Wall clock time and date at job start Tue Mar 31 2020 06:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47265 * 2 1 4 4 H 1.09003 * 109.46645 * 53.64253 * 3 2 1 5 5 C 1.53004 * 109.47390 * 293.64415 * 3 2 1 6 6 C 1.53000 * 109.47032 * 172.98527 * 5 3 2 7 7 C 1.52998 * 109.46755 * 174.75792 * 6 5 3 8 8 C 1.53004 * 109.46815 * 294.75170 * 6 5 3 9 9 C 1.50693 * 109.47148 * 173.63866 * 3 2 1 10 10 O 1.21287 * 119.99831 * 100.64510 * 9 3 2 11 11 N 1.34779 * 120.00279 * 280.64518 * 9 3 2 12 12 C 1.46490 * 119.99826 * 4.61429 * 11 9 3 13 13 C 1.50696 * 109.47594 * 94.26685 * 12 11 9 14 14 H 1.08006 * 119.99850 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00273 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99876 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 119.99881 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.46941 * 90.00039 * 17 15 13 19 19 H 1.48498 * 109.47139 * 210.00155 * 17 15 13 20 20 H 1.48494 * 109.47314 * 330.00476 * 17 15 13 21 21 C 1.46503 * 119.99892 * 184.60931 * 11 9 3 22 22 C 1.53000 * 109.47172 * 94.70235 * 21 11 9 23 23 C 1.52997 * 117.50097 * 245.64095 * 22 21 11 24 24 C 1.52991 * 117.49980 * 176.97960 * 22 21 11 25 25 H 1.09008 * 109.46877 * 296.30823 * 1 2 3 26 26 H 1.09002 * 109.47189 * 176.30993 * 1 2 3 27 27 H 1.08997 * 109.46936 * 56.30568 * 1 2 3 28 28 H 1.08997 * 109.46778 * 120.00612 * 2 1 3 29 29 H 1.09000 * 109.46274 * 240.00067 * 2 1 3 30 30 H 1.08999 * 109.46897 * 292.98216 * 5 3 2 31 31 H 1.08998 * 109.46961 * 52.97990 * 5 3 2 32 32 H 1.08994 * 109.47345 * 54.75645 * 6 5 3 33 33 H 1.09006 * 109.47330 * 60.00221 * 7 6 5 34 34 H 1.09000 * 109.47215 * 179.97438 * 7 6 5 35 35 H 1.08998 * 109.47096 * 299.99749 * 7 6 5 36 36 H 1.08992 * 109.47611 * 305.56698 * 8 6 5 37 37 H 1.09004 * 109.46470 * 65.56690 * 8 6 5 38 38 H 1.09005 * 109.46837 * 185.55871 * 8 6 5 39 39 H 1.09008 * 109.46788 * 214.26642 * 12 11 9 40 40 H 1.08998 * 109.47437 * 334.26022 * 12 11 9 41 41 H 0.96996 * 119.99749 * 179.97438 * 16 15 13 42 42 H 1.08994 * 109.47159 * 214.70074 * 21 11 9 43 43 H 1.08998 * 109.47355 * 334.70432 * 21 11 9 44 44 H 1.09001 * 115.54845 * 31.30908 * 22 21 11 45 45 H 1.09002 * 117.49877 * 359.97438 * 23 22 21 46 46 H 1.08997 * 117.50306 * 145.01755 * 23 22 21 47 47 H 1.09007 * 117.50157 * 214.97979 * 24 22 21 48 48 H 1.09000 * 117.50253 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5868 1.9880 0.8277 5 6 1.6647 2.1162 -1.3214 6 6 2.0179 3.6034 -1.2540 7 6 1.7646 4.2499 -2.6173 8 6 1.1486 4.2864 -0.1962 9 6 3.5388 1.4453 0.1574 10 8 4.2501 1.6023 -0.8124 11 7 4.0888 1.2735 1.3758 12 6 3.2352 0.9834 2.5304 13 6 3.1564 -0.5076 2.7349 14 1 3.6893 -1.1726 2.0714 15 6 2.4048 -1.0228 3.7698 16 7 2.3365 -2.3239 3.9485 17 14 1.4849 0.1275 4.9187 18 1 0.1225 0.3767 4.3831 19 1 1.3821 -0.4941 6.2634 20 1 2.2187 1.4142 5.0229 21 6 5.5403 1.3769 1.5454 22 6 5.9033 2.7990 1.9774 23 6 6.7272 3.6444 1.0041 24 6 7.3747 3.0925 2.2766 25 1 -0.3633 0.4555 0.9213 26 1 -0.3634 -1.0255 -0.0661 27 1 -0.3633 0.5701 -0.8550 28 1 1.8933 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 2.2160 1.6485 -2.1372 31 1 0.5945 2.0043 -1.4951 32 1 3.0690 3.7155 -0.9883 33 1 0.7134 4.1378 -2.8830 34 1 2.0157 5.3095 -2.5692 35 1 2.3837 3.7633 -3.3709 36 1 0.0976 4.0905 -0.4078 37 1 1.4002 3.8942 0.7892 38 1 1.3292 5.3612 -0.2164 39 1 3.6570 1.4504 3.4205 40 1 2.2354 1.3790 2.3517 41 1 1.8081 -2.6863 4.6767 42 1 5.8682 0.6706 2.3081 43 1 6.0338 1.1469 0.6011 44 1 5.1549 3.3125 2.5810 45 1 7.0110 3.1873 0.0562 46 1 6.5211 4.7141 0.9676 47 1 7.5944 3.7994 3.0768 48 1 8.0843 2.2726 2.1653 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413355105.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:42 Heat of formation + Delta-G solvation = -42.680745 kcal Electronic energy + Delta-G solvation = -24138.502388 eV Core-core repulsion = 21000.243408 eV Total energy + Delta-G solvation = -3138.258980 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.73059 -37.35254 -36.09351 -34.88221 -33.50652 -32.46309 -28.75325 -28.31436 -26.99464 -26.56366 -24.26243 -22.52486 -22.11271 -21.22090 -20.22768 -19.73568 -17.93713 -17.02075 -16.70722 -15.74882 -14.94287 -14.79957 -14.58291 -14.26550 -14.02926 -13.66849 -13.39476 -13.16020 -12.90385 -12.58213 -12.22096 -12.16027 -12.05102 -12.01394 -11.60857 -11.43662 -11.36201 -11.29686 -11.21130 -10.92221 -10.78234 -10.71469 -10.54559 -10.39630 -10.23062 -10.13807 -10.00353 -9.80049 -9.61151 -9.54502 -8.85078 -8.69619 -7.70982 -6.23659 -4.23262 3.15619 3.23935 3.25634 3.42799 3.79666 4.14579 4.24949 4.99745 5.03407 5.06630 5.13709 5.16647 5.19753 5.26436 5.36520 5.61930 5.65141 5.71905 5.74059 5.79904 5.81429 5.87658 5.95662 5.99755 6.05938 6.08383 6.09788 6.16554 6.17318 6.24842 6.28110 6.32751 6.40147 6.46412 6.46705 6.56718 6.61029 6.65998 6.68411 6.72903 6.85640 7.23142 7.38831 7.46000 8.16272 8.44011 8.81291 9.01419 9.36099 10.88494 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.011172 B = 0.008028 C = 0.005570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.578105 B = 3486.805452 C = 5026.136012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C -0.101 4.101 4 H 0.089 0.911 5 C -0.097 4.097 6 C -0.100 4.100 7 C -0.141 4.141 8 C -0.148 4.148 9 C 0.526 3.474 10 O -0.567 6.567 11 N -0.589 5.589 12 C 0.206 3.794 13 C -0.535 4.535 14 H 0.080 0.920 15 C 0.079 3.921 16 N -0.888 5.888 17 Si 0.866 3.134 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.264 1.264 21 C 0.148 3.852 22 C -0.161 4.161 23 C -0.176 4.176 24 C -0.179 4.179 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.046 0.954 28 H 0.117 0.883 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.048 0.952 39 H 0.030 0.970 40 H 0.033 0.967 41 H 0.266 0.734 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.101 0.899 45 H 0.095 0.905 46 H 0.086 0.914 47 H 0.090 0.910 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.276 11.181 -5.674 12.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.172 4.172 3 C -0.122 4.122 4 H 0.107 0.893 5 C -0.135 4.135 6 C -0.118 4.118 7 C -0.198 4.198 8 C -0.205 4.205 9 C 0.315 3.685 10 O -0.447 6.447 11 N -0.319 5.319 12 C 0.085 3.915 13 C -0.574 4.574 14 H 0.098 0.902 15 C -0.125 4.125 16 N -0.525 5.525 17 Si 0.692 3.308 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.189 1.189 21 C 0.024 3.976 22 C -0.180 4.180 23 C -0.213 4.213 24 C -0.217 4.217 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.135 0.865 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.048 0.952 40 H 0.050 0.950 41 H 0.076 0.924 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.119 0.881 45 H 0.113 0.887 46 H 0.104 0.896 47 H 0.108 0.892 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.007 11.100 -6.033 12.634 hybrid contribution -0.596 0.466 0.948 1.213 sum -0.589 11.566 -5.085 12.648 Atomic orbital electron populations 1.21743 0.96219 1.01212 1.00897 1.21808 0.95589 0.94412 1.05407 1.21342 0.92643 0.98975 0.99206 0.89307 1.21574 1.00681 0.94238 0.97024 1.21142 1.00632 0.95071 0.94974 1.21780 1.01051 0.99867 0.97151 1.21905 0.99676 0.99750 0.99211 1.20496 0.90525 0.75096 0.82395 1.90565 1.63761 1.51826 1.38595 1.47839 1.06630 1.68390 1.09005 1.19842 0.90066 0.97486 0.84114 1.21308 1.31297 0.89940 1.14817 0.90201 1.24846 0.95940 0.94840 0.96870 1.69886 1.40216 1.11094 1.31331 0.86998 0.81007 0.81685 0.81061 1.19728 1.20913 1.18884 1.20843 0.81796 0.93231 1.01709 1.22782 0.93915 0.98291 1.03010 1.22974 1.04689 0.99230 0.94440 1.22906 0.95825 1.03457 0.99519 0.92983 0.92906 0.93494 0.86467 0.92741 0.91148 0.91629 0.90668 0.93169 0.93322 0.92778 0.92892 0.92645 0.93283 0.95203 0.94954 0.92356 0.89996 0.90401 0.88067 0.88701 0.89575 0.89194 0.88831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.78 37.16 0.36 -1.91 16 2 C -0.13 -2.49 5.25 -26.73 -0.14 -2.63 16 3 C -0.10 -1.78 1.24 -91.77 -0.11 -1.89 16 4 H 0.09 1.55 4.75 -51.93 -0.25 1.30 16 5 C -0.10 -1.50 3.73 -26.73 -0.10 -1.60 16 6 C -0.10 -1.43 2.77 -90.62 -0.25 -1.68 16 7 C -0.14 -1.72 9.19 37.16 0.34 -1.38 16 8 C -0.15 -1.91 8.82 37.16 0.33 -1.58 16 9 C 0.53 10.58 6.14 -10.99 -0.07 10.51 16 10 O -0.57 -12.35 14.57 5.55 0.08 -12.27 16 11 N -0.59 -11.93 2.46 -175.07 -0.43 -12.36 16 12 C 0.21 4.46 3.84 -5.20 -0.02 4.44 16 13 C -0.54 -13.58 7.45 -34.44 -0.26 -13.83 16 14 H 0.08 2.28 8.06 -52.48 -0.42 1.86 16 15 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 16 N -0.89 -25.11 13.96 55.43 0.77 -24.33 16 17 Si 0.87 19.44 27.47 -169.99 -4.67 14.77 16 18 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 20 H -0.26 -5.66 6.54 56.52 0.37 -5.29 16 21 C 0.15 2.72 5.79 -4.04 -0.02 2.70 16 22 C -0.16 -2.54 6.01 -90.63 -0.54 -3.08 16 23 C -0.18 -2.48 10.18 -26.70 -0.27 -2.75 16 24 C -0.18 -2.35 10.25 -26.70 -0.27 -2.62 16 25 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.64 6.32 -51.93 -0.33 0.31 16 28 H 0.12 2.59 4.88 -51.93 -0.25 2.33 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 1.18 7.64 -51.93 -0.40 0.78 16 31 H 0.07 0.90 6.26 -51.93 -0.32 0.58 16 32 H 0.07 1.26 6.75 -51.93 -0.35 0.91 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.77 6.70 -51.93 -0.35 0.42 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.03 0.65 7.16 -51.92 -0.37 0.28 16 40 H 0.03 0.68 5.19 -51.93 -0.27 0.41 16 41 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.08 1.54 8.11 -51.93 -0.42 1.12 16 43 H 0.08 1.47 6.97 -51.93 -0.36 1.11 16 44 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 45 H 0.09 1.39 8.04 -51.93 -0.42 0.98 16 46 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.09 1.05 8.14 -51.92 -0.42 0.63 16 48 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 367.96 15.07 5.55 5.55 Total: -1.00 -27.66 367.96 -8.58 -36.24 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -8.75 Total: 7.75 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: -1.13 Total: -15.34 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.34 Total: -36.70 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.08 Total: -12.27 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -4.67 Total: 14.77 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -27.66 -8.58 -36.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413355105.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.439 kcal (2) G-P(sol) polarization free energy of solvation -27.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds