Wall clock time and date at job start Tue Mar 31 2020 05:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 119.99850 * 2 1 4 4 C 1.50697 * 119.99953 * 179.97438 * 2 1 3 5 5 H 1.08999 * 110.32745 * 129.48777 * 4 2 1 6 6 O 1.44418 * 110.37234 * 7.12398 * 4 2 1 7 7 C 1.44428 * 105.27251 * 200.65272 * 6 4 2 8 8 C 1.54800 * 104.85966 * 40.46242 * 7 6 4 9 9 C 1.54482 * 110.37624 * 251.73703 * 4 2 1 10 10 H 1.09000 * 110.51405 * 261.59816 * 9 4 2 11 11 C 1.53000 * 110.50649 * 24.16706 * 9 4 2 12 12 N 1.46906 * 109.46997 * 183.18815 * 11 9 4 13 13 C 1.46890 * 111.00045 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.47130 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47106 * 299.99968 * 14 13 12 16 16 C 1.53002 * 109.46918 * 59.99975 * 14 13 12 17 17 C 1.53005 * 109.47354 * 180.02562 * 14 13 12 18 18 C 1.50696 * 109.46944 * 180.02562 * 17 14 13 19 19 H 1.07996 * 120.00283 * 0.02562 * 18 17 14 20 20 C 1.37881 * 119.99470 * 180.02562 * 18 17 14 21 21 N 1.31513 * 120.00388 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99615 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47349 * 89.99759 * 22 20 18 24 24 H 1.48501 * 109.46830 * 210.00011 * 22 20 18 25 25 H 1.48500 * 109.47140 * 329.99534 * 22 20 18 26 26 H 1.08002 * 120.00010 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.00204 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46998 * 184.66131 * 3 2 1 29 29 H 1.09001 * 109.47224 * 304.65972 * 3 2 1 30 30 H 1.08998 * 109.47760 * 64.66553 * 3 2 1 31 31 H 1.09009 * 110.36852 * 159.33845 * 7 6 4 32 32 H 1.08993 * 110.37425 * 281.56191 * 7 6 4 33 33 H 1.08998 * 110.60839 * 217.51307 * 8 7 6 34 34 H 1.08995 * 110.55661 * 94.69815 * 8 7 6 35 35 H 1.09002 * 109.47210 * 63.18920 * 11 9 4 36 36 H 1.08998 * 109.47495 * 303.18238 * 11 9 4 37 37 H 1.00907 * 110.99594 * 303.95303 * 12 11 9 38 38 H 1.08995 * 109.47288 * 299.99944 * 13 12 11 39 39 H 1.09005 * 109.47514 * 60.00208 * 13 12 11 40 40 H 1.09002 * 109.46787 * 60.00322 * 15 14 13 41 41 H 1.08999 * 109.46883 * 179.97438 * 15 14 13 42 42 H 1.08996 * 109.47171 * 299.99997 * 15 14 13 43 43 H 1.08995 * 109.46946 * 60.00126 * 16 14 13 44 44 H 1.08997 * 109.46664 * 179.97438 * 16 14 13 45 45 H 1.08992 * 109.46904 * 299.99934 * 16 14 13 46 46 H 1.08995 * 109.47170 * 300.00278 * 17 14 13 47 47 H 1.09004 * 109.46850 * 59.99644 * 17 14 13 48 48 H 0.96998 * 120.00006 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 1 2.8157 -1.3084 -0.7882 6 8 1.1514 -2.4122 -0.1668 7 6 1.8595 -3.5674 0.3334 8 6 2.5912 -3.0659 1.6020 9 6 2.7254 -1.5434 1.3759 10 1 3.7755 -1.2522 1.3500 11 6 1.9833 -0.7716 2.4688 12 7 2.6754 -0.9526 3.7520 13 6 1.9891 -0.2245 4.8275 14 6 2.7371 -0.4370 6.1452 15 6 2.7680 -1.9299 6.4790 16 6 4.1689 0.0849 6.0088 17 6 2.0220 0.3209 7.2656 18 6 2.7591 0.1120 8.5633 19 1 3.6488 -0.4997 8.5865 20 6 2.2975 0.7019 9.7209 21 7 1.2143 1.4472 9.6925 22 14 3.2116 0.4435 11.3294 23 1 4.2371 1.5051 11.4920 24 1 2.2510 0.5058 12.4601 25 1 3.8733 -0.8858 11.3147 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 3.1322 1.1077 -0.0835 29 1 1.7390 1.9120 -0.8453 30 1 1.8644 1.8397 0.9288 31 1 1.1576 -4.3614 0.5887 32 1 2.5787 -3.9209 -0.4054 33 1 3.5749 -3.5278 1.6853 34 1 1.9962 -3.2688 2.4924 35 1 0.9633 -1.1471 2.5501 36 1 1.9613 0.2880 2.2143 37 1 2.7659 -1.9316 3.9790 38 1 1.9667 0.8390 4.5895 39 1 0.9692 -0.5966 4.9250 40 1 3.2773 -2.4701 5.6809 41 1 3.3013 -2.0813 7.4175 42 1 1.7481 -2.3016 6.5761 43 1 4.1468 1.1484 5.7710 44 1 4.7015 -0.0661 6.9477 45 1 4.6780 -0.4554 5.2108 46 1 1.9995 1.3844 7.0280 47 1 1.0021 -0.0514 7.3625 48 1 0.8895 1.8618 10.5070 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435747849.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:19 Heat of formation + Delta-G solvation = -49.510421 kcal Electronic energy + Delta-G solvation = -23058.059826 eV Core-core repulsion = 19919.504689 eV Total energy + Delta-G solvation = -3138.555137 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.20904 -37.56864 -35.40998 -34.60965 -32.49359 -31.37167 -28.96807 -27.34230 -27.01861 -26.32530 -25.95983 -24.06831 -22.96784 -22.09198 -20.53948 -18.58390 -17.77282 -16.76392 -16.25276 -16.12345 -15.53467 -15.37667 -14.79914 -14.32219 -14.06272 -13.80101 -13.57687 -13.27209 -13.15682 -12.90684 -12.56011 -12.45934 -12.14101 -11.98275 -11.76480 -11.66863 -11.37088 -11.16308 -11.05357 -10.94493 -10.78937 -10.72287 -10.64078 -10.47196 -10.23411 -10.11046 -10.01681 -9.66280 -9.08874 -8.98664 -8.80484 -8.30344 -8.04289 -5.94830 -3.94957 2.12035 3.34132 3.40636 3.43266 3.63252 4.28102 4.35901 4.50493 4.57664 4.84732 4.92483 4.98710 5.05625 5.20995 5.33881 5.37064 5.40935 5.45739 5.52596 5.58502 5.62940 5.74347 5.75711 5.80802 5.84014 5.91191 5.99321 6.04897 6.09834 6.29012 6.36261 6.44666 6.52906 6.55087 6.67783 6.80748 6.84193 6.88671 7.22515 7.25197 7.27854 7.43632 7.70134 7.73922 7.87849 8.05601 8.50080 9.10500 9.67768 11.16871 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.028371 B = 0.003346 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.691634 B = 8365.897407 C = 8798.385527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.130 4.130 3 C -0.115 4.115 4 C 0.116 3.884 5 H 0.075 0.925 6 O -0.369 6.369 7 C 0.045 3.955 8 C -0.152 4.152 9 C -0.108 4.108 10 H 0.093 0.907 11 C 0.068 3.932 12 N -0.687 5.687 13 C 0.071 3.929 14 C -0.058 4.058 15 C -0.128 4.128 16 C -0.115 4.115 17 C 0.034 3.966 18 C -0.507 4.507 19 H 0.059 0.941 20 C 0.055 3.945 21 N -0.898 5.898 22 Si 0.887 3.113 23 H -0.282 1.282 24 H -0.288 1.288 25 H -0.275 1.275 26 H 0.096 0.904 27 H 0.106 0.894 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.028 0.972 36 H 0.078 0.922 37 H 0.335 0.665 38 H 0.065 0.935 39 H 0.022 0.978 40 H 0.032 0.968 41 H 0.064 0.936 42 H 0.039 0.961 43 H 0.039 0.961 44 H 0.054 0.946 45 H 0.042 0.958 46 H 0.015 0.985 47 H 0.012 0.988 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.214 -6.570 -20.562 21.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.130 4.130 3 C -0.172 4.172 4 C 0.058 3.942 5 H 0.093 0.907 6 O -0.288 6.288 7 C -0.032 4.032 8 C -0.190 4.190 9 C -0.127 4.127 10 H 0.111 0.889 11 C -0.062 4.062 12 N -0.319 5.319 13 C -0.058 4.058 14 C -0.059 4.059 15 C -0.186 4.186 16 C -0.173 4.173 17 C -0.004 4.004 18 C -0.545 4.545 19 H 0.077 0.923 20 C -0.146 4.146 21 N -0.538 5.538 22 Si 0.716 3.284 23 H -0.208 1.208 24 H -0.214 1.214 25 H -0.200 1.200 26 H 0.115 0.885 27 H 0.125 0.875 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.046 0.954 36 H 0.096 0.904 37 H 0.154 0.846 38 H 0.083 0.917 39 H 0.040 0.960 40 H 0.051 0.949 41 H 0.083 0.917 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.073 0.927 45 H 0.061 0.939 46 H 0.033 0.967 47 H 0.031 0.969 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.333 -5.953 -20.651 21.619 hybrid contribution -0.261 -0.657 1.244 1.431 sum 2.072 -6.610 -19.408 20.607 Atomic orbital electron populations 1.23678 0.95426 1.02136 0.99999 1.21438 0.95653 0.94064 1.01839 1.20815 1.00062 0.93964 1.02359 1.21862 0.90489 0.85785 0.96088 0.90688 1.89103 1.38770 1.16855 1.84098 1.23446 0.95965 0.89405 0.94362 1.23088 1.01521 0.95467 0.98898 1.22508 1.01148 0.94835 0.94249 0.88883 1.22041 0.94654 1.00370 0.89098 1.60629 1.52832 1.16373 1.02068 1.22083 0.94702 0.98009 0.90975 1.20629 0.96044 0.95700 0.93496 1.21767 1.00371 0.95773 1.00675 1.21590 0.95928 0.99473 1.00268 1.19122 0.95018 0.94787 0.91461 1.21241 1.10735 1.29740 0.92781 0.92304 1.25017 0.95094 0.95504 0.98969 1.69967 1.22749 1.33102 1.27943 0.86668 0.79589 0.78498 0.83689 1.20779 1.21400 1.19953 0.88542 0.87535 0.91833 0.91562 0.90963 0.89188 0.92337 0.90196 0.90651 0.95423 0.90401 0.84571 0.91680 0.96022 0.94902 0.91722 0.94158 0.94209 0.92749 0.93917 0.96709 0.96950 0.93177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.89 13.71 29.02 0.40 -1.50 16 2 C -0.13 -1.35 3.57 -101.07 -0.36 -1.71 16 3 C -0.12 -1.03 9.27 36.01 0.33 -0.69 16 4 C 0.12 1.20 3.47 -27.11 -0.09 1.10 16 5 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 6 O -0.37 -4.24 9.83 -35.23 -0.35 -4.58 16 7 C 0.05 0.40 7.64 38.11 0.29 0.70 16 8 C -0.15 -1.42 6.27 -24.99 -0.16 -1.58 16 9 C -0.11 -1.13 3.24 -89.05 -0.29 -1.42 16 10 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 11 C 0.07 0.86 4.12 -3.82 -0.02 0.85 16 12 N -0.69 -9.98 5.71 -113.78 -0.65 -10.63 16 13 C 0.07 1.25 4.65 -3.83 -0.02 1.23 16 14 C -0.06 -1.17 0.60 -154.50 -0.09 -1.26 16 15 C -0.13 -2.40 7.89 37.16 0.29 -2.11 16 16 C -0.12 -2.24 8.07 37.16 0.30 -1.94 16 17 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 18 C -0.51 -13.93 7.65 -34.44 -0.26 -14.19 16 19 H 0.06 1.57 5.68 -52.49 -0.30 1.27 16 20 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 21 N -0.90 -26.99 13.29 55.43 0.74 -26.26 16 22 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 26 H 0.10 0.93 8.05 -52.49 -0.42 0.50 16 27 H 0.11 1.24 6.91 -52.49 -0.36 0.88 16 28 H 0.06 0.52 8.01 -51.93 -0.42 0.11 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.68 7.34 -51.93 -0.38 0.30 16 31 H 0.09 0.72 8.14 -51.92 -0.42 0.30 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.77 7.11 -51.93 -0.37 0.40 16 35 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 1.02 5.40 -51.93 -0.28 0.74 16 37 H 0.34 4.68 5.63 -39.29 -0.22 4.46 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 41 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16 42 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.05 1.13 6.62 -51.93 -0.34 0.78 16 45 H 0.04 0.74 7.60 -51.93 -0.39 0.35 16 46 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 48 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 365.03 15.07 5.50 5.50 Total: -1.00 -29.66 365.03 -8.47 -38.13 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -8.81 Total: 1.53 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: 0.12 Total: -20.33 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.09 Total: -36.89 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: -0.35 Total: -4.58 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.66 -8.47 -38.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435747849.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.381 kcal (2) G-P(sol) polarization free energy of solvation -29.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds