Wall clock time and date at job start Tue Mar 31 2020 05:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 120.00294 * 2 1 4 4 C 1.50703 * 119.99734 * 179.97438 * 2 1 3 5 5 H 1.08997 * 109.82458 * 354.43694 * 4 2 1 6 6 O 1.43240 * 109.83255 * 233.55193 * 4 2 1 7 7 C 1.43644 * 109.97293 * 242.11331 * 6 4 2 8 8 C 1.54947 * 105.13318 * 335.56837 * 7 6 4 9 9 C 1.54376 * 109.90418 * 115.37490 * 4 2 1 10 10 H 1.08992 * 110.85097 * 22.72161 * 9 4 2 11 11 C 1.53003 * 110.84620 * 259.10196 * 9 4 2 12 12 N 1.46900 * 109.47075 * 180.71556 * 11 9 4 13 13 C 1.46906 * 110.99747 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.46728 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47375 * 299.99695 * 14 13 12 16 16 C 1.53001 * 109.47305 * 59.99949 * 14 13 12 17 17 C 1.52999 * 109.46916 * 179.97438 * 14 13 12 18 18 C 1.50704 * 109.47219 * 180.02562 * 17 14 13 19 19 H 1.07993 * 119.99894 * 359.97438 * 18 17 14 20 20 C 1.37883 * 119.99882 * 180.02562 * 18 17 14 21 21 N 1.31520 * 120.00085 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99813 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47041 * 59.99925 * 22 20 18 24 24 H 1.48495 * 109.47128 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47232 * 300.00307 * 22 20 18 26 26 H 1.08004 * 120.00360 * 180.02562 * 1 2 3 27 27 H 1.08000 * 119.99907 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46711 * 269.99621 * 3 2 1 29 29 H 1.09001 * 109.47130 * 29.99098 * 3 2 1 30 30 H 1.09000 * 109.47613 * 149.99482 * 3 2 1 31 31 H 1.09006 * 110.31054 * 216.65675 * 7 6 4 32 32 H 1.08998 * 110.31336 * 94.48153 * 7 6 4 33 33 H 1.08995 * 111.12977 * 154.36873 * 8 7 6 34 34 H 1.09009 * 111.12280 * 278.52776 * 8 7 6 35 35 H 1.09000 * 109.47165 * 300.70968 * 11 9 4 36 36 H 1.08997 * 109.46976 * 60.71439 * 11 9 4 37 37 H 1.00896 * 111.00108 * 303.95288 * 12 11 9 38 38 H 1.09006 * 109.46823 * 299.99505 * 13 12 11 39 39 H 1.08995 * 109.47178 * 60.00150 * 13 12 11 40 40 H 1.08998 * 109.46647 * 60.00425 * 15 14 13 41 41 H 1.08998 * 109.46866 * 180.02562 * 15 14 13 42 42 H 1.08996 * 109.46883 * 300.00356 * 15 14 13 43 43 H 1.09003 * 109.46915 * 60.00131 * 16 14 13 44 44 H 1.08998 * 109.47229 * 179.97438 * 16 14 13 45 45 H 1.08998 * 109.47408 * 299.99997 * 16 14 13 46 46 H 1.09003 * 109.47498 * 299.99988 * 17 14 13 47 47 H 1.08997 * 109.47668 * 59.99967 * 17 14 13 48 48 H 0.96994 * 119.99926 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0634 -1.3052 0.0006 5 1 1.3644 -2.1355 0.1004 6 8 2.9997 -1.3253 1.0845 7 6 4.3384 -1.4308 0.5745 8 6 4.1898 -2.0934 -0.8182 9 6 2.8649 -1.4499 -1.3109 10 1 3.0512 -0.4751 -1.7613 11 6 2.1418 -2.3753 -2.2915 12 7 2.9374 -2.5051 -3.5196 13 6 2.2721 -3.3881 -4.4870 14 6 3.1284 -3.4978 -5.7502 15 6 3.3080 -2.1091 -6.3668 16 6 4.4980 -4.0765 -5.3892 17 6 2.4359 -4.4179 -6.7574 18 6 3.2796 -4.5265 -8.0014 19 1 4.2158 -3.9923 -8.0672 20 6 2.8556 -5.3070 -9.0560 21 7 1.7147 -5.9564 -8.9765 22 14 3.9011 -5.4410 -10.5982 23 1 5.2304 -6.0026 -10.2478 24 1 3.2284 -6.3332 -11.5763 25 1 4.0754 -4.0932 -11.1967 26 1 -0.5401 -0.9353 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 2.2453 1.6196 -1.0277 29 1 1.4744 2.0648 0.5137 30 1 3.0159 1.1748 0.5139 31 1 4.9443 -2.0576 1.2290 32 1 4.7852 -0.4414 0.4770 33 1 5.0217 -1.8279 -1.4704 34 1 4.0920 -3.1755 -0.7300 35 1 2.0131 -3.3575 -1.8367 36 1 1.1653 -1.9562 -2.5338 37 1 3.1256 -1.6008 -3.9258 38 1 2.1439 -4.3774 -4.0475 39 1 1.2967 -2.9756 -4.7445 40 1 3.8016 -1.4539 -5.6490 41 1 3.9176 -2.1874 -7.2669 42 1 2.3323 -1.6968 -6.6239 43 1 4.3701 -5.0659 -4.9500 44 1 5.1079 -4.1550 -6.2892 45 1 4.9916 -3.4214 -4.6715 46 1 2.3083 -5.4072 -6.3179 47 1 1.4600 -4.0061 -7.0147 48 1 1.4166 -6.5058 -9.7182 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435747848.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:17 Heat of formation + Delta-G solvation = -54.388794 kcal Electronic energy + Delta-G solvation = -22751.309298 eV Core-core repulsion = 19612.542619 eV Total energy + Delta-G solvation = -3138.766679 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.10186 -37.64518 -35.25211 -34.84397 -32.52959 -31.41167 -29.25284 -27.50225 -27.01099 -26.34825 -25.88344 -24.00753 -22.65438 -22.10082 -20.81330 -18.84825 -17.87171 -16.73776 -16.34948 -16.13646 -15.46054 -15.04895 -14.77725 -14.33329 -14.14321 -14.00946 -13.60856 -13.40091 -13.26412 -12.79434 -12.59244 -12.51048 -12.03459 -11.94620 -11.92759 -11.63770 -11.56454 -11.19140 -11.15460 -10.91904 -10.89272 -10.80306 -10.73920 -10.49150 -10.25947 -10.13568 -9.75865 -9.68621 -9.27327 -9.01834 -8.84034 -8.31653 -8.11588 -5.96333 -3.96618 1.92549 3.34332 3.39108 3.41160 3.81085 4.11070 4.36286 4.48480 4.61951 4.74097 4.86384 4.96259 5.08167 5.13461 5.30367 5.35055 5.39362 5.41772 5.56701 5.58373 5.62927 5.68549 5.72548 5.75268 5.78427 5.84004 5.93302 5.97873 6.15188 6.24246 6.32183 6.35676 6.49743 6.59399 6.64920 6.77635 6.81862 6.83724 7.19986 7.20382 7.25414 7.37710 7.64072 7.70363 7.85280 8.03843 8.48095 9.08605 9.66135 11.15337 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.032271 B = 0.003031 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.456609 B = 9235.751940 C = 9531.473682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.133 4.133 3 C -0.116 4.116 4 C 0.120 3.880 5 H 0.085 0.915 6 O -0.374 6.374 7 C 0.045 3.955 8 C -0.136 4.136 9 C -0.109 4.109 10 H 0.084 0.916 11 C 0.069 3.931 12 N -0.683 5.683 13 C 0.070 3.930 14 C -0.058 4.058 15 C -0.129 4.129 16 C -0.115 4.115 17 C 0.034 3.966 18 C -0.508 4.508 19 H 0.058 0.942 20 C 0.055 3.945 21 N -0.898 5.898 22 Si 0.888 3.112 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.278 1.278 26 H 0.098 0.902 27 H 0.100 0.900 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.028 0.972 37 H 0.337 0.663 38 H 0.066 0.934 39 H 0.023 0.977 40 H 0.033 0.967 41 H 0.064 0.936 42 H 0.039 0.961 43 H 0.039 0.961 44 H 0.054 0.946 45 H 0.042 0.958 46 H 0.015 0.985 47 H 0.012 0.988 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.708 11.840 18.265 21.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.133 4.133 3 C -0.173 4.173 4 C 0.062 3.938 5 H 0.102 0.898 6 O -0.293 6.293 7 C -0.032 4.032 8 C -0.173 4.173 9 C -0.128 4.128 10 H 0.103 0.897 11 C -0.061 4.061 12 N -0.315 5.315 13 C -0.058 4.058 14 C -0.059 4.059 15 C -0.186 4.186 16 C -0.172 4.172 17 C -0.003 4.003 18 C -0.546 4.546 19 H 0.076 0.924 20 C -0.146 4.146 21 N -0.538 5.538 22 Si 0.716 3.284 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.204 1.204 26 H 0.117 0.883 27 H 0.118 0.882 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.047 0.953 37 H 0.156 0.844 38 H 0.084 0.916 39 H 0.041 0.959 40 H 0.052 0.948 41 H 0.083 0.917 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.073 0.927 45 H 0.061 0.939 46 H 0.033 0.967 47 H 0.030 0.970 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.935 11.230 18.634 21.842 hybrid contribution -0.326 0.395 -1.516 1.601 sum 1.609 11.625 17.117 20.754 Atomic orbital electron populations 1.23702 0.95051 1.02097 1.01458 1.22008 0.95436 0.95911 0.99943 1.20778 1.00545 0.94131 1.01830 1.21759 0.91192 0.94474 0.86420 0.89752 1.88455 1.15413 1.94911 1.30531 1.23475 0.84576 0.99816 0.95311 1.23180 0.97628 1.01152 0.95349 1.22705 0.95253 0.99971 0.94856 0.89748 1.21861 0.94162 0.98751 0.91319 1.60571 1.47450 1.17473 1.05992 1.22110 0.95033 0.96215 0.92484 1.20628 0.95698 0.96318 0.93228 1.21765 1.00630 0.95889 1.00306 1.21589 0.96450 0.99133 1.00057 1.19116 0.95182 0.93563 0.92478 1.21203 1.05894 1.27738 0.99780 0.92351 1.25018 0.95089 0.95904 0.98569 1.69956 1.20756 1.31017 1.32047 0.86724 0.80566 0.77895 0.83203 1.20300 1.21441 1.20364 0.88324 0.88178 0.91592 0.91940 0.91573 0.89816 0.92506 0.89422 0.90030 0.90943 0.95336 0.84398 0.91591 0.95899 0.94844 0.91729 0.94146 0.94220 0.92743 0.93916 0.96710 0.96964 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.70 13.91 29.01 0.40 -1.29 16 2 C -0.13 -1.31 5.07 -101.07 -0.51 -1.82 16 3 C -0.12 -1.00 9.43 36.01 0.34 -0.66 16 4 C 0.12 1.25 3.34 -27.16 -0.09 1.16 16 5 H 0.08 0.89 7.49 -51.93 -0.39 0.50 16 6 O -0.37 -4.30 10.52 -35.23 -0.37 -4.67 16 7 C 0.04 0.41 7.78 38.18 0.30 0.71 16 8 C -0.14 -1.32 6.44 -24.48 -0.16 -1.47 16 9 C -0.11 -1.10 2.65 -88.68 -0.23 -1.34 16 10 H 0.08 0.85 7.34 -51.93 -0.38 0.47 16 11 C 0.07 0.81 4.98 -3.82 -0.02 0.79 16 12 N -0.68 -9.33 5.53 -113.77 -0.63 -9.96 16 13 C 0.07 1.18 4.65 -3.82 -0.02 1.17 16 14 C -0.06 -1.14 0.60 -154.51 -0.09 -1.24 16 15 C -0.13 -2.35 7.89 37.16 0.29 -2.05 16 16 C -0.11 -2.19 8.06 37.16 0.30 -1.89 16 17 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 18 C -0.51 -13.84 7.65 -34.44 -0.26 -14.10 16 19 H 0.06 1.54 5.68 -52.49 -0.30 1.24 16 20 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 21 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 22 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 H 0.10 0.85 7.85 -52.48 -0.41 0.44 16 27 H 0.10 0.79 8.04 -52.49 -0.42 0.37 16 28 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 29 H 0.06 0.48 8.06 -51.93 -0.42 0.06 16 30 H 0.07 0.58 7.68 -51.93 -0.40 0.19 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.08 0.85 8.02 -51.92 -0.42 0.44 16 35 H 0.07 0.88 8.11 -51.93 -0.42 0.45 16 36 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.34 4.45 6.77 -39.29 -0.27 4.19 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.03 0.51 6.57 -51.93 -0.34 0.17 16 41 H 0.06 1.29 6.62 -51.93 -0.34 0.94 16 42 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.05 1.11 6.62 -51.93 -0.34 0.77 16 45 H 0.04 0.72 7.60 -51.93 -0.39 0.32 16 46 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 48 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 372.37 15.07 5.61 5.61 Total: -1.00 -29.23 372.37 -8.67 -37.89 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -9.03 Total: 0.56 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: 0.03 Total: -19.85 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.11 Total: -36.07 kcal Atomic # 8 Polarization: -4.30 SS G_CDS: -0.37 Total: -4.67 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.23 -8.67 -37.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435747848.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.495 kcal (2) G-P(sol) polarization free energy of solvation -29.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds