Wall clock time and date at job start Tue Mar 31 2020 05:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47090 * 2 1 4 4 H 1.09005 * 110.53797 * 52.38681 * 3 2 1 5 5 C 1.54267 * 110.48606 * 289.77674 * 3 2 1 6 6 C 1.53873 * 106.59683 * 217.71275 * 5 3 2 7 7 C 1.54267 * 106.60123 * 359.97438 * 6 5 3 8 8 C 1.54889 * 110.48491 * 175.00007 * 3 2 1 9 9 H 1.08993 * 110.75470 * 38.12546 * 8 3 2 10 10 C 1.50700 * 110.75695 * 274.93401 * 8 3 2 11 11 O 1.21283 * 119.99803 * 0.02562 * 10 8 3 12 12 N 1.34777 * 119.99675 * 180.27973 * 10 8 3 13 13 C 1.46497 * 119.99525 * 179.72583 * 12 10 8 14 14 C 1.52999 * 109.46992 * 179.97438 * 13 12 10 15 15 C 1.53006 * 109.47258 * 300.00045 * 14 13 12 16 16 C 1.52995 * 109.47338 * 60.00083 * 14 13 12 17 17 C 1.52998 * 109.47306 * 180.02562 * 14 13 12 18 18 C 1.50698 * 109.47245 * 180.02562 * 17 14 13 19 19 H 1.08001 * 120.00092 * 359.97438 * 18 17 14 20 20 C 1.37882 * 120.00154 * 180.02562 * 18 17 14 21 21 N 1.31511 * 119.99696 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99906 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47211 * 60.00000 * 22 20 18 24 24 H 1.48505 * 109.47031 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47222 * 299.99479 * 22 20 18 26 26 H 1.08997 * 109.47193 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46754 * 299.99718 * 1 2 3 28 28 H 1.08993 * 109.46992 * 59.99876 * 1 2 3 29 29 H 1.08999 * 109.47218 * 240.00086 * 2 1 3 30 30 H 1.09001 * 109.47249 * 119.99939 * 2 1 3 31 31 H 1.08998 * 110.03044 * 336.99449 * 5 3 2 32 32 H 1.08999 * 110.02874 * 98.37466 * 5 3 2 33 33 H 1.08997 * 110.03478 * 119.28707 * 6 5 3 34 34 H 1.08999 * 110.02890 * 240.66242 * 6 5 3 35 35 H 1.08996 * 110.48688 * 264.93809 * 7 6 5 36 36 H 1.09001 * 110.48409 * 142.28572 * 7 6 5 37 37 H 0.97000 * 119.99894 * 359.71837 * 12 10 8 38 38 H 1.08995 * 109.47421 * 299.99467 * 13 12 10 39 39 H 1.09001 * 109.47621 * 60.00103 * 13 12 10 40 40 H 1.08998 * 109.46912 * 59.99446 * 15 14 13 41 41 H 1.08994 * 109.47328 * 180.02562 * 15 14 13 42 42 H 1.09007 * 109.46697 * 300.00044 * 15 14 13 43 43 H 1.09003 * 109.47465 * 59.99650 * 16 14 13 44 44 H 1.09001 * 109.47749 * 180.02562 * 16 14 13 45 45 H 1.09003 * 109.46864 * 300.00020 * 16 14 13 46 46 H 1.08995 * 109.47215 * 299.99822 * 17 14 13 47 47 H 1.09001 * 109.47513 * 60.00266 * 17 14 13 48 48 H 0.97008 * 120.00088 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5801 2.0108 0.8086 5 6 1.7590 2.1146 -1.3599 6 6 2.9737 3.0073 -1.6683 7 6 3.9502 2.8472 -0.4849 8 6 3.5835 1.4718 0.1265 9 1 4.0332 0.6595 -0.4444 10 6 4.0023 1.4015 1.5724 11 8 3.1622 1.3330 2.4444 12 7 5.3104 1.4200 1.8967 13 6 5.7173 1.3578 3.3026 14 6 7.2442 1.3937 3.3936 15 6 7.8283 0.1970 2.6401 16 6 7.7619 2.6912 2.7698 17 6 7.6693 1.3280 4.8619 18 6 9.1732 1.3640 4.9515 19 1 9.7665 1.4270 4.0513 20 6 9.7918 1.3155 6.1828 21 7 9.0693 1.2384 7.2790 22 14 11.6559 1.3594 6.2939 23 1 12.1583 2.6194 5.6893 24 1 12.0686 1.2958 7.7190 25 1 12.2229 0.1985 5.5617 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6465 1.3564 -2.1348 32 1 0.8553 2.7208 -1.2970 33 1 3.4507 2.6825 -2.5930 34 1 2.6599 4.0475 -1.7559 35 1 3.7986 3.6423 0.2451 36 1 4.9812 2.8442 -0.8387 37 1 5.9822 1.4744 1.1991 38 1 5.3009 2.2101 3.8395 39 1 5.3489 0.4332 3.7470 40 1 7.5254 0.2433 1.5941 41 1 8.9160 0.2223 2.7053 42 1 7.4594 -0.7275 3.0846 43 1 7.3458 3.5438 3.3065 44 1 8.8497 2.7166 2.8342 45 1 7.4591 2.7375 1.7237 46 1 7.2532 2.1803 5.3990 47 1 7.3005 0.4034 5.3060 48 1 9.5045 1.2046 8.1454 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451782970.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:37 Heat of formation + Delta-G solvation = -88.792154 kcal Electronic energy + Delta-G solvation = -22898.867406 eV Core-core repulsion = 19758.608885 eV Total energy + Delta-G solvation = -3140.258521 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.16936 -38.06026 -36.77523 -33.73519 -33.16870 -32.05875 -29.60163 -27.73756 -27.08997 -26.51312 -26.03472 -23.36822 -22.63138 -21.48788 -19.95871 -19.65456 -18.30492 -17.04113 -16.32595 -15.67776 -15.53181 -14.94994 -14.57102 -14.49012 -14.23903 -13.76563 -13.49106 -13.23865 -13.05654 -13.02352 -12.75900 -12.25557 -12.07033 -12.03682 -11.93882 -11.44557 -11.34643 -11.13523 -11.00444 -10.87520 -10.84087 -10.67572 -10.63089 -10.55994 -10.53720 -10.39284 -10.26433 -9.87202 -9.62255 -9.13100 -8.92771 -8.66979 -8.35845 -5.99927 -4.01367 2.87821 3.31697 3.37180 3.38010 3.50178 4.29069 4.41552 4.44997 4.56399 4.96357 5.06317 5.12392 5.20717 5.23954 5.34275 5.35445 5.43890 5.46794 5.53940 5.56531 5.63458 5.68016 5.73159 5.75603 5.81649 5.90030 5.99497 6.04212 6.09369 6.17366 6.23159 6.24071 6.31437 6.36436 6.40126 6.59473 6.62747 6.79712 7.06476 7.07300 7.13393 7.63871 7.76549 7.81417 7.98732 8.40250 8.50787 9.03268 9.61673 11.11524 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.034312 B = 0.003196 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.841538 B = 8759.920004 C = 9181.013096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.072 4.072 4 H 0.088 0.912 5 C -0.120 4.120 6 C -0.123 4.123 7 C -0.113 4.113 8 C -0.113 4.113 9 H 0.098 0.902 10 C 0.514 3.486 11 O -0.544 6.544 12 N -0.721 5.721 13 C 0.128 3.872 14 C -0.073 4.073 15 C -0.127 4.127 16 C -0.126 4.126 17 C 0.037 3.963 18 C -0.512 4.512 19 H 0.059 0.941 20 C 0.056 3.944 21 N -0.895 5.895 22 Si 0.889 3.111 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.278 1.278 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.397 0.603 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.028 0.972 41 H 0.066 0.934 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.066 0.934 45 H 0.028 0.972 46 H 0.018 0.982 47 H 0.018 0.982 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.088 0.939 -19.019 22.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.090 4.090 4 H 0.106 0.894 5 C -0.158 4.158 6 C -0.160 4.160 7 C -0.151 4.151 8 C -0.135 4.135 9 H 0.116 0.884 10 C 0.299 3.701 11 O -0.422 6.422 12 N -0.373 5.373 13 C 0.005 3.995 14 C -0.073 4.073 15 C -0.184 4.184 16 C -0.183 4.183 17 C -0.001 4.001 18 C -0.550 4.550 19 H 0.077 0.923 20 C -0.145 4.145 21 N -0.534 5.534 22 Si 0.717 3.283 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.203 1.203 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.232 0.768 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.047 0.953 41 H 0.085 0.915 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.047 0.953 46 H 0.036 0.964 47 H 0.036 0.964 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.673 0.881 -18.176 22.175 hybrid contribution 1.462 0.016 -0.069 1.464 sum -11.211 0.896 -18.244 21.432 Atomic orbital electron populations 1.21745 0.95893 1.01318 1.01713 1.21538 0.95957 0.95903 1.01887 1.21868 0.92709 0.96778 0.97689 0.89409 1.22243 0.98000 0.98627 0.96928 1.22110 0.95902 1.00030 0.97993 1.22321 0.99567 0.95643 0.97576 1.22389 0.98036 0.99623 0.93436 0.88361 1.20466 0.82623 0.76190 0.90796 1.90681 1.51121 1.49701 1.50675 1.46231 1.06881 1.74257 1.09895 1.21602 0.95981 1.01623 0.80300 1.20901 0.90710 0.95062 1.00641 1.21757 1.02207 0.97627 0.96789 1.21752 1.02360 0.96973 0.97261 1.19079 0.96301 0.97426 0.87283 1.21150 0.91559 1.50214 0.92106 0.92323 1.25014 0.97924 0.95542 0.95997 1.69956 1.35188 1.50594 0.97666 0.86711 0.86142 0.78512 0.76929 1.20332 1.21388 1.20327 0.93047 0.92604 0.92942 0.92358 0.91534 0.91679 0.91780 0.91694 0.91699 0.91024 0.90997 0.76775 0.91956 0.91957 0.95266 0.91465 0.93407 0.93408 0.91480 0.95259 0.96388 0.96387 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.79 37.16 0.36 -0.98 16 2 C -0.12 -1.17 5.32 -26.73 -0.14 -1.31 16 3 C -0.07 -0.75 1.93 -88.96 -0.17 -0.92 16 4 H 0.09 1.12 7.44 -51.93 -0.39 0.73 16 5 C -0.12 -0.98 5.69 -25.61 -0.15 -1.13 16 6 C -0.12 -0.94 6.80 -25.61 -0.17 -1.12 16 7 C -0.11 -1.03 6.26 -25.06 -0.16 -1.19 16 8 C -0.11 -1.22 2.72 -89.76 -0.24 -1.46 16 9 H 0.10 0.92 8.06 -51.93 -0.42 0.50 16 10 C 0.51 7.56 7.13 -10.98 -0.08 7.48 16 11 O -0.54 -10.14 15.72 5.55 0.09 -10.06 16 12 N -0.72 -10.43 4.96 -60.30 -0.30 -10.73 16 13 C 0.13 2.28 4.56 -4.04 -0.02 2.26 16 14 C -0.07 -1.38 0.54 -154.51 -0.08 -1.46 16 15 C -0.13 -2.21 8.05 37.16 0.30 -1.92 16 16 C -0.13 -2.20 8.05 37.15 0.30 -1.90 16 17 C 0.04 0.90 4.04 -27.88 -0.11 0.79 16 18 C -0.51 -13.60 7.65 -34.44 -0.26 -13.86 16 19 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 20 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 21 N -0.89 -26.49 13.29 55.43 0.74 -25.76 16 22 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.41 7.62 -51.93 -0.40 0.01 16 29 H 0.06 0.51 7.95 -51.93 -0.41 0.10 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.48 7.71 -51.93 -0.40 0.08 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.74 8.04 -51.93 -0.42 0.32 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.40 4.87 6.16 -40.82 -0.25 4.62 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 41 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 45 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 46 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 368.60 15.07 5.55 5.55 Total: -1.00 -30.22 368.60 -8.68 -38.90 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -9.01 Total: 1.16 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: -0.73 Total: -15.25 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.44 Total: -36.48 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.22 -8.68 -38.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451782970.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.891 kcal (2) G-P(sol) polarization free energy of solvation -30.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds