Wall clock time and date at job start Tue Mar 31 2020 05:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46859 * 2 1 4 4 C 1.53005 * 109.46842 * 198.11757 * 3 2 1 5 5 C 1.52998 * 109.47077 * 78.12018 * 3 2 1 6 6 N 1.46491 * 109.47451 * 318.11588 * 3 2 1 7 7 C 1.46508 * 119.99957 * 135.85328 * 6 3 2 8 8 C 1.50704 * 109.46705 * 265.64225 * 7 6 3 9 9 H 1.07998 * 120.00318 * 4.95569 * 8 7 6 10 10 C 1.37880 * 119.99672 * 184.96133 * 8 7 6 11 11 N 1.31514 * 120.00030 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00035 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47253 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47250 * 119.99693 * 12 10 8 15 15 H 1.48505 * 109.46878 * 239.99690 * 12 10 8 16 16 C 1.34778 * 120.00059 * 315.85445 * 6 3 2 17 17 O 1.21284 * 119.99664 * 187.93367 * 16 6 3 18 18 C 1.50695 * 120.00009 * 7.93460 * 16 6 3 19 19 H 1.08994 * 109.47456 * 52.33610 * 18 16 6 20 20 C 1.52997 * 109.46956 * 292.33228 * 18 16 6 21 21 C 1.53003 * 109.47165 * 172.33235 * 18 16 6 22 22 C 1.53774 * 113.61820 * 277.50014 * 21 18 16 23 23 C 1.53779 * 87.08203 * 220.01656 * 22 21 18 24 24 C 1.53781 * 113.61553 * 179.97438 * 21 18 16 25 25 H 1.09007 * 109.47246 * 183.77603 * 1 2 3 26 26 H 1.08998 * 109.47283 * 303.77306 * 1 2 3 27 27 H 1.09000 * 109.47284 * 63.77740 * 1 2 3 28 28 H 1.09004 * 109.46593 * 240.00419 * 2 1 3 29 29 H 1.08992 * 109.46996 * 120.00680 * 2 1 3 30 30 H 1.09005 * 109.46572 * 199.23676 * 4 3 2 31 31 H 1.09003 * 109.46839 * 319.23065 * 4 3 2 32 32 H 1.08998 * 109.47434 * 79.23235 * 4 3 2 33 33 H 1.08996 * 109.46926 * 303.66130 * 5 3 2 34 34 H 1.09002 * 109.47555 * 63.65710 * 5 3 2 35 35 H 1.09003 * 109.47202 * 183.65784 * 5 3 2 36 36 H 1.08995 * 109.47169 * 25.63814 * 7 6 3 37 37 H 1.09000 * 109.46967 * 145.64571 * 7 6 3 38 38 H 0.96994 * 120.00304 * 180.02562 * 11 10 8 39 39 H 1.08997 * 109.47292 * 319.05161 * 20 18 16 40 40 H 1.09004 * 109.46992 * 79.05572 * 20 18 16 41 41 H 1.09004 * 109.46980 * 199.04706 * 20 18 16 42 42 H 1.09001 * 112.84466 * 48.80704 * 21 18 16 43 43 H 1.09001 * 113.61100 * 334.56576 * 22 21 18 44 44 H 1.08997 * 113.61824 * 105.46671 * 22 21 18 45 45 H 1.09001 * 113.61369 * 270.88097 * 23 22 21 46 46 H 1.08999 * 113.68863 * 139.99226 * 23 22 21 47 47 H 1.08993 * 113.61593 * 254.53213 * 24 21 18 48 48 H 1.09003 * 113.60874 * 25.43803 * 24 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5025 1.4663 -0.4486 5 6 1.9299 2.0223 1.4116 6 7 1.2333 2.2456 -0.9221 7 6 0.7728 3.5779 -0.5226 8 6 -0.6151 3.4769 0.0562 9 1 -1.0736 2.5089 0.1941 10 6 -1.2995 4.6206 0.4094 11 7 -0.7410 5.7994 0.2418 12 14 -3.0194 4.4955 1.1274 13 1 -3.4173 3.0674 1.2136 14 1 -3.0339 5.0967 2.4852 15 1 -3.9746 5.2232 0.2536 16 6 0.9147 1.7590 -2.1379 17 8 0.3727 2.4738 -2.9541 18 6 1.2319 0.3269 -2.4830 19 1 0.8285 -0.3305 -1.7129 20 6 2.7490 0.1460 -2.5646 21 6 0.6032 -0.0237 -3.8332 22 6 -0.8825 -0.4090 -3.7394 23 6 -0.5841 -1.5005 -4.7807 24 6 0.8699 -1.4708 -4.2798 25 1 -0.3634 -1.0255 0.0677 26 1 -0.3634 0.5713 0.8542 27 1 -0.3634 0.4541 -0.9219 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.9642 2.4019 -0.1327 31 1 4.0345 0.6284 0.0021 32 1 3.5509 1.3857 -1.5345 33 1 0.8988 1.9456 1.7565 34 1 2.5807 1.4647 2.0852 35 1 2.2319 3.0696 1.3988 36 1 1.4501 3.9868 0.2271 37 1 0.7565 4.2330 -1.3936 38 1 -1.2222 6.6039 0.4906 39 1 3.1912 1.0072 -3.0654 40 1 3.1593 0.0605 -1.5583 41 1 2.9772 -0.7588 -3.1280 42 1 0.8158 0.7171 -4.6040 43 1 -1.1708 -0.8026 -2.7647 44 1 -1.5583 0.3661 -4.1007 45 1 -0.6976 -1.1637 -5.8112 46 1 -1.0944 -2.4436 -4.5851 47 1 1.6084 -1.5526 -5.0772 48 1 1.0609 -2.1548 -3.4528 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000410723986.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:53 Heat of formation + Delta-G solvation = 48.726062 kcal Electronic energy + Delta-G solvation = -25150.198830 eV Core-core repulsion = 22015.903546 eV Total energy + Delta-G solvation = -3134.295284 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.02474 -38.27456 -36.60223 -33.94324 -32.32850 -31.29928 -30.71167 -27.65686 -26.91191 -25.61841 -24.71717 -23.41734 -23.06353 -21.68203 -20.39524 -19.20880 -17.73390 -16.52651 -16.14155 -15.67799 -15.13833 -14.89246 -14.61419 -14.36083 -13.86233 -13.59331 -13.27764 -12.77062 -12.65985 -12.37378 -12.25772 -12.07881 -11.96029 -11.83503 -11.73252 -11.39562 -11.32091 -11.04885 -10.98217 -10.88595 -10.64661 -10.50439 -10.37982 -10.30415 -10.06914 -9.97036 -9.91880 -9.70700 -9.47132 -9.40180 -8.62585 -8.35843 -7.47269 -5.97883 -4.01076 3.31370 3.39420 3.41960 3.60004 4.01800 4.48639 4.76017 4.83338 4.88375 5.04175 5.07666 5.15749 5.30205 5.33903 5.37525 5.47334 5.63011 5.65051 5.72237 5.79123 5.82785 5.87964 5.91718 5.94949 5.96933 5.99947 6.05740 6.17431 6.18667 6.24909 6.28834 6.33980 6.40160 6.42086 6.49501 6.52456 6.66382 6.72869 6.81210 6.99424 7.23743 7.58763 7.72565 8.01312 8.33101 8.61542 9.00669 9.28674 9.63776 11.10119 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016657 B = 0.006927 C = 0.005821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.570899 B = 4041.305151 C = 4808.738947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.168 4.168 3 C 0.170 3.830 4 C -0.201 4.201 5 C -0.147 4.147 6 N -0.589 5.589 7 C 0.242 3.758 8 C -0.516 4.516 9 H 0.060 0.940 10 C 0.060 3.940 11 N -0.895 5.895 12 Si 0.891 3.109 13 H -0.274 1.274 14 H -0.285 1.285 15 H -0.284 1.284 16 C 0.519 3.481 17 O -0.543 6.543 18 C -0.145 4.145 19 H 0.133 0.867 20 C -0.182 4.182 21 C -0.087 4.087 22 C -0.135 4.135 23 C -0.143 4.143 24 C -0.136 4.136 25 H 0.044 0.956 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.099 0.901 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.049 0.951 35 H 0.068 0.932 36 H 0.034 0.966 37 H 0.040 0.960 38 H 0.261 0.739 39 H 0.060 0.940 40 H 0.103 0.897 41 H 0.058 0.942 42 H 0.093 0.907 43 H 0.077 0.923 44 H 0.068 0.932 45 H 0.076 0.924 46 H 0.062 0.938 47 H 0.062 0.938 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.236 -15.363 -2.593 17.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.205 4.205 3 C 0.084 3.916 4 C -0.258 4.258 5 C -0.204 4.204 6 N -0.321 5.321 7 C 0.123 3.877 8 C -0.555 4.555 9 H 0.079 0.921 10 C -0.141 4.141 11 N -0.535 5.535 12 Si 0.719 3.281 13 H -0.198 1.198 14 H -0.211 1.211 15 H -0.210 1.210 16 C 0.306 3.694 17 O -0.421 6.421 18 C -0.165 4.165 19 H 0.150 0.850 20 C -0.238 4.238 21 C -0.105 4.105 22 C -0.172 4.172 23 C -0.180 4.180 24 C -0.174 4.174 25 H 0.063 0.937 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.116 0.884 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.113 0.887 33 H 0.093 0.907 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.051 0.949 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.121 0.879 41 H 0.076 0.924 42 H 0.111 0.889 43 H 0.095 0.905 44 H 0.087 0.913 45 H 0.094 0.906 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.911 -14.751 -2.979 16.560 hybrid contribution -1.041 0.198 0.549 1.193 sum 5.871 -14.553 -2.430 15.880 Atomic orbital electron populations 1.22140 0.95103 1.00492 1.04249 1.22904 0.97338 0.96885 1.03366 1.20240 0.89789 0.90552 0.91012 1.23305 0.96226 1.01633 1.04637 1.22109 1.03169 1.01360 0.93792 1.48290 1.51113 1.19126 1.13541 1.19292 0.94260 0.77871 0.96240 1.21521 1.00439 0.92836 1.40708 0.92144 1.24920 0.97827 0.95289 0.96088 1.69943 1.37736 0.97451 1.48344 0.86551 0.84873 0.78072 0.78577 1.19848 1.21114 1.21044 1.20123 0.78806 0.88564 0.81949 1.90636 1.43164 1.60035 1.48253 1.22584 0.97300 0.96982 0.99680 0.84956 1.23043 0.94884 1.01616 1.04284 1.22349 0.95612 0.95777 0.96808 1.22901 0.97164 0.98171 0.98973 1.22800 0.96926 0.99101 0.99183 1.22966 0.96664 0.97260 1.00469 0.93671 0.91411 0.91090 0.88356 0.91651 0.92665 0.92130 0.88675 0.90717 0.93205 0.91301 0.94851 0.94186 0.92971 0.92121 0.87867 0.92354 0.88896 0.90484 0.91272 0.90555 0.91935 0.91934 0.90363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 7.66 37.16 0.28 -2.28 16 2 C -0.17 -2.28 4.15 -26.73 -0.11 -2.40 16 3 C 0.17 2.75 0.70 -131.82 -0.09 2.66 16 4 C -0.20 -2.72 7.35 37.16 0.27 -2.45 16 5 C -0.15 -2.46 7.34 37.16 0.27 -2.19 16 6 N -0.59 -12.19 1.80 -160.18 -0.29 -12.48 16 7 C 0.24 6.25 4.53 -5.19 -0.02 6.22 16 8 C -0.52 -14.22 8.65 -34.44 -0.30 -14.52 16 9 H 0.06 1.65 6.56 -52.49 -0.34 1.30 16 10 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 11 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 12 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 13 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 16 C 0.52 10.78 5.07 -10.99 -0.06 10.72 16 17 O -0.54 -13.86 15.44 5.55 0.09 -13.77 16 18 C -0.15 -2.21 1.08 -91.77 -0.10 -2.31 16 19 H 0.13 1.89 2.66 -51.93 -0.14 1.75 16 20 C -0.18 -2.27 6.55 37.16 0.24 -2.03 16 21 C -0.09 -1.28 2.61 -89.81 -0.23 -1.51 16 22 C -0.13 -1.97 7.62 -25.92 -0.20 -2.17 16 23 C -0.14 -1.65 8.08 -25.90 -0.21 -1.86 16 24 C -0.14 -1.54 6.41 -25.90 -0.17 -1.70 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 1.20 6.26 -51.93 -0.33 0.87 16 27 H 0.07 1.30 4.66 -51.93 -0.24 1.06 16 28 H 0.10 1.19 2.94 -51.93 -0.15 1.04 16 29 H 0.06 0.77 8.01 -51.93 -0.42 0.35 16 30 H 0.05 0.78 8.00 -51.93 -0.42 0.37 16 31 H 0.06 0.65 7.77 -51.93 -0.40 0.25 16 32 H 0.10 1.29 3.45 -52.31 -0.18 1.11 16 33 H 0.07 1.40 6.44 -51.93 -0.33 1.06 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 1.28 6.17 -51.93 -0.32 0.96 16 36 H 0.03 0.87 5.80 -51.93 -0.30 0.57 16 37 H 0.04 1.20 7.46 -51.93 -0.39 0.81 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.06 0.83 7.09 -51.93 -0.37 0.46 16 40 H 0.10 1.17 2.71 -51.93 -0.14 1.03 16 41 H 0.06 0.60 6.92 -51.93 -0.36 0.24 16 42 H 0.09 1.56 7.75 -51.93 -0.40 1.16 16 43 H 0.08 1.10 7.86 -51.93 -0.41 0.69 16 44 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 LS Contribution 338.40 15.07 5.10 5.10 Total: -1.00 -31.63 338.40 -7.63 -39.26 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -7.73 Total: 5.14 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: -0.51 Total: -14.21 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.45 Total: -38.43 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: 0.09 Total: -13.77 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.63 -7.63 -39.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410723986.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.989 kcal (2) G-P(sol) polarization free energy of solvation -31.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds