Wall clock time and date at job start Tue Mar 31 2020 05:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50698 * 119.99956 * 2 1 4 4 C 1.50699 * 119.99725 * 179.97438 * 2 1 3 5 5 H 1.09004 * 109.86685 * 20.46294 * 4 2 1 6 6 O 1.43743 * 109.87482 * 141.62140 * 4 2 1 7 7 C 1.44388 * 106.97181 * 145.94047 * 6 4 2 8 8 C 1.54992 * 103.48651 * 319.93801 * 7 6 4 9 9 C 1.54091 * 109.88059 * 259.45644 * 4 2 1 10 10 H 1.08998 * 110.49475 * 119.73846 * 9 4 2 11 11 C 1.53005 * 110.48989 * 357.22372 * 9 4 2 12 12 N 1.46903 * 109.47316 * 176.94453 * 11 9 4 13 13 C 1.46893 * 110.99694 * 180.02562 * 12 11 9 14 14 C 1.53007 * 109.46693 * 179.97438 * 13 12 11 15 15 C 1.53000 * 109.46978 * 59.99958 * 14 13 12 16 16 C 1.52994 * 109.47297 * 299.99871 * 14 13 12 17 17 C 1.53005 * 109.46797 * 179.97438 * 14 13 12 18 18 C 1.50702 * 109.46711 * 180.02562 * 17 14 13 19 19 H 1.08000 * 120.00394 * 359.97438 * 18 17 14 20 20 C 1.37877 * 119.99901 * 180.02562 * 18 17 14 21 21 N 1.31518 * 119.99730 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00029 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.46796 * 180.02562 * 22 20 18 24 24 H 1.48505 * 109.47041 * 299.99750 * 22 20 18 25 25 H 1.48496 * 109.47321 * 60.00181 * 22 20 18 26 26 H 1.08006 * 119.99851 * 0.02562 * 1 2 3 27 27 H 1.08001 * 120.00322 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46906 * 245.41221 * 3 2 1 29 29 H 1.09002 * 109.47547 * 5.41746 * 3 2 1 30 30 H 1.08997 * 109.46889 * 125.42186 * 3 2 1 31 31 H 1.08997 * 110.61890 * 78.44127 * 7 6 4 32 32 H 1.09003 * 110.61540 * 201.28156 * 7 6 4 33 33 H 1.09001 * 110.91348 * 278.82098 * 8 7 6 34 34 H 1.09011 * 110.90433 * 155.22390 * 8 7 6 35 35 H 1.08992 * 109.46743 * 56.93779 * 11 9 4 36 36 H 1.09002 * 109.46438 * 296.94295 * 11 9 4 37 37 H 1.00903 * 111.00010 * 56.03959 * 12 11 9 38 38 H 1.08993 * 109.47701 * 59.99767 * 13 12 11 39 39 H 1.09000 * 109.47116 * 299.99272 * 13 12 11 40 40 H 1.08999 * 109.47234 * 179.97438 * 15 14 13 41 41 H 1.08998 * 109.47319 * 299.99990 * 15 14 13 42 42 H 1.09000 * 109.47444 * 59.99969 * 15 14 13 43 43 H 1.09002 * 109.47187 * 299.99946 * 16 14 13 44 44 H 1.09000 * 109.47217 * 59.99675 * 16 14 13 45 45 H 1.08995 * 109.47409 * 180.02562 * 16 14 13 46 46 H 1.09002 * 109.47065 * 60.00434 * 17 14 13 47 47 H 1.09000 * 109.47400 * 299.99893 * 17 14 13 48 48 H 0.96996 * 120.00337 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3051 0.0006 5 1 1.4168 -2.1063 -0.3575 6 8 3.2255 -1.1989 -0.8387 7 6 4.2560 -2.0116 -0.2367 8 6 4.0922 -1.7377 1.2801 9 6 2.5550 -1.6257 1.4253 10 1 2.1328 -2.5691 1.7715 11 6 2.1891 -0.4924 2.3859 12 7 2.6024 -0.8529 3.7487 13 6 2.2656 0.2142 4.7004 14 6 2.7097 -0.1971 6.1057 15 6 4.2218 -0.4301 6.1148 16 6 1.9925 -1.4864 6.5104 17 6 2.3595 0.9146 7.0969 18 6 2.7975 0.5099 8.4809 19 1 3.2773 -0.4449 8.6379 20 6 2.5849 1.3580 9.5469 21 7 2.0002 2.5205 9.3558 22 14 3.1271 0.8560 11.2625 23 1 2.7862 1.9345 12.2248 24 1 2.4309 -0.3955 11.6554 25 1 4.5947 0.6297 11.2714 26 1 -0.5400 0.9354 -0.0004 27 1 -0.5401 -0.9353 -0.0004 28 1 2.6154 1.4059 -0.9345 29 1 1.3592 2.1313 0.0970 30 1 2.7609 1.3219 0.8374 31 1 4.0904 -3.0663 -0.4564 32 1 5.2417 -1.6990 -0.5814 33 1 4.5787 -0.8038 1.5616 34 1 4.4791 -2.5692 1.8694 35 1 1.1114 -0.3311 2.3636 36 1 2.6996 0.4212 2.0810 37 1 3.5871 -1.0705 3.7824 38 1 1.1883 0.3800 4.6942 39 1 2.7763 1.1329 4.4119 40 1 4.5383 -0.7226 7.1160 41 1 4.4717 -1.2219 5.4086 42 1 4.7329 0.4885 5.8265 43 1 0.9152 -1.3204 6.5039 44 1 2.2423 -2.2782 5.8041 45 1 2.3085 -1.7792 7.5116 46 1 1.2823 1.0811 7.0905 47 1 2.8708 1.8330 6.8085 48 1 1.7183 2.7810 8.4651 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435747851.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:21 Heat of formation + Delta-G solvation = -49.207282 kcal Electronic energy + Delta-G solvation = -23127.889349 eV Core-core repulsion = 19989.347357 eV Total energy + Delta-G solvation = -3138.541992 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.30598 -37.70469 -35.66268 -34.63223 -32.67015 -31.38971 -29.06567 -27.64799 -26.60349 -26.39249 -25.91617 -23.95026 -22.90183 -22.19660 -20.83787 -18.70856 -18.06952 -16.90312 -16.38868 -16.25520 -15.59815 -15.40587 -14.73359 -14.32147 -14.13110 -13.74156 -13.63365 -13.32346 -13.22667 -12.95510 -12.80056 -12.51702 -12.28571 -11.87649 -11.70861 -11.56228 -11.55459 -11.26480 -11.15981 -10.96662 -10.91131 -10.80966 -10.73500 -10.54953 -10.10453 -10.02719 -9.88734 -9.78510 -9.28814 -9.17435 -8.39028 -8.27058 -8.10060 -6.28730 -3.96467 1.97149 3.46024 3.47899 3.66250 3.71426 4.14852 4.33547 4.46903 4.59019 4.74021 4.82969 4.89388 5.05076 5.11782 5.17624 5.42643 5.43722 5.46485 5.50723 5.58249 5.59722 5.65756 5.67406 5.72105 5.74951 5.85225 5.87969 5.93268 6.07042 6.17101 6.25728 6.39349 6.42102 6.54954 6.57597 6.69690 6.74146 6.75808 7.10858 7.12915 7.19375 7.32163 7.43259 7.57445 7.66112 8.30662 8.53595 8.95865 9.74193 11.11188 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.029609 B = 0.003343 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.435801 B = 8374.620435 C = 8826.478370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.114 4.114 3 C -0.120 4.120 4 C 0.116 3.884 5 H 0.074 0.926 6 O -0.369 6.369 7 C 0.046 3.954 8 C -0.152 4.152 9 C -0.111 4.111 10 H 0.093 0.907 11 C 0.060 3.940 12 N -0.687 5.687 13 C 0.070 3.930 14 C -0.051 4.051 15 C -0.128 4.128 16 C -0.115 4.115 17 C 0.021 3.979 18 C -0.588 4.588 19 H 0.052 0.948 20 C 0.012 3.988 21 N -0.917 5.917 22 Si 1.065 2.935 23 H -0.284 1.284 24 H -0.289 1.289 25 H -0.289 1.289 26 H 0.103 0.897 27 H 0.098 0.902 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.039 0.961 37 H 0.336 0.664 38 H 0.064 0.936 39 H 0.021 0.979 40 H 0.065 0.935 41 H 0.034 0.966 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.043 0.957 45 H 0.055 0.945 46 H 0.005 0.995 47 H 0.003 0.997 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.966 -8.257 -19.882 21.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.114 4.114 3 C -0.176 4.176 4 C 0.058 3.942 5 H 0.092 0.908 6 O -0.288 6.288 7 C -0.031 4.031 8 C -0.190 4.190 9 C -0.130 4.130 10 H 0.111 0.889 11 C -0.069 4.069 12 N -0.319 5.319 13 C -0.058 4.058 14 C -0.052 4.052 15 C -0.185 4.185 16 C -0.172 4.172 17 C -0.017 4.017 18 C -0.626 4.626 19 H 0.071 0.929 20 C -0.191 4.191 21 N -0.554 5.554 22 Si 0.894 3.106 23 H -0.209 1.209 24 H -0.215 1.215 25 H -0.216 1.216 26 H 0.121 0.879 27 H 0.116 0.884 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.057 0.943 37 H 0.155 0.845 38 H 0.083 0.917 39 H 0.039 0.961 40 H 0.084 0.916 41 H 0.052 0.948 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.062 0.938 45 H 0.074 0.926 46 H 0.023 0.977 47 H 0.021 0.979 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.450 -7.988 -18.361 20.076 hybrid contribution 0.530 0.054 -1.627 1.712 sum 1.980 -7.934 -19.988 21.596 Atomic orbital electron populations 1.23669 0.94814 1.02235 1.02170 1.21597 0.95055 0.95351 0.99395 1.21008 1.00264 0.93577 1.02750 1.21775 0.87736 0.94824 0.89846 0.90820 1.88901 1.22388 1.69424 1.48135 1.23545 0.92288 0.95215 0.92019 1.23231 0.95808 1.03117 0.96801 1.22566 0.95460 1.00766 0.94167 0.88878 1.22279 1.01279 0.95181 0.88162 1.60552 1.23523 1.43102 1.04717 1.22092 1.00208 0.90925 0.92604 1.20484 0.94695 0.97619 0.92391 1.21757 0.96017 0.99123 1.01614 1.21582 0.99004 0.96169 1.00445 1.19248 0.95624 0.92581 0.94237 1.22020 1.42293 1.05333 0.92945 0.92933 1.25784 0.95158 0.94085 1.04107 1.70776 1.37963 1.21056 1.25609 0.83595 0.76030 0.75532 0.75446 1.20926 1.21525 1.21576 0.87873 0.88383 0.91211 0.92179 0.91016 0.92168 0.89011 0.90600 0.89764 0.90649 0.94285 0.84456 0.91721 0.96105 0.91567 0.94753 0.94258 0.94312 0.93794 0.92581 0.97666 0.97924 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.84 13.39 29.02 0.39 -1.45 16 2 C -0.11 -1.19 3.39 -101.07 -0.34 -1.53 16 3 C -0.12 -1.23 9.37 36.00 0.34 -0.89 16 4 C 0.12 1.20 3.64 -27.31 -0.10 1.10 16 5 H 0.07 0.71 7.95 -51.93 -0.41 0.30 16 6 O -0.37 -4.12 10.72 -35.23 -0.38 -4.49 16 7 C 0.05 0.40 7.72 38.21 0.29 0.69 16 8 C -0.15 -1.38 5.95 -24.72 -0.15 -1.53 16 9 C -0.11 -1.14 3.29 -89.09 -0.29 -1.43 16 10 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 11 C 0.06 0.73 3.84 -3.82 -0.01 0.72 16 12 N -0.69 -9.80 5.71 -113.78 -0.65 -10.45 16 13 C 0.07 1.22 4.65 -3.82 -0.02 1.20 16 14 C -0.05 -1.03 0.60 -154.50 -0.09 -1.13 16 15 C -0.13 -2.39 7.89 37.16 0.29 -2.10 16 16 C -0.11 -2.25 8.07 37.15 0.30 -1.96 16 17 C 0.02 0.52 3.35 -27.88 -0.09 0.42 16 18 C -0.59 -16.28 7.65 -34.44 -0.26 -16.54 16 19 H 0.05 1.43 5.68 -52.49 -0.30 1.13 16 20 C 0.01 0.34 5.46 -17.82 -0.10 0.24 16 21 N -0.92 -28.24 13.65 55.43 0.76 -27.48 16 22 Si 1.07 25.39 29.90 -169.99 -5.08 20.31 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 26 H 0.10 0.91 7.84 -52.48 -0.41 0.50 16 27 H 0.10 0.85 7.96 -52.49 -0.42 0.43 16 28 H 0.07 0.71 8.11 -51.93 -0.42 0.29 16 29 H 0.06 0.56 7.79 -51.93 -0.40 0.16 16 30 H 0.07 0.78 5.41 -51.93 -0.28 0.49 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.74 7.80 -51.93 -0.41 0.33 16 34 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 35 H 0.08 0.98 6.90 -51.93 -0.36 0.62 16 36 H 0.04 0.49 4.90 -51.93 -0.25 0.24 16 37 H 0.34 4.59 6.06 -39.29 -0.24 4.35 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 1.36 6.62 -51.93 -0.34 1.01 16 41 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 42 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.04 0.77 7.60 -51.93 -0.39 0.37 16 45 H 0.06 1.18 6.62 -51.93 -0.34 0.84 16 46 H 0.01 0.14 8.01 -51.93 -0.42 -0.28 16 47 H 0.00 0.07 8.01 -51.93 -0.42 -0.35 16 48 H 0.27 8.22 7.22 -40.82 -0.29 7.93 16 LS Contribution 361.74 15.07 5.45 5.45 Total: -1.00 -30.19 361.74 -8.38 -38.57 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -8.63 Total: 2.26 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: 0.15 Total: -24.17 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.11 Total: -37.93 kcal Atomic # 8 Polarization: -4.12 SS G_CDS: -0.38 Total: -4.49 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -5.08 Total: 20.31 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.19 -8.38 -38.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435747851.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.634 kcal (2) G-P(sol) polarization free energy of solvation -30.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds