Wall clock time and date at job start Tue Mar 31 2020 05:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47070 * 2 1 4 4 H 1.08997 * 110.01821 * 55.84508 * 3 2 1 5 5 C 1.54269 * 110.03139 * 294.45233 * 3 2 1 6 6 C 1.54890 * 104.19905 * 217.10584 * 5 3 2 7 7 C 1.54891 * 102.74417 * 37.94176 * 6 5 3 8 8 C 1.53872 * 110.03210 * 177.28980 * 3 2 1 9 9 H 1.09000 * 110.03601 * 238.61874 * 8 3 2 10 10 C 1.50702 * 110.03224 * 359.97438 * 8 3 2 11 11 O 1.21288 * 119.99669 * 86.78832 * 10 8 3 12 12 N 1.34770 * 120.00040 * 266.79165 * 10 8 3 13 13 C 1.46508 * 119.99853 * 180.02562 * 12 10 8 14 14 C 1.53000 * 109.46981 * 180.02562 * 13 12 10 15 15 C 1.53010 * 109.46928 * 299.99624 * 14 13 12 16 16 C 1.52995 * 109.47607 * 59.99428 * 14 13 12 17 17 C 1.52998 * 109.47150 * 180.02562 * 14 13 12 18 18 C 1.50696 * 109.47224 * 179.97438 * 17 14 13 19 19 H 1.08007 * 119.99962 * 359.97438 * 18 17 14 20 20 C 1.37876 * 120.00109 * 179.97438 * 18 17 14 21 21 N 1.31515 * 119.99678 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00033 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47134 * 59.99899 * 22 20 18 24 24 H 1.48501 * 109.47142 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47087 * 299.99678 * 22 20 18 26 26 H 1.08999 * 109.47422 * 59.99952 * 1 2 3 27 27 H 1.09001 * 109.46986 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46669 * 300.00378 * 1 2 3 29 29 H 1.08997 * 109.46670 * 240.00177 * 2 1 3 30 30 H 1.08997 * 109.46914 * 120.00003 * 2 1 3 31 31 H 1.09003 * 110.48587 * 98.43127 * 5 3 2 32 32 H 1.08999 * 110.48922 * 335.78981 * 5 3 2 33 33 H 1.08996 * 110.75733 * 156.25749 * 6 5 3 34 34 H 1.09004 * 110.75415 * 279.63299 * 6 5 3 35 35 H 1.09005 * 110.48466 * 80.73919 * 7 6 5 36 36 H 1.09005 * 110.48448 * 203.37665 * 7 6 5 37 37 H 0.96997 * 120.00189 * 0.02562 * 12 10 8 38 38 H 1.09000 * 109.46989 * 299.99670 * 13 12 10 39 39 H 1.09001 * 109.47302 * 59.99903 * 13 12 10 40 40 H 1.09002 * 109.46567 * 60.00104 * 15 14 13 41 41 H 1.08997 * 109.46934 * 180.02562 * 15 14 13 42 42 H 1.09001 * 109.47121 * 300.00243 * 15 14 13 43 43 H 1.09007 * 109.46658 * 60.00091 * 16 14 13 44 44 H 1.08997 * 109.47373 * 179.97438 * 16 14 13 45 45 H 1.09002 * 109.47402 * 300.00824 * 16 14 13 46 46 H 1.09000 * 109.46706 * 299.99310 * 17 14 13 47 47 H 1.09001 * 109.47416 * 59.99440 * 17 14 13 48 48 H 0.97002 * 119.99815 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6223 1.9859 0.8475 5 6 1.6505 2.1407 -1.3194 6 6 2.8672 3.0419 -1.6459 7 6 4.0681 2.1652 -1.2118 8 6 3.5772 1.4581 0.0684 9 1 3.9062 2.0088 0.9496 10 6 4.1062 0.0477 0.1149 11 8 4.3108 -0.5574 -0.9161 12 7 4.3519 -0.5410 1.3020 13 6 4.8667 -1.9119 1.3471 14 6 5.0563 -2.3377 2.8044 15 6 6.0520 -1.3963 3.4854 16 6 3.7129 -2.2731 3.5337 17 6 5.5946 -3.7691 2.8516 18 6 5.7819 -4.1883 4.2869 19 1 5.5415 -3.5022 5.0857 20 6 6.2602 -5.4477 4.5805 21 7 6.5524 -6.2833 3.6079 22 14 6.4931 -5.9670 6.3597 23 1 5.1897 -5.9040 7.0684 24 1 7.0142 -7.3568 6.4055 25 1 7.4600 -5.0533 7.0195 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.7542 2.7453 -1.1808 32 1 1.4975 1.4054 -2.1093 33 1 2.9125 3.2580 -2.7132 34 1 2.8320 3.9637 -1.0651 35 1 4.3055 1.4339 -1.9844 36 1 4.9361 2.7878 -0.9948 37 1 4.1879 -0.0571 2.1265 38 1 4.1572 -2.5826 0.8624 39 1 5.8237 -1.9580 0.8273 40 1 5.6689 -0.3764 3.4517 41 1 6.1874 -1.7000 4.5234 42 1 7.0091 -1.4423 2.9659 43 1 3.0036 -2.9438 3.0485 44 1 3.8479 -2.5769 4.5717 45 1 3.3298 -1.2532 3.5000 46 1 4.8856 -4.4400 2.3664 47 1 6.5518 -3.8147 2.3322 48 1 6.8885 -7.1695 3.8144 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451782971.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:39 Heat of formation + Delta-G solvation = -84.553068 kcal Electronic energy + Delta-G solvation = -23297.863075 eV Core-core repulsion = 20157.788375 eV Total energy + Delta-G solvation = -3140.074700 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.42931 -37.96493 -36.69932 -33.62234 -33.17622 -32.08414 -29.60075 -27.70341 -27.08502 -26.51431 -26.02201 -23.22980 -22.79496 -21.25690 -20.65749 -19.33562 -17.99720 -16.73339 -16.39312 -16.06963 -15.46467 -14.92551 -14.57447 -14.52403 -14.38920 -13.66506 -13.61130 -13.31824 -13.03279 -12.76903 -12.61617 -12.24288 -12.07104 -11.98818 -11.64504 -11.37439 -11.19255 -11.13281 -11.00560 -10.95379 -10.87499 -10.75837 -10.63871 -10.62159 -10.50747 -10.39590 -10.26583 -9.86730 -9.60437 -9.12749 -8.92711 -8.65338 -8.35820 -5.99934 -4.01371 2.88084 3.31721 3.37200 3.38056 3.50369 4.34251 4.43904 4.44952 4.56484 5.01050 5.07959 5.13599 5.22025 5.32351 5.35434 5.40584 5.44598 5.49923 5.53861 5.57941 5.63818 5.70284 5.74598 5.75455 5.90442 5.94196 6.00462 6.07272 6.16517 6.19794 6.23219 6.26244 6.28968 6.35945 6.40136 6.59678 6.62715 6.79886 7.06555 7.07334 7.13475 7.63813 7.76508 7.81718 7.98731 8.40277 8.51428 9.03264 9.61703 11.11508 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.031257 B = 0.003499 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.597187 B = 7999.818376 C = 8273.110264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.133 4.133 3 C -0.075 4.075 4 H 0.077 0.923 5 C -0.117 4.117 6 C -0.123 4.123 7 C -0.113 4.113 8 C -0.112 4.112 9 H 0.086 0.914 10 C 0.520 3.480 11 O -0.546 6.546 12 N -0.723 5.723 13 C 0.128 3.872 14 C -0.072 4.072 15 C -0.127 4.127 16 C -0.126 4.126 17 C 0.037 3.963 18 C -0.512 4.512 19 H 0.059 0.941 20 C 0.056 3.944 21 N -0.895 5.895 22 Si 0.889 3.111 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.278 1.278 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.397 0.603 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.028 0.972 41 H 0.066 0.934 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.066 0.934 45 H 0.028 0.972 46 H 0.018 0.982 47 H 0.018 0.982 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.482 18.447 -6.359 21.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C -0.094 4.094 4 H 0.095 0.905 5 C -0.154 4.154 6 C -0.161 4.161 7 C -0.151 4.151 8 C -0.134 4.134 9 H 0.105 0.895 10 C 0.306 3.694 11 O -0.424 6.424 12 N -0.374 5.374 13 C 0.005 3.995 14 C -0.073 4.073 15 C -0.184 4.184 16 C -0.183 4.183 17 C -0.001 4.001 18 C -0.550 4.550 19 H 0.077 0.923 20 C -0.145 4.145 21 N -0.534 5.534 22 Si 0.717 3.283 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.203 1.203 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.084 0.916 37 H 0.232 0.768 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.047 0.953 41 H 0.085 0.915 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.047 0.953 46 H 0.036 0.964 47 H 0.036 0.964 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.255 17.799 -7.121 21.288 hybrid contribution 0.159 -0.257 1.500 1.530 sum -9.096 17.542 -5.622 20.544 Atomic orbital electron populations 1.21749 0.95726 1.01643 1.01431 1.21859 0.96129 0.95710 1.03331 1.21700 0.92196 0.96830 0.98669 0.90461 1.22444 0.97670 0.98384 0.96948 1.22482 0.94745 0.97895 1.00982 1.22357 0.97604 0.98599 0.96519 1.22046 0.96772 0.93869 1.00723 0.89516 1.20366 0.77014 0.88311 0.83737 1.90668 1.52726 1.65626 1.33368 1.46305 1.66353 1.16764 1.08003 1.21597 0.98687 0.80869 0.98322 1.20897 0.95651 0.99667 0.91059 1.21759 0.98444 0.96110 1.02076 1.21753 0.96200 0.98487 1.01907 1.19078 0.96037 0.87603 0.97361 1.21148 1.43098 0.98648 0.92129 0.92330 1.25012 0.95757 0.96835 0.96863 1.69956 1.44837 1.07246 1.31365 0.86712 0.78432 0.77636 0.85527 1.20328 1.21393 1.20323 0.92797 0.92764 0.92964 0.90828 0.91384 0.91681 0.91176 0.91435 0.91614 0.89547 0.91596 0.76795 0.91980 0.91973 0.95270 0.91478 0.93409 0.93421 0.91489 0.95257 0.96397 0.96401 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.74 37.16 0.36 -1.07 16 2 C -0.13 -1.53 4.11 -26.73 -0.11 -1.64 16 3 C -0.08 -0.73 2.95 -89.50 -0.26 -1.00 16 4 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 5 C -0.12 -1.03 5.42 -25.07 -0.14 -1.17 16 6 C -0.12 -1.03 6.91 -24.74 -0.17 -1.20 16 7 C -0.11 -1.18 6.31 -25.07 -0.16 -1.34 16 8 C -0.11 -1.22 3.29 -90.66 -0.30 -1.52 16 9 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 10 C 0.52 7.58 4.71 -10.99 -0.05 7.53 16 11 O -0.55 -10.05 14.97 5.55 0.08 -9.97 16 12 N -0.72 -10.38 4.43 -60.29 -0.27 -10.64 16 13 C 0.13 2.27 4.57 -4.04 -0.02 2.25 16 14 C -0.07 -1.37 0.54 -154.51 -0.08 -1.45 16 15 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 16 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 17 C 0.04 0.90 4.04 -27.89 -0.11 0.79 16 18 C -0.51 -13.59 7.65 -34.44 -0.26 -13.85 16 19 H 0.06 1.49 5.68 -52.48 -0.30 1.19 16 20 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 21 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 22 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H 0.05 0.47 7.43 -51.93 -0.39 0.08 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 1.02 7.03 -51.93 -0.37 0.66 16 30 H 0.07 0.86 6.96 -51.93 -0.36 0.50 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.69 7.80 -51.93 -0.40 0.28 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.09 1.11 6.88 -51.93 -0.36 0.75 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.40 4.87 6.16 -40.82 -0.25 4.62 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 41 H 0.07 1.26 6.61 -51.93 -0.34 0.92 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 44 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 45 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 362.52 15.07 5.46 5.46 Total: -1.00 -30.04 362.52 -8.69 -38.73 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -8.88 Total: 2.00 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -0.80 Total: -16.01 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.47 Total: -36.38 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.08 Total: -9.97 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.04 -8.69 -38.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451782971.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.825 kcal (2) G-P(sol) polarization free energy of solvation -30.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds