Wall clock time and date at job start Tue Mar 31 2020 05:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47141 * 2 1 4 4 H 1.09006 * 110.43505 * 303.91664 * 3 2 1 5 5 C 1.54887 * 110.48457 * 66.45489 * 3 2 1 6 6 C 1.54890 * 102.91108 * 156.66033 * 5 3 2 7 7 C 1.54463 * 104.10368 * 322.30112 * 6 5 3 8 8 C 1.53877 * 106.68421 * 23.34437 * 7 6 5 9 9 H 1.08997 * 110.07404 * 240.85162 * 8 7 6 10 10 C 1.50704 * 110.03377 * 119.44132 * 8 7 6 11 11 O 1.21276 * 119.99918 * 242.83738 * 10 8 7 12 12 N 1.34770 * 119.99810 * 62.83294 * 10 8 7 13 13 C 1.46500 * 120.00207 * 180.02562 * 12 10 8 14 14 C 1.52998 * 109.47581 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.47292 * 300.00203 * 14 13 12 16 16 C 1.53006 * 109.46762 * 60.00136 * 14 13 12 17 17 C 1.53002 * 109.47264 * 179.97438 * 14 13 12 18 18 C 1.50692 * 109.46910 * 180.02562 * 17 14 13 19 19 H 1.07995 * 120.00459 * 359.97438 * 18 17 14 20 20 C 1.37879 * 120.00032 * 179.97438 * 18 17 14 21 21 N 1.31513 * 119.99822 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00283 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47121 * 90.00168 * 22 20 18 24 24 H 1.48504 * 109.47316 * 210.00227 * 22 20 18 25 25 H 1.48505 * 109.47504 * 330.00157 * 22 20 18 26 26 H 1.08995 * 109.47185 * 59.99611 * 1 2 3 27 27 H 1.08997 * 109.46929 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46829 * 299.99509 * 1 2 3 29 29 H 1.09007 * 109.46530 * 240.00285 * 2 1 3 30 30 H 1.08995 * 109.47185 * 120.00389 * 2 1 3 31 31 H 1.09002 * 110.75856 * 275.06943 * 5 3 2 32 32 H 1.09006 * 110.75640 * 38.25929 * 5 3 2 33 33 H 1.09003 * 110.48855 * 80.83451 * 6 5 3 34 34 H 1.09003 * 110.48748 * 203.47148 * 6 5 3 35 35 H 1.08999 * 109.85715 * 264.10233 * 7 6 5 36 36 H 1.09003 * 110.15968 * 142.74863 * 7 6 5 37 37 H 0.97007 * 120.00053 * 359.97438 * 12 10 8 38 38 H 1.09000 * 109.46814 * 300.00399 * 13 12 10 39 39 H 1.09004 * 109.47048 * 59.99743 * 13 12 10 40 40 H 1.09003 * 109.46816 * 59.99961 * 15 14 13 41 41 H 1.08994 * 109.47105 * 179.97438 * 15 14 13 42 42 H 1.08997 * 109.47018 * 300.00157 * 15 14 13 43 43 H 1.09000 * 109.47044 * 59.99720 * 16 14 13 44 44 H 1.08997 * 109.46867 * 179.97438 * 16 14 13 45 45 H 1.09008 * 109.46797 * 300.00003 * 16 14 13 46 46 H 1.09000 * 109.47080 * 300.00609 * 17 14 13 47 47 H 1.08997 * 109.46702 * 60.00054 * 17 14 13 48 48 H 0.97001 * 120.00332 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6295 1.9913 -0.8477 5 6 1.6743 2.1467 1.3301 6 6 2.7251 3.2810 1.4216 7 6 4.0178 2.6420 0.8679 8 6 3.5820 1.4730 -0.0328 9 1 3.9822 0.5350 0.3520 10 6 4.0641 1.6998 -1.4425 11 8 3.2631 1.8268 -2.3442 12 7 5.3853 1.7618 -1.7011 13 6 5.8540 1.9829 -3.0713 14 6 7.3836 2.0114 -3.0889 15 6 7.8830 3.1443 -2.1901 16 6 7.9244 0.6758 -2.5742 17 6 7.8730 2.2416 -4.5201 18 6 9.3796 2.2690 -4.5375 19 1 9.9327 2.1360 -3.6195 20 6 10.0519 2.4640 -5.7253 21 7 9.3784 2.6255 -6.8433 22 14 11.9194 2.4987 -5.7468 23 1 12.4376 1.1245 -5.9664 24 1 12.3856 3.3846 -6.8437 25 1 12.4200 3.0146 -4.4473 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 0.6655 2.5573 1.2852 32 1 1.7731 1.4599 2.1708 33 1 2.4260 4.1288 0.8051 34 1 2.8625 3.5912 2.4575 35 1 4.6295 2.2717 1.6906 36 1 4.5786 3.3731 0.2856 37 1 6.0260 1.6607 -0.9797 38 1 5.4978 1.1760 -3.7118 39 1 5.4690 2.9345 -3.4379 40 1 7.5343 2.9797 -1.1705 41 1 8.9727 3.1643 -2.2023 42 1 7.4977 4.0957 -2.5567 43 1 7.5686 -0.1313 -3.2145 44 1 9.0141 0.6959 -2.5871 45 1 7.5757 0.5113 -1.5546 46 1 7.5172 1.4342 -5.1601 47 1 7.4877 3.1929 -4.8872 48 1 9.8513 2.7631 -7.6789 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451782973.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:44 Heat of formation + Delta-G solvation = -88.190778 kcal Electronic energy + Delta-G solvation = -22919.462766 eV Core-core repulsion = 19779.230323 eV Total energy + Delta-G solvation = -3140.232443 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.23248 -38.02415 -36.76029 -33.75965 -33.17216 -32.06546 -29.60493 -27.72091 -27.08944 -26.51664 -26.01705 -23.39792 -22.64371 -21.37214 -20.24375 -19.53934 -18.26631 -16.92386 -16.31001 -15.71543 -15.67800 -14.76617 -14.61631 -14.56524 -14.38911 -13.66661 -13.47188 -13.23248 -13.14998 -13.03360 -12.75732 -12.19725 -12.13573 -12.06820 -11.74753 -11.42881 -11.20655 -11.12049 -11.01791 -10.91205 -10.85582 -10.74388 -10.66881 -10.64168 -10.51570 -10.39904 -10.25308 -9.87770 -9.61714 -9.13450 -8.92213 -8.67754 -8.36325 -6.00294 -4.01657 2.87882 3.30395 3.37386 3.38877 3.48840 4.29125 4.42276 4.44712 4.60910 4.95880 5.05168 5.11066 5.17374 5.25406 5.35171 5.42327 5.45322 5.46567 5.53779 5.57051 5.63149 5.68991 5.71426 5.75283 5.80219 5.92057 5.97649 6.02649 6.08945 6.17007 6.18574 6.23096 6.30922 6.38811 6.39819 6.59275 6.62493 6.79358 7.06188 7.06985 7.13055 7.63796 7.76204 7.80709 7.98506 8.39983 8.49963 9.03217 9.61473 11.11197 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.035162 B = 0.003181 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.123287 B = 8800.099131 C = 9129.548802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.079 4.079 4 H 0.094 0.906 5 C -0.119 4.119 6 C -0.124 4.124 7 C -0.117 4.117 8 C -0.112 4.112 9 H 0.096 0.904 10 C 0.512 3.488 11 O -0.545 6.545 12 N -0.722 5.722 13 C 0.128 3.872 14 C -0.073 4.073 15 C -0.126 4.126 16 C -0.127 4.127 17 C 0.036 3.964 18 C -0.511 4.511 19 H 0.059 0.941 20 C 0.056 3.944 21 N -0.895 5.895 22 Si 0.889 3.111 23 H -0.282 1.282 24 H -0.287 1.287 25 H -0.275 1.275 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.397 0.603 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.028 0.972 41 H 0.066 0.934 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.066 0.934 45 H 0.028 0.972 46 H 0.018 0.982 47 H 0.018 0.982 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.000 -2.561 18.291 22.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.097 4.097 4 H 0.113 0.887 5 C -0.156 4.156 6 C -0.161 4.161 7 C -0.155 4.155 8 C -0.133 4.133 9 H 0.114 0.886 10 C 0.298 3.702 11 O -0.422 6.422 12 N -0.373 5.373 13 C 0.005 3.995 14 C -0.073 4.073 15 C -0.184 4.184 16 C -0.184 4.184 17 C -0.001 4.001 18 C -0.549 4.549 19 H 0.077 0.923 20 C -0.145 4.145 21 N -0.534 5.534 22 Si 0.717 3.283 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.199 1.199 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.233 0.767 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.047 0.953 41 H 0.085 0.915 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.047 0.953 46 H 0.036 0.964 47 H 0.036 0.964 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.534 -2.435 17.429 22.200 hybrid contribution 1.495 -0.056 0.097 1.499 sum -12.039 -2.490 17.526 21.408 Atomic orbital electron populations 1.21752 0.95824 1.01321 1.01842 1.21533 0.96018 0.95963 1.01745 1.21972 0.92305 0.96676 0.98768 0.88743 1.22574 0.98716 0.97167 0.97175 1.22373 0.94825 0.98192 1.00749 1.22167 0.98200 0.96585 0.98518 1.22033 0.97754 1.00524 0.93012 0.88624 1.20540 0.82529 0.76413 0.90731 1.90666 1.54315 1.50031 1.47212 1.46223 1.06650 1.72999 1.11446 1.21608 0.95352 1.01141 0.81408 1.20902 0.90757 0.95187 1.00456 1.21753 1.02338 0.97943 0.96327 1.21759 1.02235 0.96637 0.97759 1.19084 0.96013 0.97203 0.87824 1.21182 0.91423 1.48889 0.93445 0.92267 1.25016 0.98104 0.95572 0.95819 1.69965 1.35279 1.49612 0.98539 0.86650 0.86172 0.77855 0.77635 1.20776 1.21331 1.19947 0.92597 0.93039 0.92795 0.91859 0.92273 0.91487 0.91499 0.91503 0.91500 0.91030 0.91149 0.76744 0.91946 0.91959 0.95267 0.91456 0.93406 0.93402 0.91455 0.95267 0.96384 0.96378 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.76 37.16 0.36 -0.92 16 2 C -0.12 -1.11 5.30 -26.73 -0.14 -1.25 16 3 C -0.08 -0.83 2.22 -88.96 -0.20 -1.02 16 4 H 0.09 1.25 6.88 -51.93 -0.36 0.89 16 5 C -0.12 -0.99 5.50 -24.74 -0.14 -1.12 16 6 C -0.12 -1.05 6.85 -24.97 -0.17 -1.22 16 7 C -0.12 -1.07 6.41 -25.51 -0.16 -1.24 16 8 C -0.11 -1.21 2.87 -90.65 -0.26 -1.47 16 9 H 0.10 0.90 7.84 -51.93 -0.41 0.49 16 10 C 0.51 7.59 6.91 -10.99 -0.08 7.52 16 11 O -0.54 -10.23 15.40 5.56 0.09 -10.15 16 12 N -0.72 -10.48 4.85 -60.29 -0.29 -10.77 16 13 C 0.13 2.28 4.56 -4.04 -0.02 2.27 16 14 C -0.07 -1.38 0.54 -154.50 -0.08 -1.46 16 15 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 16 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 17 C 0.04 0.89 4.04 -27.89 -0.11 0.78 16 18 C -0.51 -13.57 7.65 -34.44 -0.26 -13.83 16 19 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16 20 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 21 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 22 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.41 7.38 -51.93 -0.38 0.02 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 31 H 0.07 0.53 8.01 -51.93 -0.42 0.11 16 32 H 0.07 0.49 8.02 -51.93 -0.42 0.08 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.72 7.62 -51.93 -0.40 0.33 16 37 H 0.40 4.90 6.16 -40.82 -0.25 4.65 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 41 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 45 H 0.03 0.41 6.86 -51.92 -0.36 0.06 16 46 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 367.22 15.07 5.53 5.53 Total: -1.00 -30.30 367.22 -8.67 -38.97 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -8.95 Total: 1.33 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -0.76 Total: -15.34 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.44 Total: -36.52 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.30 -8.67 -38.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451782973.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.221 kcal (2) G-P(sol) polarization free energy of solvation -30.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds