Wall clock time and date at job start Tue Mar 31 2020 05:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 119.99850 * 2 1 4 4 C 1.50697 * 119.99953 * 179.97438 * 2 1 3 5 5 H 1.08999 * 110.32745 * 129.48777 * 4 2 1 6 6 O 1.44418 * 110.37234 * 7.12398 * 4 2 1 7 7 C 1.44428 * 105.27251 * 200.65272 * 6 4 2 8 8 C 1.54800 * 104.85966 * 40.46242 * 7 6 4 9 9 C 1.54482 * 110.37624 * 251.73703 * 4 2 1 10 10 H 1.09000 * 110.51405 * 261.59816 * 9 4 2 11 11 C 1.53000 * 110.50649 * 24.16706 * 9 4 2 12 12 N 1.46906 * 109.46997 * 183.18815 * 11 9 4 13 13 C 1.46890 * 111.00045 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.47130 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47106 * 299.99968 * 14 13 12 16 16 C 1.53002 * 109.46918 * 59.99975 * 14 13 12 17 17 C 1.53005 * 109.47354 * 180.02562 * 14 13 12 18 18 C 1.50696 * 109.46944 * 180.02562 * 17 14 13 19 19 H 1.07996 * 120.00283 * 0.02562 * 18 17 14 20 20 C 1.37881 * 119.99470 * 180.02562 * 18 17 14 21 21 N 1.31513 * 120.00388 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99615 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47349 * 89.99759 * 22 20 18 24 24 H 1.48501 * 109.46830 * 210.00011 * 22 20 18 25 25 H 1.48500 * 109.47140 * 329.99534 * 22 20 18 26 26 H 1.08002 * 120.00010 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.00204 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46998 * 184.66131 * 3 2 1 29 29 H 1.09001 * 109.47224 * 304.65972 * 3 2 1 30 30 H 1.08998 * 109.47760 * 64.66553 * 3 2 1 31 31 H 1.09009 * 110.36852 * 159.33845 * 7 6 4 32 32 H 1.08993 * 110.37425 * 281.56191 * 7 6 4 33 33 H 1.08998 * 110.60839 * 217.51307 * 8 7 6 34 34 H 1.08995 * 110.55661 * 94.69815 * 8 7 6 35 35 H 1.09002 * 109.47210 * 63.18920 * 11 9 4 36 36 H 1.08998 * 109.47495 * 303.18238 * 11 9 4 37 37 H 1.00907 * 110.99594 * 303.95303 * 12 11 9 38 38 H 1.08995 * 109.47288 * 299.99944 * 13 12 11 39 39 H 1.09005 * 109.47514 * 60.00208 * 13 12 11 40 40 H 1.09002 * 109.46787 * 60.00322 * 15 14 13 41 41 H 1.08999 * 109.46883 * 179.97438 * 15 14 13 42 42 H 1.08996 * 109.47171 * 299.99997 * 15 14 13 43 43 H 1.08995 * 109.46946 * 60.00126 * 16 14 13 44 44 H 1.08997 * 109.46664 * 179.97438 * 16 14 13 45 45 H 1.08992 * 109.46904 * 299.99934 * 16 14 13 46 46 H 1.08995 * 109.47170 * 300.00278 * 17 14 13 47 47 H 1.09004 * 109.46850 * 59.99644 * 17 14 13 48 48 H 0.96998 * 120.00006 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 1 2.8157 -1.3084 -0.7882 6 8 1.1514 -2.4122 -0.1668 7 6 1.8595 -3.5674 0.3334 8 6 2.5912 -3.0659 1.6020 9 6 2.7254 -1.5434 1.3759 10 1 3.7755 -1.2522 1.3500 11 6 1.9833 -0.7716 2.4688 12 7 2.6754 -0.9526 3.7520 13 6 1.9891 -0.2245 4.8275 14 6 2.7371 -0.4370 6.1452 15 6 2.7680 -1.9299 6.4790 16 6 4.1689 0.0849 6.0088 17 6 2.0220 0.3209 7.2656 18 6 2.7591 0.1120 8.5633 19 1 3.6488 -0.4997 8.5865 20 6 2.2975 0.7019 9.7209 21 7 1.2143 1.4472 9.6925 22 14 3.2116 0.4435 11.3294 23 1 4.2371 1.5051 11.4920 24 1 2.2510 0.5058 12.4601 25 1 3.8733 -0.8858 11.3147 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 3.1322 1.1077 -0.0835 29 1 1.7390 1.9120 -0.8453 30 1 1.8644 1.8397 0.9288 31 1 1.1576 -4.3614 0.5887 32 1 2.5787 -3.9209 -0.4054 33 1 3.5749 -3.5278 1.6853 34 1 1.9962 -3.2688 2.4924 35 1 0.9633 -1.1471 2.5501 36 1 1.9613 0.2880 2.2143 37 1 2.7659 -1.9316 3.9790 38 1 1.9667 0.8390 4.5895 39 1 0.9692 -0.5966 4.9250 40 1 3.2773 -2.4701 5.6809 41 1 3.3013 -2.0813 7.4175 42 1 1.7481 -2.3016 6.5761 43 1 4.1468 1.1484 5.7710 44 1 4.7015 -0.0661 6.9477 45 1 4.6780 -0.4554 5.2108 46 1 1.9995 1.3844 7.0280 47 1 1.0021 -0.0514 7.3625 48 1 0.8895 1.8618 10.5070 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435747849.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:18 Heat of formation + Delta-G solvation = -66.575507 kcal Electronic energy + Delta-G solvation = -23058.799824 eV Core-core repulsion = 19919.504689 eV Total energy + Delta-G solvation = -3139.295135 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.02928 -39.09719 -36.35342 -35.79304 -34.37898 -32.54464 -29.81749 -28.95499 -28.08782 -27.89310 -27.27502 -25.60530 -23.79443 -23.71992 -21.39524 -19.67864 -19.15275 -18.33317 -17.63700 -16.97424 -16.62283 -16.53009 -16.29142 -15.68069 -15.40900 -14.88264 -14.69886 -14.62375 -14.17450 -14.03072 -13.94305 -13.85754 -13.46978 -13.32781 -12.91298 -12.74321 -12.69283 -12.57433 -12.45470 -12.26341 -12.15348 -12.14513 -12.01004 -11.83436 -11.75819 -11.46100 -11.36526 -10.86954 -10.81803 -10.68050 -10.50531 -9.88248 -9.30752 -8.13793 -6.21121 1.30194 1.41331 1.41924 1.52459 2.43976 2.88546 3.20155 3.22747 3.55146 3.76187 4.05319 4.08707 4.17074 4.21538 4.23058 4.31081 4.36894 4.42438 4.49013 4.63533 4.67018 4.76078 4.78720 4.82347 4.86638 4.88877 4.94268 4.99682 5.06643 5.08075 5.11033 5.19392 5.20915 5.22437 5.23799 5.51582 5.53896 5.58954 5.65020 5.66419 5.76309 5.87312 5.92711 6.07394 6.11465 6.36676 6.53462 6.94144 7.46397 8.98706 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.028371 B = 0.003346 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.691634 B = 8365.897407 C = 8798.385527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.132 4.132 3 C -0.114 4.114 4 C 0.114 3.886 5 H 0.092 0.908 6 O -0.392 6.392 7 C 0.042 3.958 8 C -0.150 4.150 9 C -0.103 4.103 10 H 0.103 0.897 11 C 0.072 3.928 12 N -0.677 5.677 13 C 0.083 3.917 14 C -0.055 4.055 15 C -0.122 4.122 16 C -0.106 4.106 17 C 0.039 3.961 18 C -0.514 4.514 19 H 0.067 0.933 20 C -0.005 4.005 21 N -0.939 5.939 22 Si 0.957 3.043 23 H -0.275 1.275 24 H -0.287 1.287 25 H -0.261 1.261 26 H 0.103 0.897 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.064 0.936 35 H 0.012 0.988 36 H 0.074 0.926 37 H 0.342 0.658 38 H 0.055 0.945 39 H 0.010 0.990 40 H 0.068 0.932 41 H 0.048 0.952 42 H 0.033 0.967 43 H 0.030 0.970 44 H 0.039 0.961 45 H 0.070 0.930 46 H -0.017 1.017 47 H -0.019 1.019 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.291 -7.911 -21.504 23.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.132 4.132 3 C -0.170 4.170 4 C 0.056 3.944 5 H 0.109 0.891 6 O -0.311 6.311 7 C -0.034 4.034 8 C -0.187 4.187 9 C -0.122 4.122 10 H 0.121 0.879 11 C -0.057 4.057 12 N -0.309 5.309 13 C -0.046 4.046 14 C -0.055 4.055 15 C -0.179 4.179 16 C -0.163 4.163 17 C 0.002 3.998 18 C -0.552 4.552 19 H 0.085 0.915 20 C -0.201 4.201 21 N -0.580 5.580 22 Si 0.782 3.218 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.186 1.186 26 H 0.122 0.878 27 H 0.112 0.888 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.114 0.886 32 H 0.095 0.905 33 H 0.117 0.883 34 H 0.083 0.917 35 H 0.031 0.969 36 H 0.092 0.908 37 H 0.162 0.838 38 H 0.073 0.927 39 H 0.028 0.972 40 H 0.087 0.913 41 H 0.067 0.933 42 H 0.053 0.947 43 H 0.049 0.951 44 H 0.058 0.942 45 H 0.089 0.911 46 H 0.002 0.998 47 H 0.000 1.000 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.425 -7.314 -21.609 23.238 hybrid contribution -0.950 -0.233 1.484 1.777 sum 3.474 -7.547 -20.125 21.773 Atomic orbital electron populations 1.23690 0.95868 1.01923 1.01156 1.21693 0.95688 0.94971 1.00859 1.20827 1.00509 0.93244 1.02463 1.21964 0.90598 0.85431 0.96371 0.89061 1.89095 1.39820 1.17833 1.84383 1.23608 0.96399 0.88837 0.94604 1.23093 1.02410 0.94599 0.98644 1.22453 1.01111 0.95330 0.93278 0.87917 1.22028 0.94122 1.00641 0.88881 1.60576 1.52174 1.16478 1.01686 1.21788 0.94002 0.97916 0.90917 1.20494 0.96186 0.96070 0.92770 1.21683 1.00294 0.94772 1.01160 1.21494 0.95135 0.99266 1.00423 1.19010 0.93957 0.93483 0.93357 1.21622 1.10829 1.29201 0.93561 0.91458 1.25935 0.95948 0.95304 1.02941 1.70114 1.24564 1.34407 1.28948 0.85564 0.78274 0.79013 0.78934 1.20075 1.21309 1.18555 0.87835 0.88823 0.90820 0.90403 0.91701 0.88602 0.90481 0.88307 0.91699 0.96937 0.90757 0.83821 0.92670 0.97191 0.91301 0.93309 0.94750 0.95121 0.94200 0.91145 0.99848 1.00050 0.93178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.06 13.71 67.78 0.93 -3.13 16 2 C -0.13 -2.60 3.57 -16.48 -0.06 -2.66 16 3 C -0.11 -1.86 9.27 71.24 0.66 -1.20 16 4 C 0.11 2.14 3.47 30.35 0.11 2.24 16 5 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 6 O -0.39 -8.43 9.83 -148.98 -1.46 -9.90 16 7 C 0.04 0.65 7.64 72.60 0.55 1.21 16 8 C -0.15 -2.40 6.27 31.72 0.20 -2.20 16 9 C -0.10 -1.91 3.24 -9.78 -0.03 -1.94 16 10 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 11 C 0.07 1.75 4.12 86.30 0.36 2.11 16 12 N -0.68 -18.45 5.71 -513.89 -2.94 -21.38 16 13 C 0.08 2.92 4.65 86.31 0.40 3.32 16 14 C -0.05 -2.19 0.60 -52.18 -0.03 -2.22 16 15 C -0.12 -4.39 7.89 71.98 0.57 -3.83 16 16 C -0.11 -3.98 8.07 71.98 0.58 -3.40 16 17 C 0.04 2.08 4.04 29.85 0.12 2.20 16 18 C -0.51 -28.59 7.65 25.60 0.20 -28.40 16 19 H 0.07 3.57 5.68 -2.91 -0.02 3.55 16 20 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 21 N -0.94 -57.90 13.29 21.45 0.28 -57.62 16 22 Si 0.96 44.53 29.54 68.60 2.03 46.55 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 24 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 25 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 26 H 0.10 1.99 8.05 -2.91 -0.02 1.96 16 27 H 0.09 2.23 6.91 -2.91 -0.02 2.21 16 28 H 0.07 1.04 8.01 -2.39 -0.02 1.03 16 29 H 0.08 1.08 8.14 -2.39 -0.02 1.07 16 30 H 0.06 1.17 7.34 -2.39 -0.02 1.15 16 31 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.06 1.19 7.11 -2.39 -0.02 1.17 16 35 H 0.01 0.34 8.14 -2.39 -0.02 0.33 16 36 H 0.07 1.87 5.40 -2.39 -0.01 1.86 16 37 H 0.34 8.63 5.63 -89.69 -0.51 8.13 16 38 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 40 H 0.07 1.98 6.57 -2.39 -0.02 1.96 16 41 H 0.05 1.91 6.62 -2.39 -0.02 1.89 16 42 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.04 1.60 6.62 -2.39 -0.02 1.58 16 45 H 0.07 2.25 7.60 -2.39 -0.02 2.23 16 46 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 47 H -0.02 -1.10 8.14 -2.38 -0.02 -1.12 16 48 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -64.73 365.03 3.32 -61.41 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.40 Total: 18.64 kcal Atomic # 6 Polarization: -42.72 SS G_CDS: 5.01 Total: -37.71 kcal Atomic # 7 Polarization: -76.35 SS G_CDS: -2.65 Total: -79.00 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -1.46 Total: -9.90 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -64.73 3.32 -61.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435747849.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.162 kcal (2) G-P(sol) polarization free energy of solvation -64.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds