Wall clock time and date at job start Tue Mar 31 2020 05:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47358 * 2 1 4 4 C 1.53005 * 109.46725 * 305.76262 * 3 2 1 5 5 C 1.53001 * 109.47358 * 185.76419 * 3 2 1 6 6 N 1.46504 * 109.47260 * 65.76179 * 3 2 1 7 7 C 1.46499 * 119.99647 * 242.48953 * 6 3 2 8 8 C 1.50698 * 109.47202 * 97.52333 * 7 6 3 9 9 H 1.07999 * 119.99978 * 5.69844 * 8 7 6 10 10 C 1.37876 * 120.00428 * 185.69824 * 8 7 6 11 11 N 1.31506 * 120.00409 * 179.97438 * 10 8 7 12 12 Si 1.86806 * 119.99451 * 359.97438 * 10 8 7 13 13 H 1.48497 * 109.47171 * 90.00075 * 12 10 8 14 14 H 1.48507 * 109.46961 * 210.00117 * 12 10 8 15 15 H 1.48502 * 109.47156 * 329.99925 * 12 10 8 16 16 C 1.34774 * 119.99853 * 62.48990 * 6 3 2 17 17 O 1.21277 * 119.99894 * 182.99473 * 16 6 3 18 18 C 1.50700 * 120.00073 * 2.99273 * 16 6 3 19 19 H 1.08997 * 109.47420 * 339.99266 * 18 16 6 20 20 C 1.52992 * 109.47094 * 99.99801 * 18 16 6 21 21 C 1.53000 * 109.46989 * 219.99745 * 18 16 6 22 22 C 1.53782 * 113.61640 * 159.13784 * 21 18 16 23 23 C 1.53954 * 87.01831 * 220.04859 * 22 21 18 24 24 C 1.53778 * 87.11632 * 25.36074 * 23 22 21 25 25 H 1.08999 * 109.47444 * 296.75350 * 1 2 3 26 26 H 1.09004 * 109.47004 * 56.75699 * 1 2 3 27 27 H 1.09000 * 109.46782 * 176.75430 * 1 2 3 28 28 H 1.08996 * 109.47793 * 239.99045 * 2 1 3 29 29 H 1.09006 * 109.46951 * 119.99592 * 2 1 3 30 30 H 1.08997 * 109.46996 * 180.02562 * 4 3 2 31 31 H 1.09002 * 109.46966 * 300.00115 * 4 3 2 32 32 H 1.09003 * 109.46901 * 60.00009 * 4 3 2 33 33 H 1.09004 * 109.47055 * 314.64176 * 5 3 2 34 34 H 1.08998 * 109.47073 * 74.63721 * 5 3 2 35 35 H 1.08996 * 109.46909 * 194.63995 * 5 3 2 36 36 H 1.09000 * 109.47051 * 217.51992 * 7 6 3 37 37 H 1.08996 * 109.47182 * 337.51768 * 7 6 3 38 38 H 0.97006 * 119.99900 * 180.02562 * 11 10 8 39 39 H 1.09000 * 109.46917 * 190.68966 * 20 18 16 40 40 H 1.09005 * 109.47445 * 310.68533 * 20 18 16 41 41 H 1.08999 * 109.47397 * 70.69087 * 20 18 16 42 42 H 1.09005 * 112.84879 * 290.33240 * 21 18 16 43 43 H 1.09005 * 113.60865 * 334.56193 * 22 21 18 44 44 H 1.08992 * 113.61539 * 105.46756 * 22 21 18 45 45 H 1.09007 * 113.53482 * 270.80877 * 23 22 21 46 46 H 1.09008 * 113.74252 * 139.94605 * 23 22 21 47 47 H 1.08998 * 113.61666 * 220.09552 * 24 23 22 48 48 H 1.09004 * 113.61575 * 89.18521 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4152 2.2043 -1.1706 5 6 3.5632 1.4449 -0.1449 6 7 1.6682 2.0920 1.2595 7 6 0.7748 3.2529 1.2490 8 6 -0.6338 2.8055 1.5435 9 1 -0.8290 1.7775 1.8112 10 6 -1.6733 3.7083 1.4712 11 7 -2.9026 3.3177 1.7277 12 14 -1.3355 5.4864 1.0089 13 1 -1.4273 5.6407 -0.4651 14 1 -2.3375 6.3666 1.6621 15 1 0.0268 5.8656 1.4624 16 6 2.1482 1.6214 2.4276 17 8 1.7978 2.1247 3.4739 18 6 3.1202 0.4698 2.4337 19 1 3.0488 -0.0710 1.4901 20 6 4.5430 1.0043 2.6089 21 6 2.7844 -0.4749 3.5894 22 6 3.3463 -1.8948 3.4076 23 6 2.0152 -2.4088 3.9858 24 6 1.3824 -1.0987 3.4877 25 1 -0.3634 0.4626 0.9176 26 1 -0.3633 0.5634 -0.8595 27 1 -0.3633 -1.0260 -0.0582 28 1 1.8934 -0.5139 -0.8898 29 1 1.8933 -0.5138 0.8901 30 1 1.7789 3.2318 -1.1709 31 1 1.6918 1.7210 -2.1076 32 1 0.3300 2.2025 -1.0673 33 1 3.9929 0.6993 0.5241 34 1 3.8306 1.2066 -1.1743 35 1 3.9510 2.4305 0.1124 36 1 1.0960 3.9654 2.0088 37 1 0.8077 3.7279 0.2685 38 1 -3.6340 3.9529 1.6765 39 1 5.2577 0.2022 2.4247 40 1 4.7164 1.8150 1.9011 41 1 4.6687 1.3765 3.6256 42 1 2.9998 -0.0419 4.5663 43 1 3.5051 -2.1713 2.3652 44 1 4.2088 -2.1073 4.0391 45 1 2.0209 -2.5058 5.0715 46 1 1.6324 -3.2973 3.4835 47 1 0.6620 -0.6695 4.1840 48 1 1.0035 -1.1571 2.4674 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000410723988.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:55 Heat of formation + Delta-G solvation = -1.660937 kcal Electronic energy + Delta-G solvation = -25154.379962 eV Core-core repulsion = 22017.899734 eV Total energy + Delta-G solvation = -3136.480228 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.55401 -38.21658 -36.65570 -33.53939 -32.45213 -31.77588 -29.90243 -28.37301 -26.64503 -25.78913 -25.17247 -23.29552 -22.94737 -21.56894 -20.28220 -19.19507 -17.76388 -17.00467 -15.89466 -15.71504 -15.14721 -14.78288 -14.66653 -14.20418 -13.80933 -13.52531 -13.27483 -12.99020 -12.82130 -12.44199 -12.25000 -12.19903 -12.07702 -12.00784 -11.64877 -11.55641 -11.42858 -11.24385 -11.12350 -11.00668 -10.78717 -10.53237 -10.44163 -10.39051 -10.31237 -10.09036 -10.06675 -9.82461 -9.53381 -9.18985 -8.67790 -8.51571 -7.55039 -6.01483 -3.97540 3.27867 3.37231 3.40927 3.52001 3.87433 4.44064 4.71599 4.80320 4.87104 4.99977 5.06591 5.19062 5.27304 5.33060 5.34907 5.39602 5.58802 5.59913 5.69623 5.80276 5.81908 5.87343 5.90129 5.95229 5.98450 6.02944 6.04773 6.09864 6.14040 6.15286 6.26289 6.35623 6.39086 6.44558 6.49376 6.56053 6.61219 6.77178 6.78802 6.85304 7.07083 7.21169 7.52181 7.70307 8.44850 8.56660 9.06181 9.19023 9.59919 11.11422 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.018037 B = 0.006815 C = 0.006329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.027088 B = 4107.678680 C = 4423.003183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.144 4.144 3 C 0.168 3.832 4 C -0.155 4.155 5 C -0.181 4.181 6 N -0.584 5.584 7 C 0.211 3.789 8 C -0.514 4.514 9 H 0.084 0.916 10 C 0.071 3.929 11 N -0.899 5.899 12 Si 0.868 3.132 13 H -0.277 1.277 14 H -0.286 1.286 15 H -0.267 1.267 16 C 0.520 3.480 17 O -0.537 6.537 18 C -0.128 4.128 19 H 0.112 0.888 20 C -0.142 4.142 21 C -0.089 4.089 22 C -0.135 4.135 23 C -0.142 4.142 24 C -0.138 4.138 25 H 0.089 0.911 26 H 0.058 0.942 27 H 0.037 0.963 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.028 0.972 37 H 0.033 0.967 38 H 0.262 0.738 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.093 0.907 43 H 0.078 0.922 44 H 0.063 0.937 45 H 0.076 0.924 46 H 0.064 0.936 47 H 0.070 0.930 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.059 -9.136 -3.969 17.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.181 4.181 3 C 0.082 3.918 4 C -0.212 4.212 5 C -0.239 4.239 6 N -0.316 5.316 7 C 0.090 3.910 8 C -0.552 4.552 9 H 0.101 0.899 10 C -0.131 4.131 11 N -0.538 5.538 12 Si 0.695 3.305 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.191 1.191 16 C 0.307 3.693 17 O -0.414 6.414 18 C -0.149 4.149 19 H 0.129 0.871 20 C -0.199 4.199 21 C -0.108 4.108 22 C -0.173 4.173 23 C -0.179 4.179 24 C -0.176 4.176 25 H 0.107 0.893 26 H 0.077 0.923 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.046 0.954 37 H 0.051 0.949 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.111 0.889 43 H 0.096 0.904 44 H 0.082 0.918 45 H 0.095 0.905 46 H 0.082 0.918 47 H 0.089 0.911 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 13.665 -8.762 -3.411 16.588 hybrid contribution -0.074 1.052 -0.338 1.107 sum 13.591 -7.710 -3.749 16.069 Atomic orbital electron populations 1.22040 0.94068 1.00237 1.05384 1.22350 0.98320 0.95718 1.01761 1.20312 0.93136 0.92806 0.85539 1.22182 1.03703 0.99549 0.95729 1.22913 0.95865 1.02838 1.02283 1.48066 1.47324 1.31798 1.04427 1.19706 0.89990 0.84334 0.96924 1.21412 0.89059 0.98521 1.46211 0.89862 1.24838 0.95026 0.98026 0.95189 1.69888 0.99131 1.34950 1.49819 0.86981 0.78668 0.86140 0.78731 1.20245 1.21160 1.19134 1.20141 0.81438 0.84055 0.83713 1.90651 1.59723 1.59751 1.31250 1.22070 0.95388 0.96229 1.01183 0.87113 1.21843 0.94408 1.01028 1.02637 1.22395 0.96761 0.93071 0.98527 1.22999 0.97088 0.96234 1.00950 1.22827 0.96891 0.97697 1.00525 1.22978 0.96765 0.95602 1.02230 0.89259 0.92311 0.94395 0.92073 0.90630 0.92429 0.92463 0.89479 0.90593 0.92063 0.92122 0.95378 0.94887 0.92788 0.92142 0.91990 0.92209 0.88912 0.90381 0.91798 0.90526 0.91773 0.91100 0.89845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 9.26 37.16 0.34 -2.46 16 2 C -0.14 -2.11 4.64 -26.73 -0.12 -2.24 16 3 C 0.17 2.65 0.74 -131.81 -0.10 2.55 16 4 C -0.15 -2.43 6.57 37.16 0.24 -2.18 16 5 C -0.18 -2.29 7.03 37.16 0.26 -2.02 16 6 N -0.58 -11.73 1.98 -160.18 -0.32 -12.05 16 7 C 0.21 5.06 3.51 -5.20 -0.02 5.04 16 8 C -0.51 -14.22 9.06 -34.44 -0.31 -14.53 16 9 H 0.08 2.51 5.68 -52.49 -0.30 2.21 16 10 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 11 N -0.90 -27.37 13.96 55.43 0.77 -26.59 16 12 Si 0.87 21.42 27.36 -169.99 -4.65 16.77 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 15 H -0.27 -6.46 6.71 56.52 0.38 -6.09 16 16 C 0.52 10.56 5.54 -10.99 -0.06 10.50 16 17 O -0.54 -13.46 16.28 5.56 0.09 -13.37 16 18 C -0.13 -1.92 0.95 -91.78 -0.09 -2.01 16 19 H 0.11 1.50 2.44 -51.93 -0.13 1.37 16 20 C -0.14 -1.81 7.90 37.15 0.29 -1.52 16 21 C -0.09 -1.29 2.69 -89.80 -0.24 -1.53 16 22 C -0.14 -1.52 7.63 -25.83 -0.20 -1.72 16 23 C -0.14 -1.71 8.09 -25.83 -0.21 -1.92 16 24 C -0.14 -2.15 7.12 -25.92 -0.18 -2.33 16 25 H 0.09 1.95 4.72 -51.93 -0.24 1.71 16 26 H 0.06 1.04 6.15 -51.93 -0.32 0.72 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.08 1.09 3.03 -51.93 -0.16 0.93 16 30 H 0.06 0.90 7.08 -51.93 -0.37 0.54 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.09 1.61 5.64 -51.93 -0.29 1.31 16 33 H 0.08 0.88 3.63 -51.93 -0.19 0.69 16 34 H 0.06 0.64 8.06 -51.93 -0.42 0.22 16 35 H 0.06 0.80 7.52 -51.93 -0.39 0.41 16 36 H 0.03 0.75 7.15 -51.93 -0.37 0.38 16 37 H 0.03 0.75 4.51 -51.93 -0.23 0.51 16 38 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.79 6.01 -51.93 -0.31 0.48 16 41 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 42 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 43 H 0.08 0.80 7.99 -51.93 -0.41 0.39 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 46 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 47 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 48 H 0.08 1.33 6.42 -51.93 -0.33 1.00 16 LS Contribution 342.41 15.07 5.16 5.16 Total: -1.00 -31.93 342.41 -7.28 -39.21 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -7.85 Total: 5.32 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: -0.49 Total: -14.45 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.46 Total: -38.64 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.09 Total: -13.37 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.65 Total: 16.77 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.93 -7.28 -39.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000410723988.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.548 kcal (2) G-P(sol) polarization free energy of solvation -31.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds