Wall clock time and date at job start Tue Mar 31 2020 06:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47128 * 2 1 4 4 H 1.09005 * 109.46843 * 185.68633 * 3 2 1 5 5 C 1.52996 * 109.46780 * 305.68414 * 3 2 1 6 6 C 1.52998 * 109.47291 * 295.26414 * 5 3 2 7 7 C 1.53001 * 109.47364 * 174.73413 * 6 5 3 8 8 C 1.53003 * 109.47216 * 294.72912 * 6 5 3 9 9 C 1.50697 * 109.47434 * 65.68803 * 3 2 1 10 10 O 1.21287 * 119.99757 * 253.34556 * 9 3 2 11 11 N 1.34770 * 120.00298 * 73.33881 * 9 3 2 12 12 C 1.46497 * 120.00164 * 355.32703 * 11 9 3 13 13 C 1.50708 * 109.47081 * 95.38867 * 12 11 9 14 14 H 1.07995 * 119.99517 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99971 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00161 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99863 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47055 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47113 * 120.00137 * 17 15 13 20 20 H 1.48505 * 109.47088 * 240.00166 * 17 15 13 21 21 C 1.46500 * 120.00139 * 175.32992 * 11 9 3 22 22 C 1.53001 * 109.47576 * 94.82769 * 21 11 9 23 23 C 1.52994 * 117.49768 * 243.75247 * 22 21 11 24 24 C 1.52995 * 117.50106 * 175.08836 * 22 21 11 25 25 H 1.08999 * 109.47557 * 305.53017 * 1 2 3 26 26 H 1.08998 * 109.46558 * 65.53089 * 1 2 3 27 27 H 1.08995 * 109.46813 * 185.52630 * 1 2 3 28 28 H 1.08996 * 109.47639 * 239.99383 * 2 1 3 29 29 H 1.09007 * 109.47148 * 119.99412 * 2 1 3 30 30 H 1.08997 * 109.47377 * 55.26359 * 5 3 2 31 31 H 1.09001 * 109.47086 * 175.26457 * 5 3 2 32 32 H 1.08996 * 109.47436 * 54.73040 * 6 5 3 33 33 H 1.08996 * 109.47149 * 59.99450 * 7 6 5 34 34 H 1.09002 * 109.47369 * 180.02562 * 7 6 5 35 35 H 1.09008 * 109.46705 * 299.99642 * 7 6 5 36 36 H 1.08998 * 109.47436 * 179.97438 * 8 6 5 37 37 H 1.08991 * 109.47462 * 300.00519 * 8 6 5 38 38 H 1.09001 * 109.46821 * 60.00328 * 8 6 5 39 39 H 1.08995 * 109.47539 * 215.39295 * 12 11 9 40 40 H 1.08999 * 109.47451 * 335.39488 * 12 11 9 41 41 H 0.97005 * 120.00183 * 179.97438 * 16 15 13 42 42 H 1.09007 * 109.47123 * 214.83115 * 21 11 9 43 43 H 1.08998 * 109.46803 * 334.82553 * 21 11 9 44 44 H 1.09003 * 115.54737 * 29.41732 * 22 21 11 45 45 H 1.09001 * 117.50282 * 359.97438 * 23 22 21 46 46 H 1.09004 * 117.50319 * 145.01693 * 23 22 21 47 47 H 1.08995 * 117.49768 * 214.97978 * 24 22 21 48 48 H 1.09003 * 117.49982 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1253 1.4442 -0.1018 5 6 1.4167 2.2037 -1.1717 6 6 1.9015 1.5970 -2.4898 7 6 1.1786 2.2708 -3.6579 8 6 3.4093 1.8167 -2.6284 9 6 1.6560 2.1112 1.2948 10 8 0.7704 2.9397 1.3100 11 7 2.2965 1.7884 2.4358 12 6 3.2943 0.7158 2.4375 13 6 4.6693 1.3085 2.2665 14 1 4.7880 2.3773 2.1670 15 6 5.7757 0.4863 2.2371 16 7 5.6311 -0.8153 2.3578 17 14 7.4800 1.2210 2.0259 18 1 7.3719 2.6977 1.9123 19 1 8.3177 0.8745 3.2020 20 1 8.1054 0.6749 0.7946 21 6 1.9949 2.5101 3.6745 22 6 0.9426 1.7371 4.4720 23 6 -0.4114 2.4134 4.6960 24 6 0.5746 2.2699 5.8581 25 1 -0.3634 0.5972 0.8363 26 1 -0.3632 0.4257 -0.9354 27 1 -0.3633 -1.0229 0.0990 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 0.3306 2.1306 -1.1158 31 1 1.7133 3.2515 -1.1232 32 1 1.6879 0.5282 -2.4982 33 1 1.3923 3.3395 -3.6495 34 1 1.5237 1.8382 -4.5970 35 1 0.1044 2.1142 -3.5593 36 1 3.7549 1.3840 -3.5672 37 1 3.6231 2.8854 -2.6200 38 1 3.9244 1.3366 -1.7962 39 1 3.2462 0.1763 3.3833 40 1 3.0904 0.0285 1.6164 41 1 6.4094 -1.3938 2.3367 42 1 2.9033 2.6064 4.2693 43 1 1.6119 3.5017 3.4331 44 1 0.9484 0.6560 4.3335 45 1 -0.5524 3.4091 4.2757 46 1 -1.2964 1.7771 4.7055 47 1 0.3379 1.5392 6.6315 48 1 1.0825 3.1709 6.2022 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413355103.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:40 Heat of formation + Delta-G solvation = -53.543690 kcal Electronic energy + Delta-G solvation = -23929.949182 eV Core-core repulsion = 20791.219149 eV Total energy + Delta-G solvation = -3138.730033 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.27194 -38.67488 -37.65615 -36.44793 -34.54297 -34.35825 -30.04913 -29.50739 -27.99714 -27.96303 -25.62085 -24.99196 -23.25969 -22.97997 -21.65111 -20.41753 -19.42121 -18.60014 -17.84314 -17.24424 -16.72544 -16.30898 -16.18508 -15.84303 -15.25109 -14.96648 -14.78951 -14.47222 -14.25219 -13.97877 -13.83616 -13.60261 -13.34163 -13.11092 -12.96066 -12.85278 -12.76583 -12.57078 -12.45991 -12.36651 -12.35239 -12.11997 -11.97436 -11.77490 -11.56616 -11.48603 -11.33204 -11.28234 -11.12295 -10.84961 -10.62936 -10.30362 -9.39999 -8.18728 -6.32239 1.38665 1.42329 1.52189 1.85393 2.31362 2.46058 2.94451 3.10939 3.70276 3.83258 3.88088 3.96252 4.01761 4.12350 4.19600 4.23816 4.36644 4.37763 4.47162 4.56720 4.73288 4.74668 4.75658 4.81385 4.81870 4.87212 4.90911 4.97093 4.99395 5.04960 5.06830 5.08666 5.19448 5.21484 5.24886 5.25454 5.27187 5.35038 5.38281 5.47221 5.58673 5.62421 5.70280 5.90569 6.09245 6.63814 6.85962 7.34509 7.47602 8.86620 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.009229 B = 0.008426 C = 0.005023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3033.240787 B = 3322.365380 C = 5573.110206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C -0.102 4.102 4 H 0.087 0.913 5 C -0.084 4.084 6 C -0.093 4.093 7 C -0.140 4.140 8 C -0.151 4.151 9 C 0.518 3.482 10 O -0.591 6.591 11 N -0.597 5.597 12 C 0.241 3.759 13 C -0.545 4.545 14 H 0.048 0.952 15 C 0.026 3.974 16 N -0.916 5.916 17 Si 0.950 3.050 18 H -0.273 1.273 19 H -0.279 1.279 20 H -0.275 1.275 21 C 0.149 3.851 22 C -0.181 4.181 23 C -0.169 4.169 24 C -0.157 4.157 25 H 0.031 0.969 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.044 0.956 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.049 0.951 38 H 0.042 0.958 39 H 0.011 0.989 40 H 0.055 0.945 41 H 0.267 0.733 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.098 0.902 47 H 0.109 0.891 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.296 2.090 -4.750 9.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.152 4.152 3 C -0.123 4.123 4 H 0.105 0.895 5 C -0.122 4.122 6 C -0.112 4.112 7 C -0.198 4.198 8 C -0.208 4.208 9 C 0.308 3.692 10 O -0.474 6.474 11 N -0.327 5.327 12 C 0.121 3.879 13 C -0.583 4.583 14 H 0.066 0.934 15 C -0.175 4.175 16 N -0.556 5.556 17 Si 0.776 3.224 18 H -0.198 1.198 19 H -0.204 1.204 20 H -0.201 1.201 21 C 0.026 3.974 22 C -0.201 4.201 23 C -0.206 4.206 24 C -0.194 4.194 25 H 0.051 0.949 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.104 0.896 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.029 0.971 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.107 0.893 45 H 0.106 0.894 46 H 0.117 0.883 47 H 0.127 0.873 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.629 2.344 -4.716 10.109 hybrid contribution 1.334 0.206 0.345 1.393 sum -7.295 2.550 -4.371 8.878 Atomic orbital electron populations 1.21775 0.94754 1.01715 1.01794 1.21621 0.96820 0.93770 1.03026 1.21334 1.02178 0.96851 0.91911 0.89474 1.21414 1.00470 0.97872 0.92439 1.21146 0.95333 1.00734 0.93967 1.21787 1.00238 1.00365 0.97383 1.21904 0.95832 1.01405 1.01671 1.20962 0.80456 0.81653 0.86128 1.90537 1.32727 1.36770 1.87346 1.48174 1.39660 1.36670 1.08153 1.19379 0.85304 0.85468 0.97767 1.21682 0.92447 0.93376 1.50841 0.93400 1.25562 1.02337 0.95046 0.94555 1.70005 1.31538 1.03742 1.50265 0.85620 0.80159 0.78593 0.78012 1.19809 1.20430 1.20081 1.20858 0.97133 0.94529 0.84921 1.22582 0.98020 0.99084 1.00400 1.22976 0.93033 1.01801 1.02751 1.23028 1.02352 1.03456 0.90591 0.94934 0.91101 0.91472 0.89556 0.92339 0.91159 0.93683 0.90249 0.93106 0.91463 0.92236 0.91414 0.93216 0.93900 0.97069 0.92743 0.92348 0.91172 0.91489 0.89298 0.89406 0.88311 0.87257 0.87925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.17 9.12 71.98 0.66 -3.51 16 2 C -0.12 -3.80 4.93 30.60 0.15 -3.65 16 3 C -0.10 -3.74 1.55 -11.54 -0.02 -3.76 16 4 H 0.09 3.59 5.72 -2.38 -0.01 3.58 16 5 C -0.08 -2.65 3.11 30.59 0.10 -2.55 16 6 C -0.09 -2.37 2.78 -10.79 -0.03 -2.40 16 7 C -0.14 -2.91 9.19 71.98 0.66 -2.25 16 8 C -0.15 -4.05 8.96 71.98 0.64 -3.41 16 9 C 0.52 21.99 5.89 87.66 0.52 22.50 16 10 O -0.59 -26.74 15.51 -3.05 -0.05 -26.79 16 11 N -0.60 -26.05 2.46 -826.15 -2.03 -28.08 16 12 C 0.24 11.67 4.68 85.64 0.40 12.07 16 13 C -0.54 -28.61 9.16 25.60 0.23 -28.38 16 14 H 0.05 2.59 7.81 -2.91 -0.02 2.56 16 15 C 0.03 1.34 5.46 84.65 0.46 1.80 16 16 N -0.92 -50.02 13.29 21.45 0.28 -49.74 16 17 Si 0.95 41.89 29.54 68.60 2.03 43.91 16 18 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 19 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 20 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 21 C 0.15 5.86 5.73 86.38 0.49 6.35 16 22 C -0.18 -6.16 6.01 -10.80 -0.06 -6.22 16 23 C -0.17 -4.87 10.18 30.62 0.31 -4.56 16 24 C -0.16 -4.11 10.25 30.62 0.31 -3.80 16 25 H 0.03 1.09 7.16 -2.39 -0.02 1.07 16 26 H 0.07 1.83 6.57 -2.39 -0.02 1.81 16 27 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.09 2.52 6.73 -2.39 -0.02 2.50 16 29 H 0.06 2.21 5.45 -2.38 -0.01 2.20 16 30 H 0.07 2.20 6.14 -2.39 -0.01 2.18 16 31 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.08 1.91 6.45 -2.39 -0.02 1.90 16 33 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.04 1.34 6.48 -2.39 -0.02 1.33 16 39 H 0.01 0.58 8.11 -2.39 -0.02 0.57 16 40 H 0.05 2.66 4.05 -2.39 -0.01 2.65 16 41 H 0.27 13.80 8.31 -92.70 -0.77 13.03 16 42 H 0.07 2.81 8.11 -2.38 -0.02 2.79 16 43 H 0.07 2.67 7.08 -2.39 -0.02 2.65 16 44 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 45 H 0.09 2.64 8.03 -2.39 -0.02 2.62 16 46 H 0.10 2.58 8.14 -2.38 -0.02 2.56 16 47 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 48 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -58.65 370.87 5.97 -52.67 By element: Atomic # 1 Polarization: 28.87 SS G_CDS: 0.91 Total: 29.78 kcal Atomic # 6 Polarization: -26.59 SS G_CDS: 4.83 Total: -21.76 kcal Atomic # 7 Polarization: -76.07 SS G_CDS: -1.75 Total: -77.82 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.05 Total: -26.79 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.91 kcal Total: -58.65 5.97 -52.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413355103.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.870 kcal (2) G-P(sol) polarization free energy of solvation -58.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds