Wall clock time and date at job start Tue Mar 31 2020 06:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47128 * 2 1 4 4 H 1.09005 * 109.46843 * 185.68633 * 3 2 1 5 5 C 1.52996 * 109.46780 * 305.68414 * 3 2 1 6 6 C 1.52998 * 109.47291 * 295.26414 * 5 3 2 7 7 C 1.53001 * 109.47364 * 174.73413 * 6 5 3 8 8 C 1.53003 * 109.47216 * 294.72912 * 6 5 3 9 9 C 1.50697 * 109.47434 * 65.68803 * 3 2 1 10 10 O 1.21287 * 119.99757 * 253.34556 * 9 3 2 11 11 N 1.34770 * 120.00298 * 73.33881 * 9 3 2 12 12 C 1.46497 * 120.00164 * 355.32703 * 11 9 3 13 13 C 1.50708 * 109.47081 * 95.38867 * 12 11 9 14 14 H 1.07995 * 119.99517 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99971 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00161 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99863 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47055 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47113 * 120.00137 * 17 15 13 20 20 H 1.48505 * 109.47088 * 240.00166 * 17 15 13 21 21 C 1.46500 * 120.00139 * 175.32992 * 11 9 3 22 22 C 1.53001 * 109.47576 * 94.82769 * 21 11 9 23 23 C 1.52994 * 117.49768 * 243.75247 * 22 21 11 24 24 C 1.52995 * 117.50106 * 175.08836 * 22 21 11 25 25 H 1.08999 * 109.47557 * 305.53017 * 1 2 3 26 26 H 1.08998 * 109.46558 * 65.53089 * 1 2 3 27 27 H 1.08995 * 109.46813 * 185.52630 * 1 2 3 28 28 H 1.08996 * 109.47639 * 239.99383 * 2 1 3 29 29 H 1.09007 * 109.47148 * 119.99412 * 2 1 3 30 30 H 1.08997 * 109.47377 * 55.26359 * 5 3 2 31 31 H 1.09001 * 109.47086 * 175.26457 * 5 3 2 32 32 H 1.08996 * 109.47436 * 54.73040 * 6 5 3 33 33 H 1.08996 * 109.47149 * 59.99450 * 7 6 5 34 34 H 1.09002 * 109.47369 * 180.02562 * 7 6 5 35 35 H 1.09008 * 109.46705 * 299.99642 * 7 6 5 36 36 H 1.08998 * 109.47436 * 179.97438 * 8 6 5 37 37 H 1.08991 * 109.47462 * 300.00519 * 8 6 5 38 38 H 1.09001 * 109.46821 * 60.00328 * 8 6 5 39 39 H 1.08995 * 109.47539 * 215.39295 * 12 11 9 40 40 H 1.08999 * 109.47451 * 335.39488 * 12 11 9 41 41 H 0.97005 * 120.00183 * 179.97438 * 16 15 13 42 42 H 1.09007 * 109.47123 * 214.83115 * 21 11 9 43 43 H 1.08998 * 109.46803 * 334.82553 * 21 11 9 44 44 H 1.09003 * 115.54737 * 29.41732 * 22 21 11 45 45 H 1.09001 * 117.50282 * 359.97438 * 23 22 21 46 46 H 1.09004 * 117.50319 * 145.01693 * 23 22 21 47 47 H 1.08995 * 117.49768 * 214.97978 * 24 22 21 48 48 H 1.09003 * 117.49982 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1253 1.4442 -0.1018 5 6 1.4167 2.2037 -1.1717 6 6 1.9015 1.5970 -2.4898 7 6 1.1786 2.2708 -3.6579 8 6 3.4093 1.8167 -2.6284 9 6 1.6560 2.1112 1.2948 10 8 0.7704 2.9397 1.3100 11 7 2.2965 1.7884 2.4358 12 6 3.2943 0.7158 2.4375 13 6 4.6693 1.3085 2.2665 14 1 4.7880 2.3773 2.1670 15 6 5.7757 0.4863 2.2371 16 7 5.6311 -0.8153 2.3578 17 14 7.4800 1.2210 2.0259 18 1 7.3719 2.6977 1.9123 19 1 8.3177 0.8745 3.2020 20 1 8.1054 0.6749 0.7946 21 6 1.9949 2.5101 3.6745 22 6 0.9426 1.7371 4.4720 23 6 -0.4114 2.4134 4.6960 24 6 0.5746 2.2699 5.8581 25 1 -0.3634 0.5972 0.8363 26 1 -0.3632 0.4257 -0.9354 27 1 -0.3633 -1.0229 0.0990 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 0.3306 2.1306 -1.1158 31 1 1.7133 3.2515 -1.1232 32 1 1.6879 0.5282 -2.4982 33 1 1.3923 3.3395 -3.6495 34 1 1.5237 1.8382 -4.5970 35 1 0.1044 2.1142 -3.5593 36 1 3.7549 1.3840 -3.5672 37 1 3.6231 2.8854 -2.6200 38 1 3.9244 1.3366 -1.7962 39 1 3.2462 0.1763 3.3833 40 1 3.0904 0.0285 1.6164 41 1 6.4094 -1.3938 2.3367 42 1 2.9033 2.6064 4.2693 43 1 1.6119 3.5017 3.4331 44 1 0.9484 0.6560 4.3335 45 1 -0.5524 3.4091 4.2757 46 1 -1.2964 1.7771 4.7055 47 1 0.3379 1.5392 6.6315 48 1 1.0825 3.1709 6.2022 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413355103.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:40 Heat of formation + Delta-G solvation = -42.049269 kcal Electronic energy + Delta-G solvation = -23929.450747 eV Core-core repulsion = 20791.219149 eV Total energy + Delta-G solvation = -3138.231597 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.67740 -37.36136 -36.30365 -34.70406 -33.23696 -32.44506 -28.66991 -27.76520 -26.90250 -26.38750 -24.29063 -23.10392 -22.07399 -21.61309 -20.30806 -19.08449 -17.87389 -16.63496 -16.25980 -15.55840 -15.39870 -14.78823 -14.48767 -14.41770 -13.94356 -13.65067 -13.53894 -13.09381 -12.72149 -12.41841 -12.25182 -12.13059 -11.93562 -11.87359 -11.56444 -11.35064 -11.22168 -11.18447 -11.09307 -10.91912 -10.86097 -10.67887 -10.42305 -10.34535 -10.14642 -10.06261 -10.04962 -9.87246 -9.58520 -9.49663 -8.79752 -8.48819 -7.64015 -6.17457 -4.23926 3.20998 3.30016 3.33801 3.52294 3.92218 4.22812 4.34342 5.05841 5.12123 5.14451 5.15480 5.18978 5.28062 5.36232 5.46459 5.48042 5.60773 5.76664 5.82765 5.85316 5.86251 5.88395 5.97482 5.99951 6.08619 6.14519 6.17653 6.18530 6.29973 6.31768 6.35649 6.39482 6.39916 6.42926 6.49737 6.59139 6.61060 6.67841 6.80667 6.88910 6.92332 7.28079 7.62070 7.77495 8.08466 8.44877 8.82177 9.12769 9.43772 10.88991 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.009229 B = 0.008426 C = 0.005023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3033.240787 B = 3322.365380 C = 5573.110206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.106 4.106 4 H 0.108 0.892 5 C -0.093 4.093 6 C -0.098 4.098 7 C -0.144 4.144 8 C -0.152 4.152 9 C 0.523 3.477 10 O -0.574 6.574 11 N -0.593 5.593 12 C 0.225 3.775 13 C -0.535 4.535 14 H 0.060 0.940 15 C 0.066 3.934 16 N -0.891 5.891 17 Si 0.892 3.108 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.282 1.282 21 C 0.149 3.851 22 C -0.156 4.156 23 C -0.175 4.175 24 C -0.182 4.182 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.051 0.949 36 H 0.048 0.952 37 H 0.051 0.949 38 H 0.066 0.934 39 H 0.032 0.968 40 H 0.055 0.945 41 H 0.264 0.736 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.102 0.898 45 H 0.093 0.907 46 H 0.085 0.915 47 H 0.089 0.911 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.835 2.132 -3.944 9.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.127 4.127 4 H 0.126 0.874 5 C -0.131 4.131 6 C -0.117 4.117 7 C -0.202 4.202 8 C -0.209 4.209 9 C 0.312 3.688 10 O -0.456 6.456 11 N -0.322 5.322 12 C 0.105 3.895 13 C -0.574 4.574 14 H 0.078 0.922 15 C -0.137 4.137 16 N -0.529 5.529 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.208 1.208 21 C 0.026 3.974 22 C -0.176 4.176 23 C -0.212 4.212 24 C -0.219 4.219 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.050 0.950 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.121 0.879 45 H 0.111 0.889 46 H 0.104 0.896 47 H 0.108 0.892 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.162 2.380 -3.918 9.361 hybrid contribution 1.205 0.172 0.061 1.219 sum -6.957 2.552 -3.856 8.354 Atomic orbital electron populations 1.21850 0.96265 1.00807 1.01995 1.21673 0.95600 0.95101 1.03359 1.21335 1.03303 0.95644 0.92371 0.87400 1.21467 1.00692 0.98957 0.91953 1.21167 0.95542 1.00297 0.94667 1.21822 0.99999 1.00592 0.97743 1.21917 0.95620 1.01658 1.01693 1.20491 0.80884 0.81894 0.85516 1.90562 1.31989 1.35990 1.87019 1.48154 1.40022 1.36997 1.07073 1.19710 0.85557 0.85158 0.99030 1.21540 0.91128 0.93942 1.50782 0.92169 1.24914 0.99181 0.94737 0.94891 1.69926 1.30490 1.02814 1.49675 0.86524 0.84129 0.79498 0.77852 1.19693 1.20897 1.20820 1.20816 0.96690 0.94539 0.85393 1.22768 0.97046 1.00058 0.97690 1.22950 0.93477 1.02264 1.02539 1.22909 1.04294 1.03116 0.91627 0.92594 0.92704 0.93374 0.91386 0.90000 0.91260 0.92127 0.91012 0.92936 0.93151 0.93018 0.93331 0.92971 0.91535 0.95019 0.92695 0.92639 0.90296 0.90963 0.87942 0.88851 0.89626 0.89248 0.89010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.12 37.16 0.34 -1.96 16 2 C -0.12 -1.99 4.93 -26.73 -0.13 -2.12 16 3 C -0.11 -1.91 1.55 -91.77 -0.14 -2.05 16 4 H 0.11 2.15 5.72 -51.93 -0.30 1.85 16 5 C -0.09 -1.48 3.11 -26.73 -0.08 -1.56 16 6 C -0.10 -1.33 2.78 -90.62 -0.25 -1.58 16 7 C -0.14 -1.67 9.19 37.16 0.34 -1.33 16 8 C -0.15 -2.11 8.96 37.16 0.33 -1.77 16 9 C 0.52 10.80 5.89 -10.99 -0.06 10.73 16 10 O -0.57 -12.75 15.51 5.55 0.09 -12.66 16 11 N -0.59 -12.45 2.46 -175.06 -0.43 -12.88 16 12 C 0.23 5.24 4.68 -5.19 -0.02 5.21 16 13 C -0.54 -13.70 9.16 -34.44 -0.32 -14.01 16 14 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 15 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -24.08 13.29 55.43 0.74 -23.35 16 17 Si 0.89 20.36 29.54 -169.99 -5.02 15.34 16 18 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 C 0.15 2.85 5.73 -4.04 -0.02 2.83 16 22 C -0.16 -2.63 6.01 -90.63 -0.54 -3.17 16 23 C -0.18 -2.61 10.18 -26.70 -0.27 -2.88 16 24 C -0.18 -2.52 10.25 -26.69 -0.27 -2.80 16 25 H 0.05 0.95 7.16 -51.93 -0.37 0.58 16 26 H 0.05 0.76 6.57 -51.93 -0.34 0.42 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.07 1.03 6.73 -51.93 -0.35 0.68 16 29 H 0.08 1.52 5.45 -51.93 -0.28 1.23 16 30 H 0.07 1.12 6.14 -51.93 -0.32 0.80 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.07 0.95 6.45 -51.93 -0.33 0.62 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 1.04 6.48 -51.93 -0.34 0.70 16 39 H 0.03 0.79 8.11 -51.93 -0.42 0.37 16 40 H 0.06 1.29 4.05 -51.93 -0.21 1.08 16 41 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 42 H 0.08 1.52 8.11 -51.93 -0.42 1.10 16 43 H 0.07 1.39 7.08 -51.93 -0.37 1.03 16 44 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 45 H 0.09 1.43 8.03 -51.93 -0.42 1.02 16 46 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 370.87 15.07 5.59 5.59 Total: -1.00 -27.31 370.87 -8.92 -36.22 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -8.66 Total: 6.60 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -1.21 Total: -14.86 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 0.31 Total: -36.23 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.09 Total: -12.66 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -27.31 -8.92 -36.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413355103.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.826 kcal (2) G-P(sol) polarization free energy of solvation -27.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds