Wall clock time and date at job start Tue Mar 31 2020 05:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47342 * 2 1 4 4 H 1.09005 * 110.01501 * 306.68002 * 3 2 1 5 5 C 1.54270 * 110.07443 * 68.09594 * 3 2 1 6 6 C 1.54882 * 104.19857 * 142.91651 * 5 3 2 7 7 C 1.54886 * 102.74861 * 322.06332 * 6 5 3 8 8 C 1.53872 * 110.03552 * 185.28955 * 3 2 1 9 9 H 1.08998 * 110.03188 * 121.33290 * 8 3 2 10 10 C 1.50700 * 110.03091 * 359.94962 * 8 3 2 11 11 O 1.21283 * 119.99902 * 273.65663 * 10 8 3 12 12 N 1.34773 * 120.00285 * 93.65644 * 10 8 3 13 13 C 1.46502 * 120.00480 * 179.97438 * 12 10 8 14 14 C 1.52998 * 109.47314 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47219 * 60.00003 * 14 13 12 16 16 C 1.53002 * 109.46941 * 300.00071 * 14 13 12 17 17 C 1.52993 * 109.47113 * 180.02562 * 14 13 12 18 18 C 1.50701 * 109.47224 * 179.97438 * 17 14 13 19 19 H 1.07999 * 119.99906 * 359.97438 * 18 17 14 20 20 C 1.37878 * 120.00317 * 180.02562 * 18 17 14 21 21 N 1.31512 * 120.00168 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 119.99639 * 0.27089 * 20 18 17 23 23 H 1.48494 * 109.47480 * 269.72829 * 22 20 18 24 24 H 1.48505 * 109.47208 * 29.73154 * 22 20 18 25 25 H 1.48505 * 109.46692 * 149.72932 * 22 20 18 26 26 H 1.08999 * 109.47366 * 60.00519 * 1 2 3 27 27 H 1.09000 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47274 * 299.99725 * 1 2 3 29 29 H 1.09001 * 109.46977 * 239.99553 * 2 1 3 30 30 H 1.09007 * 109.46935 * 119.99956 * 2 1 3 31 31 H 1.09004 * 110.48679 * 261.60040 * 5 3 2 32 32 H 1.09005 * 110.48320 * 24.24104 * 5 3 2 33 33 H 1.09010 * 110.75436 * 80.37093 * 6 5 3 34 34 H 1.08997 * 110.76078 * 203.56046 * 6 5 3 35 35 H 1.08998 * 110.48440 * 279.25959 * 7 6 5 36 36 H 1.09003 * 110.48866 * 156.61816 * 7 6 5 37 37 H 0.97003 * 119.99854 * 0.02562 * 12 10 8 38 38 H 1.08998 * 109.46572 * 60.00184 * 13 12 10 39 39 H 1.09004 * 109.46936 * 300.00295 * 13 12 10 40 40 H 1.09002 * 109.46889 * 180.02562 * 15 14 13 41 41 H 1.09005 * 109.47288 * 299.99897 * 15 14 13 42 42 H 1.08997 * 109.46946 * 59.99937 * 15 14 13 43 43 H 1.08998 * 109.47194 * 300.00442 * 16 14 13 44 44 H 1.09005 * 109.47269 * 60.00285 * 16 14 13 45 45 H 1.09002 * 109.47554 * 180.02562 * 16 14 13 46 46 H 1.09000 * 109.47556 * 59.99982 * 17 14 13 47 47 H 1.08997 * 109.46938 * 299.99993 * 17 14 13 48 48 H 0.97002 * 119.99810 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5876 1.9981 -0.8214 5 6 1.7069 2.1219 1.3444 6 6 2.9365 3.0187 1.6317 7 6 4.1177 2.1488 1.1348 8 6 3.5729 1.4596 -0.1333 9 1 3.8643 2.0229 -1.0198 10 6 4.0991 0.0502 -0.2215 11 8 4.3395 -0.5718 0.7916 12 7 4.3027 -0.5190 -1.4260 13 6 4.8148 -1.8889 -1.5118 14 6 4.9541 -2.2902 -2.9816 15 6 5.9263 -1.3377 -3.6805 16 6 3.5864 -2.2135 -3.6630 17 6 5.4883 -3.7211 -3.0711 18 6 5.6250 -4.1166 -4.5189 19 1 5.3571 -3.4175 -5.2972 20 6 6.0909 -5.3714 -4.8497 21 7 6.2106 -5.7164 -6.1131 22 14 6.5457 -6.5838 -3.5033 23 1 7.9800 -6.4214 -3.1547 24 1 5.7119 -6.3251 -2.3020 25 1 6.3066 -7.9687 -3.9830 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8901 31 1 0.8056 2.7280 1.2525 32 1 1.5873 1.3754 2.1297 33 1 2.8770 3.9487 1.0660 34 1 3.0252 3.2224 2.6988 35 1 4.3875 1.4067 1.8862 36 1 4.9759 2.7746 0.8900 37 1 4.1108 -0.0214 -2.2362 38 1 4.1224 -2.5674 -1.0135 39 1 5.7894 -1.9435 -1.0266 40 1 6.0251 -1.6234 -4.7277 41 1 5.5452 -0.3184 -3.6167 42 1 6.9006 -1.3924 -3.1950 43 1 2.8938 -2.8920 -3.1651 44 1 3.2053 -1.1942 -3.5993 45 1 3.6854 -2.4998 -4.7101 46 1 4.7955 -4.3995 -2.5734 47 1 6.4626 -3.7761 -2.5855 48 1 6.5388 -6.5990 -6.3459 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451782972.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:42 Heat of formation + Delta-G solvation = -81.028504 kcal Electronic energy + Delta-G solvation = -23349.822879 eV Core-core repulsion = 20209.901015 eV Total energy + Delta-G solvation = -3139.921864 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.49099 -38.05189 -36.79439 -33.67733 -33.21384 -32.10309 -29.67072 -27.82207 -27.70478 -26.56347 -26.08515 -23.11414 -22.61323 -21.20927 -20.71387 -19.39672 -17.98777 -16.93087 -16.72985 -16.15029 -15.55961 -15.01413 -14.65814 -14.51622 -14.04498 -13.78747 -13.72903 -13.35967 -13.31330 -12.73226 -12.71454 -12.34921 -12.26144 -12.08440 -11.68649 -11.41648 -11.25719 -11.20653 -11.12381 -11.01659 -10.98222 -10.79781 -10.66599 -10.62598 -10.55362 -10.48030 -9.96794 -9.80649 -9.71724 -9.35292 -8.99406 -8.74236 -8.53914 -6.04697 -4.01907 2.81222 3.31257 3.39181 3.42673 3.43526 4.30455 4.39991 4.45381 4.52035 4.96602 5.04197 5.09099 5.18460 5.27772 5.28325 5.37028 5.40175 5.42419 5.47089 5.52609 5.55376 5.63987 5.66975 5.71569 5.86901 5.90866 5.96888 6.03257 6.10422 6.12179 6.16055 6.18964 6.22016 6.30645 6.31887 6.50569 6.59078 6.72204 6.91204 7.01033 7.04776 7.20170 7.36590 7.71476 7.80580 8.43265 8.52749 8.99362 9.58147 11.08047 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.028209 B = 0.003698 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.367543 B = 7569.720995 C = 7734.426774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C -0.075 4.075 4 H 0.078 0.922 5 C -0.117 4.117 6 C -0.123 4.123 7 C -0.113 4.113 8 C -0.112 4.112 9 H 0.087 0.913 10 C 0.520 3.480 11 O -0.546 6.546 12 N -0.723 5.723 13 C 0.126 3.874 14 C -0.063 4.063 15 C -0.128 4.128 16 C -0.128 4.128 17 C -0.002 4.002 18 C -0.511 4.511 19 H 0.078 0.922 20 C 0.067 3.933 21 N -0.904 5.904 22 Si 0.874 3.126 23 H -0.278 1.278 24 H -0.265 1.265 25 H -0.289 1.289 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.398 0.602 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.031 0.969 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.031 0.969 45 H 0.072 0.928 46 H 0.018 0.982 47 H 0.013 0.987 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.900 17.484 12.026 23.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.170 4.170 3 C -0.094 4.094 4 H 0.096 0.904 5 C -0.154 4.154 6 C -0.161 4.161 7 C -0.151 4.151 8 C -0.134 4.134 9 H 0.106 0.894 10 C 0.307 3.693 11 O -0.424 6.424 12 N -0.374 5.374 13 C 0.003 3.997 14 C -0.063 4.063 15 C -0.186 4.186 16 C -0.185 4.185 17 C -0.040 4.040 18 C -0.549 4.549 19 H 0.096 0.904 20 C -0.134 4.134 21 N -0.543 5.543 22 Si 0.702 3.298 23 H -0.204 1.204 24 H -0.190 1.190 25 H -0.215 1.215 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.234 0.766 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.050 0.950 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.050 0.950 45 H 0.091 0.909 46 H 0.036 0.964 47 H 0.031 0.969 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.670 16.860 12.623 22.776 hybrid contribution 0.282 -0.612 0.079 0.678 sum -8.388 16.248 12.701 22.264 Atomic orbital electron populations 1.21748 0.95687 1.01652 1.01474 1.21860 0.96153 0.95710 1.03254 1.21707 0.92290 0.96881 0.98537 0.90384 1.22445 0.97723 0.98507 0.96775 1.22477 0.94750 0.97947 1.00925 1.22352 0.97582 0.98761 0.96362 1.22049 0.96756 0.93817 1.00780 0.89435 1.20378 0.76994 0.88448 0.83501 1.90663 1.51946 1.64632 1.35193 1.46275 1.66516 1.16663 1.07972 1.21606 0.98742 0.81306 0.98072 1.20680 0.96115 0.98413 0.91111 1.21772 0.98228 0.96100 1.02466 1.21767 0.95543 0.98679 1.02528 1.19587 0.95557 0.90411 0.98411 1.21081 1.43342 0.99780 0.90656 0.90409 1.24997 0.95217 0.98121 0.95089 1.69901 1.47156 1.20826 1.16432 0.86863 0.79272 0.80678 0.82988 1.20377 1.18997 1.21491 0.92891 0.92775 0.92814 0.91355 0.90944 0.91646 0.91204 0.91593 0.91429 0.89592 0.91566 0.76626 0.91992 0.92001 0.90914 0.95024 0.93446 0.93458 0.95011 0.90919 0.96415 0.96860 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.77 37.16 0.36 -1.02 16 2 C -0.13 -1.46 4.12 -26.73 -0.11 -1.57 16 3 C -0.08 -0.71 2.92 -89.50 -0.26 -0.97 16 4 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 5 C -0.12 -0.99 5.55 -25.07 -0.14 -1.13 16 6 C -0.12 -1.00 6.91 -24.74 -0.17 -1.17 16 7 C -0.11 -1.13 6.31 -25.07 -0.16 -1.29 16 8 C -0.11 -1.18 3.29 -90.65 -0.30 -1.47 16 9 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 10 C 0.52 7.28 4.68 -10.99 -0.05 7.23 16 11 O -0.55 -9.67 15.03 5.55 0.08 -9.59 16 12 N -0.72 -9.91 4.40 -60.29 -0.27 -10.17 16 13 C 0.13 2.10 4.56 -4.04 -0.02 2.08 16 14 C -0.06 -1.14 0.54 -154.51 -0.08 -1.22 16 15 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 16 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 17 C 0.00 -0.04 3.11 -27.89 -0.09 -0.13 16 18 C -0.51 -13.65 8.20 -34.44 -0.28 -13.93 16 19 H 0.08 2.20 5.92 -52.49 -0.31 1.89 16 20 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 21 N -0.90 -27.22 13.96 55.43 0.77 -26.45 16 22 Si 0.87 21.55 27.47 -169.99 -4.67 16.88 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.27 -6.35 6.53 56.52 0.37 -5.98 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.45 7.52 -51.93 -0.39 0.06 16 29 H 0.07 0.84 6.80 -51.93 -0.35 0.49 16 30 H 0.07 0.96 7.12 -51.93 -0.37 0.60 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.66 7.76 -51.93 -0.40 0.26 16 33 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.09 1.06 6.89 -51.93 -0.36 0.70 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.40 4.69 6.16 -40.82 -0.25 4.43 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.07 1.41 6.62 -51.93 -0.34 1.07 16 41 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 45 H 0.07 1.41 6.61 -51.93 -0.34 1.06 16 46 H 0.02 0.41 7.18 -51.93 -0.37 0.04 16 47 H 0.01 0.30 7.58 -51.93 -0.39 -0.09 16 48 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 359.05 15.07 5.41 5.41 Total: -1.00 -30.33 359.05 -8.31 -38.64 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -8.84 Total: 1.89 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: -0.80 Total: -16.61 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.51 Total: -36.62 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.08 Total: -9.59 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.33 -8.31 -38.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451782972.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.390 kcal (2) G-P(sol) polarization free energy of solvation -30.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds