Wall clock time and date at job start Tue Mar 31 2020 05:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47471 * 2 1 4 4 C 1.53001 * 109.47488 * 185.20483 * 3 2 1 5 5 H 1.08995 * 109.47262 * 178.58522 * 4 3 2 6 6 C 1.52997 * 109.46663 * 298.58643 * 4 3 2 7 7 C 1.52998 * 109.47257 * 294.30170 * 6 4 3 8 8 C 1.53000 * 109.46988 * 174.76995 * 7 6 4 9 9 C 1.53004 * 109.47046 * 180.02562 * 8 7 6 10 10 C 1.53006 * 109.46684 * 299.99814 * 9 8 7 11 11 C 1.53000 * 109.47227 * 60.00297 * 10 9 8 12 12 C 1.52997 * 109.47472 * 294.77255 * 7 6 4 13 13 C 1.50699 * 109.46772 * 58.58443 * 4 3 2 14 14 O 1.21286 * 120.00007 * 239.99573 * 13 4 3 15 15 N 1.34779 * 120.00042 * 60.00702 * 13 4 3 16 16 C 1.46503 * 119.99871 * 179.97438 * 15 13 4 17 17 C 1.50696 * 109.47014 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99964 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99680 * 179.97438 * 17 16 15 20 20 N 1.31508 * 120.00231 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99753 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47126 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47254 * 119.99859 * 21 19 17 24 24 H 1.48495 * 109.47089 * 240.00308 * 21 19 17 25 25 H 1.09011 * 109.47249 * 300.00199 * 1 2 3 26 26 H 1.08994 * 109.47462 * 59.99896 * 1 2 3 27 27 H 1.09003 * 109.47448 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47386 * 239.99523 * 2 1 3 29 29 H 1.09004 * 109.47179 * 119.99610 * 2 1 3 30 30 H 1.09003 * 109.47397 * 65.19951 * 3 2 1 31 31 H 1.09005 * 109.46722 * 305.20416 * 3 2 1 32 32 H 1.09003 * 109.46734 * 174.30436 * 6 4 3 33 33 H 1.08998 * 109.47275 * 54.30982 * 6 4 3 34 34 H 1.09003 * 109.47017 * 54.77234 * 7 6 4 35 35 H 1.09001 * 109.47555 * 60.00173 * 8 7 6 36 36 H 1.09004 * 109.47239 * 299.99789 * 8 7 6 37 37 H 1.09001 * 109.47224 * 59.99454 * 9 8 7 38 38 H 1.08996 * 109.47117 * 180.02562 * 9 8 7 39 39 H 1.09000 * 109.46645 * 179.97438 * 10 9 8 40 40 H 1.08991 * 109.47001 * 299.99914 * 10 9 8 41 41 H 1.08995 * 109.47237 * 179.97438 * 11 10 9 42 42 H 1.09001 * 109.47111 * 59.99193 * 11 10 9 43 43 H 1.09003 * 109.46982 * 300.00000 * 12 7 6 44 44 H 1.09005 * 109.47329 * 59.99656 * 12 7 6 45 45 H 0.96993 * 119.99992 * 359.97438 * 15 13 4 46 46 H 1.09000 * 109.46752 * 299.99938 * 16 15 13 47 47 H 1.09008 * 109.47107 * 59.99479 * 16 15 13 48 48 H 0.97003 * 119.99699 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5644 1.4444 -0.1309 5 1 3.9256 2.4725 -0.1561 6 6 4.1799 0.7169 1.0661 7 6 3.8974 1.5086 2.3445 8 6 4.3980 0.7181 3.5550 9 6 4.1150 1.5095 4.8335 10 6 4.8376 2.8567 4.7697 11 6 4.3369 3.6472 3.5592 12 6 4.6202 2.8555 2.2805 13 6 3.9601 0.7415 -1.4038 14 8 4.6652 -0.2443 -1.3581 15 7 3.5307 1.2084 -2.5929 16 6 3.9159 0.5254 -3.8304 17 6 3.3091 1.2416 -5.0093 18 1 2.6980 2.1181 -4.8525 19 6 3.5350 0.7783 -6.2882 20 7 4.2803 -0.2882 -6.4792 21 14 2.7834 1.6665 -7.7496 22 1 1.9947 2.8297 -7.2697 23 1 3.8646 2.1401 -8.6506 24 1 1.8938 0.7363 -8.4901 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.7548 1.9288 0.9329 31 1 1.6025 1.9825 -0.8398 32 1 5.2570 0.6294 0.9234 33 1 3.7426 -0.2780 1.1507 34 1 2.8244 1.6762 2.4385 35 1 5.4710 0.5505 3.4611 36 1 3.8830 -0.2415 3.6006 37 1 3.0420 1.6769 4.9272 38 1 4.4721 0.9466 5.6958 39 1 4.6356 3.4207 5.6803 40 1 5.9105 2.6894 4.6760 41 1 4.8513 4.6071 3.5141 42 1 3.2639 3.8144 3.6530 43 1 5.6932 2.6879 2.1865 44 1 4.2636 3.4187 1.4181 45 1 2.9667 1.9966 -2.6294 46 1 5.0020 0.5271 -3.9234 47 1 3.5551 -0.5030 -3.8053 48 1 4.4389 -0.6142 -7.3789 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427627998.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:15 Heat of formation + Delta-G solvation = -101.093580 kcal Electronic energy + Delta-G solvation = -23002.380850 eV Core-core repulsion = 19861.588900 eV Total energy + Delta-G solvation = -3140.791951 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.80448 -38.37903 -35.64933 -34.15879 -32.73452 -32.25331 -30.89721 -29.89947 -27.18360 -25.90720 -24.04022 -22.81411 -22.18589 -21.72130 -20.52578 -19.71613 -18.71534 -16.93194 -15.87758 -15.52315 -15.23765 -15.13106 -14.87885 -14.34359 -14.22813 -14.03343 -13.84109 -13.47980 -13.19484 -12.90099 -12.60306 -12.24864 -12.15013 -12.02114 -11.76023 -11.67856 -11.48344 -11.46438 -11.22352 -11.11111 -10.93471 -10.90021 -10.73150 -10.46369 -10.44014 -10.30641 -10.24330 -10.06404 -9.84751 -9.35194 -8.84315 -8.71375 -7.81329 -6.15082 -4.21589 3.23961 3.31081 3.34131 3.48084 4.12324 4.37632 4.59456 4.59974 4.69182 4.93321 5.01157 5.07203 5.17607 5.18573 5.21275 5.30906 5.36065 5.39762 5.42352 5.49208 5.53424 5.61664 5.72471 5.74418 5.79874 5.88836 5.90923 5.94700 5.98889 6.05364 6.06947 6.11130 6.16938 6.20244 6.23330 6.31680 6.41055 6.50629 6.50965 6.64131 7.35260 7.51109 7.55459 7.70331 7.99946 8.69707 8.82100 9.18558 9.45524 10.95190 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.024621 B = 0.003467 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.984232 B = 8073.846039 C = 8382.421198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.129 4.129 3 C -0.109 4.109 4 C -0.111 4.111 5 H 0.091 0.909 6 C -0.095 4.095 7 C -0.087 4.087 8 C -0.114 4.114 9 C -0.119 4.119 10 C -0.120 4.120 11 C -0.119 4.119 12 C -0.118 4.118 13 C 0.504 3.496 14 O -0.558 6.558 15 N -0.713 5.713 16 C 0.250 3.750 17 C -0.541 4.541 18 H 0.063 0.937 19 C 0.063 3.937 20 N -0.886 5.886 21 Si 0.902 3.098 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.064 0.936 45 H 0.389 0.611 46 H 0.025 0.975 47 H 0.025 0.975 48 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.925 6.514 20.862 22.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C -0.146 4.146 4 C -0.133 4.133 5 H 0.109 0.891 6 C -0.132 4.132 7 C -0.106 4.106 8 C -0.152 4.152 9 C -0.156 4.156 10 C -0.157 4.157 11 C -0.156 4.156 12 C -0.155 4.155 13 C 0.289 3.711 14 O -0.438 6.438 15 N -0.361 5.361 16 C 0.129 3.871 17 C -0.579 4.579 18 H 0.081 0.919 19 C -0.140 4.140 20 N -0.523 5.523 21 Si 0.730 3.270 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.221 0.779 46 H 0.043 0.957 47 H 0.043 0.957 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.338 5.675 20.703 21.725 hybrid contribution -0.592 0.803 -1.011 1.420 sum -3.931 6.478 19.693 21.100 Atomic orbital electron populations 1.21749 0.96071 1.01417 1.01421 1.21606 0.95534 0.96753 1.02722 1.21596 0.93220 0.97607 1.02217 1.21440 0.96950 1.00792 0.94082 0.89114 1.21438 1.01489 0.98781 0.91526 1.21227 1.00144 0.94816 0.94371 1.21574 1.01379 0.98278 0.93956 1.21529 1.00365 0.96049 0.97663 1.21537 1.00175 0.96150 0.97850 1.21539 1.00983 0.98225 0.94902 1.21672 1.00720 0.95854 0.97287 1.20440 0.80539 0.84928 0.85224 1.90644 1.38683 1.26947 1.87510 1.46462 1.51176 1.31265 1.07204 1.19067 0.96120 0.92931 0.78975 1.21272 1.32517 1.13160 0.90985 0.91925 1.24953 0.95035 0.95008 0.99052 1.69987 1.37376 1.22785 1.22170 0.86383 0.78959 0.79541 0.82160 1.19635 1.20823 1.20813 0.93198 0.92637 0.93001 0.91409 0.91827 0.91224 0.91561 0.91322 0.91083 0.90976 0.91991 0.92065 0.92190 0.92391 0.92513 0.92127 0.92335 0.92182 0.91970 0.91710 0.77876 0.95729 0.95703 0.92551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 37.15 0.37 -1.36 16 2 C -0.13 -1.73 5.31 -26.74 -0.14 -1.87 16 3 C -0.11 -1.33 4.69 -26.73 -0.13 -1.46 16 4 C -0.11 -1.58 2.38 -91.77 -0.22 -1.80 16 5 H 0.09 1.16 6.33 -51.93 -0.33 0.83 16 6 C -0.09 -1.25 3.33 -26.73 -0.09 -1.34 16 7 C -0.09 -0.89 2.06 -90.62 -0.19 -1.08 16 8 C -0.11 -1.09 5.20 -26.73 -0.14 -1.23 16 9 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 10 C -0.12 -0.96 5.92 -26.73 -0.16 -1.11 16 11 C -0.12 -1.00 5.92 -26.71 -0.16 -1.15 16 12 C -0.12 -1.15 4.97 -26.71 -0.13 -1.28 16 13 C 0.50 10.03 5.74 -10.98 -0.06 9.97 16 14 O -0.56 -13.47 15.91 5.55 0.09 -13.38 16 15 N -0.71 -15.13 5.45 -61.47 -0.33 -15.47 16 16 C 0.25 6.70 5.43 -5.19 -0.03 6.67 16 17 C -0.54 -14.79 9.28 -34.44 -0.32 -15.11 16 18 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.89 -26.30 13.29 55.43 0.74 -25.57 16 21 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 25 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 1.15 6.99 -51.93 -0.36 0.79 16 29 H 0.06 0.81 6.62 -51.93 -0.34 0.47 16 30 H 0.07 0.71 6.42 -51.93 -0.33 0.38 16 31 H 0.07 0.81 7.61 -51.93 -0.39 0.42 16 32 H 0.07 1.03 7.93 -51.93 -0.41 0.62 16 33 H 0.07 1.01 6.30 -51.93 -0.33 0.68 16 34 H 0.07 0.71 6.34 -51.93 -0.33 0.38 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.63 6.46 -51.93 -0.34 0.30 16 45 H 0.39 7.18 7.76 -40.82 -0.32 6.86 16 46 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.02 0.74 8.14 -51.92 -0.42 0.32 16 48 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 365.66 15.07 5.51 5.51 Total: -1.00 -31.06 365.66 -9.60 -40.66 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -8.94 Total: 3.91 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -1.65 Total: -11.62 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.40 Total: -41.03 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.09 Total: -13.38 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.06 -9.60 -40.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427627998.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.432 kcal (2) G-P(sol) polarization free energy of solvation -31.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds