Wall clock time and date at job start Tue Mar 31 2020 05:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47493 * 2 1 4 4 C 1.53005 * 109.46824 * 120.00025 * 2 1 3 5 5 H 1.08991 * 109.47188 * 54.15850 * 4 2 1 6 6 C 1.53000 * 109.46796 * 294.15706 * 4 2 1 7 7 C 1.53010 * 109.46934 * 174.89435 * 6 4 2 8 8 C 1.52996 * 109.47039 * 174.21296 * 7 6 4 9 9 C 1.53001 * 109.47179 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.46846 * 299.99962 * 9 8 7 11 11 C 1.53000 * 109.46892 * 60.00232 * 10 9 8 12 12 C 1.52996 * 109.47300 * 294.21721 * 7 6 4 13 13 C 1.50700 * 109.47184 * 174.16053 * 4 2 1 14 14 O 1.21288 * 120.00033 * 101.27431 * 13 4 2 15 15 N 1.34768 * 120.00086 * 281.27903 * 13 4 2 16 16 C 1.46504 * 120.00250 * 183.55176 * 15 13 4 17 17 C 1.50700 * 109.47124 * 179.97438 * 16 15 13 18 18 H 1.07996 * 120.00410 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99846 * 179.97438 * 17 16 15 20 20 N 1.31525 * 120.00246 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00152 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47110 * 90.00162 * 21 19 17 23 23 H 1.48500 * 109.47269 * 210.00226 * 21 19 17 24 24 H 1.48500 * 109.47243 * 330.00267 * 21 19 17 25 25 H 1.09001 * 109.47122 * 305.71440 * 1 2 3 26 26 H 1.09005 * 109.46961 * 65.71071 * 1 2 3 27 27 H 1.08997 * 109.47272 * 185.70866 * 1 2 3 28 28 H 1.08996 * 109.47614 * 239.99582 * 2 1 3 29 29 H 1.08999 * 109.47529 * 182.44540 * 3 2 1 30 30 H 1.08997 * 109.47287 * 302.45305 * 3 2 1 31 31 H 1.09004 * 109.46957 * 62.44693 * 3 2 1 32 32 H 1.09002 * 109.47118 * 54.90341 * 6 4 2 33 33 H 1.08991 * 109.47656 * 294.89642 * 6 4 2 34 34 H 1.09003 * 109.46686 * 54.21859 * 7 6 4 35 35 H 1.09007 * 109.47061 * 60.00234 * 8 7 6 36 36 H 1.09002 * 109.47409 * 300.00530 * 8 7 6 37 37 H 1.09000 * 109.47168 * 180.02562 * 9 8 7 38 38 H 1.08994 * 109.47196 * 60.00195 * 9 8 7 39 39 H 1.08998 * 109.46912 * 179.97438 * 10 9 8 40 40 H 1.08994 * 109.47413 * 300.00100 * 10 9 8 41 41 H 1.08993 * 109.47706 * 59.99621 * 11 10 9 42 42 H 1.09002 * 109.47100 * 179.97438 * 11 10 9 43 43 H 1.09007 * 109.46908 * 299.99832 * 12 7 6 44 44 H 1.09000 * 109.47143 * 59.99993 * 12 7 6 45 45 H 0.97003 * 120.00026 * 3.54802 * 15 13 4 46 46 H 1.08999 * 109.47187 * 299.99985 * 16 15 13 47 47 H 1.09002 * 109.46939 * 60.00244 * 16 15 13 48 48 H 0.96996 * 120.00330 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.5937 -1.7142 1.3031 6 6 1.6533 0.0798 2.4942 7 6 2.0502 -0.7026 3.7477 8 6 1.7966 0.1576 4.9873 9 6 2.1941 -0.6245 6.2408 10 6 1.3606 -1.9045 6.3290 11 6 1.6143 -2.7647 5.0894 12 6 1.2164 -1.9823 3.8356 13 6 3.5400 -0.8478 1.1792 14 8 4.2427 -0.0903 1.8144 15 7 4.1006 -1.8024 0.4107 16 6 5.5553 -1.9759 0.4028 17 6 5.9219 -3.1009 -0.5306 18 1 5.1488 -3.6331 -1.0647 19 6 7.2445 -3.4500 -0.7034 20 7 8.1861 -2.8015 -0.0533 21 14 7.6990 -4.8439 -1.8608 22 1 7.9220 -4.3017 -3.2252 23 1 8.9409 -5.5012 -1.3804 24 1 6.5956 -5.8370 -1.8971 25 1 -0.3633 0.5999 0.8344 26 1 -0.3633 0.4227 -0.9367 27 1 -0.3633 -1.0225 0.1022 28 1 1.8934 -0.5139 -0.8899 29 1 3.1292 1.4428 -0.0438 30 1 1.6413 1.9689 -0.8671 31 1 1.7130 1.9435 0.9111 32 1 0.5765 0.2490 2.4974 33 1 2.1717 1.0385 2.4849 34 1 3.1079 -0.9609 3.6950 35 1 0.7389 0.4160 5.0401 36 1 2.3907 1.0693 4.9247 37 1 2.0130 -0.0119 7.1240 38 1 3.2518 -0.8825 6.1879 39 1 1.6441 -2.4619 7.2218 40 1 0.3030 -1.6465 6.3819 41 1 2.6719 -3.0227 5.0363 42 1 1.0209 -3.6768 5.1524 43 1 0.1587 -1.7239 3.8884 44 1 1.3971 -2.5951 2.9525 45 1 3.5409 -2.3748 -0.1371 46 1 6.0293 -1.0542 0.0653 47 1 5.8984 -2.2134 1.4098 48 1 9.1166 -3.0468 -0.1751 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427634657.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:19 Heat of formation + Delta-G solvation = -97.766317 kcal Electronic energy + Delta-G solvation = -23460.856876 eV Core-core repulsion = 20320.209207 eV Total energy + Delta-G solvation = -3140.647670 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.90171 -38.09499 -36.04343 -34.12506 -32.39117 -32.18732 -30.67611 -28.60911 -27.08920 -27.04524 -24.67446 -22.60575 -22.37455 -21.15990 -20.34085 -19.58747 -18.71195 -16.87625 -15.82136 -15.73132 -15.17704 -14.73676 -14.62381 -14.28305 -14.04133 -13.95748 -13.73572 -13.36993 -13.09783 -12.82989 -12.42952 -12.13464 -12.05501 -12.00631 -11.82397 -11.75637 -11.64549 -11.17985 -11.03479 -10.99119 -10.94728 -10.88025 -10.67598 -10.55190 -10.44097 -10.28942 -10.17684 -9.82097 -9.71599 -9.36871 -8.80048 -8.70251 -7.80226 -6.14826 -4.21425 3.24824 3.31017 3.33378 3.47678 4.16708 4.40522 4.67753 4.79205 4.83622 4.97781 5.00773 5.13312 5.21323 5.26883 5.30274 5.45863 5.52244 5.57010 5.61155 5.62004 5.65552 5.73044 5.75551 5.78871 5.85275 5.95816 5.99179 6.03228 6.07382 6.08722 6.19711 6.22275 6.27074 6.33453 6.35488 6.39117 6.44264 6.52063 6.64396 6.75271 7.35309 7.51919 7.55691 7.70681 8.00284 8.70339 8.82683 9.19747 9.45786 10.95392 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.014663 B = 0.004662 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.071172 B = 6004.247221 C = 7066.089545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 C -0.150 4.150 4 C -0.107 4.107 5 H 0.087 0.913 6 C -0.094 4.094 7 C -0.091 4.091 8 C -0.109 4.109 9 C -0.121 4.121 10 C -0.117 4.117 11 C -0.121 4.121 12 C -0.114 4.114 13 C 0.506 3.494 14 O -0.553 6.553 15 N -0.715 5.715 16 C 0.251 3.749 17 C -0.542 4.542 18 H 0.062 0.938 19 C 0.064 3.936 20 N -0.886 5.886 21 Si 0.902 3.098 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.273 1.273 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.388 0.612 46 H 0.025 0.975 47 H 0.024 0.976 48 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.559 3.786 6.459 19.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.104 4.104 3 C -0.207 4.207 4 C -0.128 4.128 5 H 0.105 0.895 6 C -0.132 4.132 7 C -0.110 4.110 8 C -0.147 4.147 9 C -0.158 4.158 10 C -0.154 4.154 11 C -0.159 4.159 12 C -0.152 4.152 13 C 0.291 3.709 14 O -0.432 6.432 15 N -0.363 5.363 16 C 0.130 3.870 17 C -0.580 4.580 18 H 0.080 0.920 19 C -0.140 4.140 20 N -0.524 5.524 21 Si 0.729 3.271 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.198 1.198 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.220 0.780 46 H 0.043 0.957 47 H 0.042 0.958 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.808 4.316 6.951 18.694 hybrid contribution 0.189 -1.137 -0.942 1.489 sum -16.619 3.179 6.009 17.956 Atomic orbital electron populations 1.21871 0.94971 1.01706 1.01625 1.21025 0.95649 0.96877 0.96897 1.21907 1.02001 0.95420 1.01368 1.21512 0.93875 1.00811 0.96610 0.89521 1.21518 1.00174 0.99413 0.92074 1.21223 1.01242 0.94587 0.93921 1.21514 1.00661 0.98296 0.94180 1.21537 1.00276 0.96364 0.97634 1.21513 0.99774 0.96413 0.97717 1.21544 1.01738 0.97824 0.94762 1.21644 0.99284 0.96626 0.97602 1.20394 0.89692 0.81021 0.79829 1.90632 1.64091 1.43177 1.45315 1.46490 1.10983 1.34476 1.44342 1.19052 0.73837 0.96774 0.97338 1.21237 0.92724 1.17393 1.26639 0.92000 1.24946 0.96179 0.96847 0.96010 1.69979 1.00543 1.40552 1.41283 0.86442 0.78078 0.81808 0.80749 1.20477 1.21016 1.19760 0.92429 0.92774 0.92685 0.90854 0.92048 0.93119 0.92203 0.91880 0.90545 0.90017 0.92586 0.92043 0.92517 0.91873 0.92530 0.92398 0.91853 0.92446 0.92443 0.92018 0.77955 0.95701 0.95773 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 8.83 37.16 0.33 -1.09 16 2 C -0.09 -1.08 2.68 -90.62 -0.24 -1.32 16 3 C -0.15 -1.99 8.55 37.16 0.32 -1.67 16 4 C -0.11 -1.51 1.84 -91.77 -0.17 -1.68 16 5 H 0.09 1.12 6.37 -51.93 -0.33 0.79 16 6 C -0.09 -1.24 2.99 -26.73 -0.08 -1.32 16 7 C -0.09 -1.24 2.02 -90.62 -0.18 -1.43 16 8 C -0.11 -1.31 5.20 -26.73 -0.14 -1.45 16 9 C -0.12 -1.37 5.92 -26.73 -0.16 -1.53 16 10 C -0.12 -1.22 5.92 -26.73 -0.16 -1.38 16 11 C -0.12 -1.40 5.92 -26.71 -0.16 -1.56 16 12 C -0.11 -1.36 4.98 -26.71 -0.13 -1.50 16 13 C 0.51 9.89 5.39 -10.99 -0.06 9.83 16 14 O -0.55 -12.88 14.81 5.55 0.08 -12.80 16 15 N -0.72 -15.12 5.55 -61.47 -0.34 -15.46 16 16 C 0.25 6.69 5.43 -5.19 -0.03 6.66 16 17 C -0.54 -14.79 9.28 -34.44 -0.32 -15.11 16 18 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 19 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 20 N -0.89 -26.28 13.29 55.43 0.74 -25.55 16 21 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 H 0.06 0.53 6.76 -51.93 -0.35 0.18 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.06 1.00 7.38 -51.93 -0.38 0.62 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.75 6.31 -51.93 -0.33 0.42 16 32 H 0.06 0.70 6.50 -51.93 -0.34 0.36 16 33 H 0.08 1.13 6.17 -51.93 -0.32 0.81 16 34 H 0.08 1.43 6.55 -51.93 -0.34 1.09 16 35 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 44 H 0.06 0.77 6.49 -51.93 -0.34 0.43 16 45 H 0.39 7.18 8.32 -40.82 -0.34 6.84 16 46 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 363.80 15.07 5.48 5.48 Total: -1.00 -30.58 363.80 -9.28 -39.86 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -8.94 Total: 5.37 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: -1.28 Total: -12.87 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: 0.40 Total: -41.01 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.08 Total: -12.80 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.58 -9.28 -39.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427634657.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.903 kcal (2) G-P(sol) polarization free energy of solvation -30.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds