 13.29 21.45 0.28 -57.03 16 11 Si 0.96 45.93 29.54 68.60 2.03 47.96 16 12 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 13 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 14 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 15 C 0.50 20.40 5.99 87.66 0.53 20.93 16 16 O -0.58 -29.05 10.99 -3.04 -0.03 -29.08 16 17 C -0.13 -3.63 3.19 29.85 0.10 -3.54 16 18 C -0.01 -0.30 0.62 -52.18 -0.03 -0.34 16 19 C -0.14 -4.50 8.02 71.98 0.58 -3.92 16 20 C -0.15 -4.48 6.78 71.98 0.49 -4.00 16 21 C -0.14 -2.83 5.14 -10.79 -0.06 -2.89 16 22 C -0.18 -3.02 9.57 30.62 0.29 -2.72 16 23 C -0.18 -3.17 9.38 30.62 0.29 -2.88 16 24 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.04 1.44 7.94 -2.39 -0.02 1.42 16 28 H 0.08 1.43 7.02 -2.39 -0.02 1.42 16 29 H 0.03 0.93 5.91 -2.39 -0.01 0.92 16 30 H 0.06 1.31 8.14 -2.39 -0.02 1.30 16 31 H 0.06 2.17 8.13 -2.39 -0.02 2.15 16 32 H 0.10 2.48 6.07 -2.38 -0.01 2.46 16 33 H 0.02 0.87 7.87 -2.39 -0.02 0.85 16 34 H -0.01 -0.39 7.48 -2.39 -0.02 -0.40 16 35 H 0.27 15.34 8.31 -92.71 -0.77 14.56 16 36 H 0.12 2.85 4.22 -2.39 -0.01 2.84 16 37 H 0.10 2.45 7.05 -2.39 -0.02 2.44 16 38 H 0.04 1.74 5.66 -2.38 -0.01 1.73 16 39 H 0.06 1.59 7.29 -2.39 -0.02 1.57 16 40 H 0.05 1.50 8.14 -2.39 -0.02 1.49 16 41 H 0.06 1.55 6.97 -2.39 -0.02 1.53 16 42 H 0.05 1.45 7.07 -2.39 -0.02 1.43 16 43 H 0.05 2.05 5.36 -2.39 -0.01 2.03 16 44 H 0.12 1.93 8.11 -2.39 -0.02 1.91 16 45 H 0.09 1.74 5.85 -2.39 -0.01 1.72 16 46 H 0.11 1.42 8.14 -2.39 -0.02 1.41 16 47 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 48 H 0.08 1.66 7.07 -2.39 -0.02 1.64 16 Total: -1.00 -72.01 358.92 6.27 -65.74 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.92 Total: 18.44 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: 4.91 Total: -18.48 kcal Atomic # 7 Polarization: -83.02 SS G_CDS: -1.55 Total: -84.57 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -0.03 Total: -29.08 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -72.01 6.27 -65.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405811150.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.975 kcal (2) G-P(sol) polarization free energy of solvation -72.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds