Wall clock time and date at job start Tue Mar 31 2020 05:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47213 * 2 1 4 4 C 1.53002 * 109.46719 * 120.00106 * 2 1 3 5 5 H 1.08995 * 109.46923 * 186.40978 * 4 2 1 6 6 C 1.53003 * 109.47290 * 306.41084 * 4 2 1 7 7 C 1.52994 * 109.46957 * 185.78795 * 6 4 2 8 8 C 1.53009 * 109.47015 * 185.79974 * 7 6 4 9 9 C 1.52998 * 109.47172 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.46886 * 60.00159 * 9 8 7 11 11 C 1.53000 * 109.47152 * 300.00039 * 10 9 8 12 12 C 1.52989 * 109.47227 * 60.00005 * 11 10 9 13 13 C 1.50703 * 109.47305 * 66.41007 * 4 2 1 14 14 O 1.21285 * 119.99773 * 253.37420 * 13 4 2 15 15 N 1.34773 * 120.00303 * 73.36513 * 13 4 2 16 16 C 1.46495 * 120.00473 * 184.51036 * 15 13 4 17 17 C 1.50705 * 109.47273 * 180.02562 * 16 15 13 18 18 H 1.07992 * 119.99669 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99578 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99801 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00468 * 0.02562 * 19 17 16 22 22 H 1.48493 * 109.47060 * 89.99724 * 21 19 17 23 23 H 1.48490 * 109.47171 * 209.99871 * 21 19 17 24 24 H 1.48499 * 109.46576 * 329.99728 * 21 19 17 25 25 H 1.08998 * 109.47123 * 305.45677 * 1 2 3 26 26 H 1.09006 * 109.46645 * 65.45658 * 1 2 3 27 27 H 1.09003 * 109.47416 * 185.45342 * 1 2 3 28 28 H 1.08997 * 109.46885 * 239.99715 * 2 1 3 29 29 H 1.09000 * 109.47293 * 181.83861 * 3 2 1 30 30 H 1.08994 * 109.47627 * 301.84594 * 3 2 1 31 31 H 1.09005 * 109.47201 * 61.84711 * 3 2 1 32 32 H 1.08996 * 109.47030 * 65.78238 * 6 4 2 33 33 H 1.09003 * 109.46349 * 305.78257 * 6 4 2 34 34 H 1.08997 * 109.47042 * 305.79362 * 7 6 4 35 35 H 1.09007 * 109.46564 * 59.99667 * 8 7 6 36 36 H 1.08993 * 109.46875 * 300.00079 * 8 7 6 37 37 H 1.08996 * 109.46751 * 180.02562 * 9 8 7 38 38 H 1.09000 * 109.47524 * 300.00441 * 9 8 7 39 39 H 1.09003 * 109.47290 * 59.99944 * 10 9 8 40 40 H 1.08999 * 109.47147 * 179.97438 * 10 9 8 41 41 H 1.09006 * 109.46781 * 299.99362 * 11 10 9 42 42 H 1.08997 * 109.46720 * 180.02562 * 11 10 9 43 43 H 1.09008 * 109.47311 * 180.02562 * 12 11 10 44 44 H 1.08993 * 109.47567 * 60.00152 * 12 11 10 45 45 H 0.97003 * 119.99441 * 4.51407 * 15 13 4 46 46 H 1.09009 * 109.46999 * 300.00121 * 16 15 13 47 47 H 1.08996 * 109.47168 * 60.00192 * 16 15 13 48 48 H 0.97000 * 120.00167 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 3.1238 -0.6230 1.3085 6 6 1.4026 -0.0991 2.4933 7 6 2.0193 -0.7214 3.7476 8 6 1.2836 -0.2068 4.9866 9 6 1.8998 -0.8296 6.2410 10 6 3.3778 -0.4438 6.3285 11 6 4.1134 -0.9582 5.0895 12 6 3.4972 -0.3355 3.8353 13 6 1.6713 -2.1805 1.1725 14 8 0.7855 -2.6199 1.8749 15 7 2.3257 -2.9972 0.3233 16 6 1.9028 -4.3920 0.1762 17 6 2.7917 -5.0835 -0.8253 18 1 3.5912 -4.5383 -1.3045 19 6 2.5839 -6.4122 -1.1295 20 7 3.3592 -7.0155 -2.0039 21 14 1.2004 -7.3550 -0.3010 22 1 -0.0373 -7.2325 -1.1124 23 1 1.5769 -8.7867 -0.1855 24 1 0.9618 -6.7951 1.0535 25 1 -0.3633 0.5961 0.8371 26 1 -0.3633 0.4269 -0.9349 27 1 -0.3634 -1.0230 0.0977 28 1 1.8933 -0.5139 -0.8899 29 1 3.1295 1.4426 -0.0330 30 1 1.6500 1.9658 -0.8729 31 1 1.7040 1.9467 0.9061 32 1 0.3291 -0.2874 2.4844 33 1 1.5831 0.9759 2.4948 34 1 1.9297 -1.8064 3.6965 35 1 0.2307 -0.4821 4.9244 36 1 1.3731 0.8782 5.0378 37 1 1.3754 -0.4634 7.1235 38 1 1.8100 -1.9147 6.1896 39 1 3.4676 0.6413 6.3799 40 1 3.8167 -0.8871 7.2223 41 1 4.0237 -2.0434 5.0382 42 1 5.1664 -0.6837 5.1522 43 1 4.0210 -0.7024 2.9525 44 1 3.5870 0.7495 3.8866 45 1 3.0767 -2.6613 -0.1906 46 1 1.9783 -4.8980 1.1388 47 1 0.8701 -4.4240 -0.1711 48 1 3.2129 -7.9502 -2.2182 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427634658.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:21 Heat of formation + Delta-G solvation = -94.229646 kcal Electronic energy + Delta-G solvation = -23505.163446 eV Core-core repulsion = 20364.669138 eV Total energy + Delta-G solvation = -3140.494308 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.01797 -38.19380 -36.14006 -34.26967 -32.44139 -32.23154 -30.73865 -28.87697 -27.51637 -27.12744 -24.73019 -22.57454 -22.11704 -21.19954 -20.42732 -19.65566 -18.86519 -17.05626 -16.03239 -15.87153 -15.27408 -14.81661 -14.63290 -14.36689 -14.09301 -13.95798 -13.76598 -13.49585 -13.13308 -12.93916 -12.56178 -12.37714 -12.16477 -12.10985 -11.97696 -11.92328 -11.81332 -11.23246 -11.09270 -11.04370 -10.97549 -10.79740 -10.72774 -10.61761 -10.49500 -10.23095 -9.96670 -9.88019 -9.77687 -9.47560 -8.97168 -8.76063 -8.07585 -6.20533 -4.22327 3.26041 3.31942 3.33631 3.42363 4.07368 4.34226 4.62020 4.73500 4.77675 4.91986 4.95513 5.05580 5.15071 5.21648 5.24042 5.40144 5.47071 5.49823 5.54315 5.56220 5.59474 5.69401 5.69911 5.73948 5.78056 5.89349 5.93716 5.98483 6.02007 6.03247 6.15076 6.16257 6.20727 6.29070 6.29769 6.33215 6.38409 6.46263 6.57064 6.69096 6.85009 7.10036 7.28600 7.43562 8.17214 8.57154 8.77597 9.01664 9.40321 10.91535 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.014844 B = 0.004892 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.776177 B = 5722.544746 C = 6713.688744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.087 4.087 3 C -0.145 4.145 4 C -0.106 4.106 5 H 0.089 0.911 6 C -0.094 4.094 7 C -0.092 4.092 8 C -0.109 4.109 9 C -0.120 4.120 10 C -0.117 4.117 11 C -0.121 4.121 12 C -0.115 4.115 13 C 0.507 3.493 14 O -0.555 6.555 15 N -0.708 5.708 16 C 0.221 3.779 17 C -0.542 4.542 18 H 0.079 0.921 19 C 0.078 3.922 20 N -0.893 5.893 21 Si 0.876 3.124 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.261 1.261 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.395 0.605 46 H 0.024 0.976 47 H 0.018 0.982 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.176 17.776 10.899 20.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.105 4.105 3 C -0.203 4.203 4 C -0.128 4.128 5 H 0.107 0.893 6 C -0.131 4.131 7 C -0.110 4.110 8 C -0.146 4.146 9 C -0.158 4.158 10 C -0.154 4.154 11 C -0.158 4.158 12 C -0.152 4.152 13 C 0.293 3.707 14 O -0.434 6.434 15 N -0.356 5.356 16 C 0.099 3.901 17 C -0.580 4.580 18 H 0.097 0.903 19 C -0.126 4.126 20 N -0.531 5.531 21 Si 0.702 3.298 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.185 1.185 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.228 0.772 46 H 0.042 0.958 47 H 0.036 0.964 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.781 17.247 11.283 20.686 hybrid contribution -0.208 -0.578 -0.042 0.616 sum -1.990 16.669 11.241 20.203 Atomic orbital electron populations 1.21898 0.94871 1.02627 1.01269 1.21046 0.96514 0.96084 0.96897 1.21880 1.00897 0.95702 1.01783 1.21494 1.01736 0.92766 0.96771 0.89251 1.21508 1.01020 0.98575 0.92028 1.21238 0.93951 1.01948 0.93896 1.21513 0.99368 0.99597 0.94168 1.21533 0.95543 1.01052 0.97655 1.21515 0.95652 1.00561 0.97715 1.21532 0.98728 1.00812 0.94769 1.21643 0.95928 1.00073 0.97585 1.20471 0.82390 0.87877 0.79999 1.90622 1.32235 1.77328 1.43236 1.46208 1.33992 1.12890 1.42474 1.19448 0.95694 0.77844 0.97131 1.21107 1.16593 0.96329 1.23954 0.90315 1.24793 0.96086 0.97232 0.94481 1.69882 1.38458 1.11947 1.32768 0.86831 0.82519 0.79309 0.81127 1.19889 1.20921 1.18516 0.92402 0.92965 0.92093 0.90583 0.92643 0.92654 0.92365 0.90669 0.91753 0.89905 0.92085 0.92555 0.92510 0.91959 0.92354 0.92520 0.91937 0.92385 0.92011 0.92378 0.77214 0.95835 0.96434 0.92306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 8.39 37.16 0.31 -1.59 16 2 C -0.09 -1.06 2.67 -90.62 -0.24 -1.30 16 3 C -0.15 -1.39 9.02 37.15 0.34 -1.05 16 4 C -0.11 -1.44 1.84 -91.77 -0.17 -1.61 16 5 H 0.09 1.11 6.34 -51.93 -0.33 0.78 16 6 C -0.09 -1.18 2.96 -26.73 -0.08 -1.25 16 7 C -0.09 -1.18 2.01 -90.62 -0.18 -1.37 16 8 C -0.11 -1.24 5.20 -26.73 -0.14 -1.38 16 9 C -0.12 -1.29 5.92 -26.73 -0.16 -1.45 16 10 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 11 C -0.12 -1.32 5.92 -26.74 -0.16 -1.48 16 12 C -0.11 -1.30 4.98 -26.74 -0.13 -1.43 16 13 C 0.51 9.42 5.44 -10.99 -0.06 9.36 16 14 O -0.55 -12.14 14.58 5.55 0.08 -12.06 16 15 N -0.71 -14.35 5.55 -61.47 -0.34 -14.69 16 16 C 0.22 5.47 4.50 -5.19 -0.02 5.45 16 17 C -0.54 -14.94 9.83 -34.44 -0.34 -15.28 16 18 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 19 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 20 N -0.89 -26.64 13.96 55.43 0.77 -25.86 16 21 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 22 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 25 H 0.06 0.67 6.80 -51.93 -0.35 0.32 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.95 7.19 -51.93 -0.37 0.58 16 28 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.52 6.42 -51.93 -0.33 0.18 16 32 H 0.07 1.06 6.42 -51.93 -0.33 0.73 16 33 H 0.06 0.68 6.34 -51.93 -0.33 0.35 16 34 H 0.08 1.36 6.42 -51.93 -0.33 1.03 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.73 6.47 -51.92 -0.34 0.39 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.39 7.18 8.32 -40.82 -0.34 6.84 16 46 H 0.02 0.62 7.20 -51.92 -0.37 0.25 16 47 H 0.02 0.46 7.57 -51.93 -0.39 0.06 16 48 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 359.88 15.07 5.42 5.42 Total: -1.00 -30.56 359.88 -8.93 -39.48 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -8.90 Total: 4.34 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -1.29 Total: -13.59 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.43 Total: -40.55 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.08 Total: -12.06 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.56 -8.93 -39.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427634658.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.748 kcal (2) G-P(sol) polarization free energy of solvation -30.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds