Wall clock time and date at job start Tue Mar 31 2020 05:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42905 * 113.99830 * 2 1 4 4 H 1.09002 * 112.88445 * 21.83635 * 3 2 1 5 5 C 1.53956 * 113.65892 * 250.49571 * 3 2 1 6 6 C 1.53950 * 87.29543 * 270.16751 * 5 3 2 7 7 H 1.08999 * 113.66620 * 89.82853 * 6 5 3 8 8 N 1.46902 * 113.66264 * 220.80027 * 6 5 3 9 9 C 1.46906 * 110.99573 * 255.49247 * 8 6 5 10 10 C 1.52998 * 109.47020 * 179.97438 * 9 8 6 11 11 C 1.53000 * 109.47381 * 300.00339 * 10 9 8 12 12 C 1.53010 * 109.47013 * 60.00056 * 10 9 8 13 13 C 1.52996 * 109.47077 * 179.97438 * 10 9 8 14 14 C 1.50699 * 109.47047 * 180.02562 * 13 10 9 15 15 H 1.07999 * 120.00136 * 0.02562 * 14 13 10 16 16 C 1.37876 * 120.00116 * 180.02562 * 14 13 10 17 17 N 1.31512 * 120.00112 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00300 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47367 * 89.99714 * 18 16 14 20 20 H 1.48498 * 109.47367 * 209.99933 * 18 16 14 21 21 H 1.48501 * 109.47165 * 330.00245 * 18 16 14 22 22 C 1.52910 * 113.74859 * 153.26798 * 3 2 1 23 23 C 1.52906 * 121.13412 * 215.30377 * 22 3 2 24 24 C 1.53944 * 86.78379 * 100.81693 * 23 22 3 25 25 C 1.52906 * 121.13245 * 323.85994 * 22 3 2 26 26 H 1.08998 * 109.46955 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47433 * 300.00141 * 1 2 3 28 28 H 1.09001 * 109.47587 * 60.00415 * 1 2 3 29 29 H 1.09004 * 113.57560 * 155.56528 * 5 3 2 30 30 H 1.09000 * 113.65175 * 24.77963 * 5 3 2 31 31 H 1.00896 * 111.00219 * 19.44887 * 8 6 5 32 32 H 1.09002 * 109.46991 * 299.99841 * 9 8 6 33 33 H 1.09000 * 109.47202 * 60.00133 * 9 8 6 34 34 H 1.09002 * 109.47185 * 59.99218 * 11 10 9 35 35 H 1.08994 * 109.47063 * 180.02562 * 11 10 9 36 36 H 1.09008 * 109.46699 * 300.00074 * 11 10 9 37 37 H 1.08992 * 109.46866 * 59.99807 * 12 10 9 38 38 H 1.09000 * 109.46687 * 179.97438 * 12 10 9 39 39 H 1.09002 * 109.47213 * 300.00043 * 12 10 9 40 40 H 1.08993 * 109.47277 * 299.99937 * 13 10 9 41 41 H 1.09000 * 109.47041 * 60.00238 * 13 10 9 42 42 H 0.96998 * 120.00461 * 180.02562 * 17 16 14 43 43 H 1.09004 * 113.65897 * 215.29247 * 23 22 3 44 44 H 1.09003 * 113.66232 * 346.34007 * 23 22 3 45 45 H 1.09000 * 113.57971 * 270.12666 * 24 23 22 46 46 H 1.09000 * 113.65038 * 139.34397 * 24 23 22 47 47 H 1.08998 * 113.66598 * 13.65699 * 25 22 3 48 48 H 1.09008 * 113.66036 * 144.61413 * 25 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3310 2.0719 0.3735 5 6 2.6916 1.6784 -1.3292 6 6 3.9825 1.0673 -0.7548 7 1 4.0957 0.0043 -0.9676 8 7 5.1907 1.8437 -1.0638 9 6 5.9792 1.1929 -2.1187 10 6 7.2261 2.0292 -2.4128 11 6 6.8062 3.4250 -2.8777 12 6 8.0720 2.1475 -1.1433 13 6 8.0477 1.3510 -3.5110 14 6 9.2762 2.1744 -3.8002 15 1 9.4536 3.0896 -3.2550 16 6 10.1738 1.7594 -4.7609 17 7 9.9577 0.6451 -5.4253 18 14 11.6963 2.7803 -5.1200 19 1 12.8091 2.3351 -4.2432 20 1 12.0861 2.6047 -6.5421 21 1 11.4043 4.2129 -4.8601 22 6 3.4026 1.3597 0.6296 23 6 3.8583 2.5755 1.4371 24 6 3.5431 1.7484 2.6967 25 6 3.7591 0.4904 1.8359 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 2.7561 2.7531 -1.4996 30 1 2.2980 1.1368 -2.1894 31 1 4.9561 2.7910 -1.3200 32 1 6.2780 0.1983 -1.7876 33 1 5.3768 1.1090 -3.0232 34 1 6.2210 3.9079 -2.0950 35 1 7.6945 4.0206 -3.0876 36 1 6.2035 3.3407 -3.7821 37 1 8.3711 1.1531 -0.8121 38 1 8.9606 2.7429 -1.3530 39 1 7.4869 2.6304 -0.3605 40 1 8.3469 0.3568 -3.1794 41 1 7.4453 1.2664 -4.4155 42 1 10.5894 0.3529 -6.1009 43 1 4.9170 2.8070 1.3193 44 1 3.2163 3.4478 1.3145 45 1 2.5184 1.8647 3.0495 46 1 4.2797 1.8645 3.4917 47 1 3.0379 -0.3029 2.0320 48 1 4.7894 0.1345 1.8295 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453242010.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:16 Heat of formation + Delta-G solvation = -16.218700 kcal Electronic energy + Delta-G solvation = -23214.909701 eV Core-core repulsion = 20077.798202 eV Total energy + Delta-G solvation = -3137.111500 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.81763 -37.45524 -37.08045 -34.82415 -32.64955 -31.30089 -27.11519 -26.82706 -26.28916 -25.68903 -25.43345 -24.55984 -23.43735 -22.00011 -20.87485 -18.49770 -17.68253 -16.63678 -16.21336 -15.85384 -15.73274 -15.14524 -14.75064 -14.60015 -14.27075 -13.94212 -13.28241 -13.03952 -12.91874 -12.64651 -12.42668 -12.28962 -11.97023 -11.93455 -11.78860 -11.67009 -11.47920 -11.04678 -10.96794 -10.86004 -10.73745 -10.47669 -10.40670 -10.35171 -10.16612 -10.07381 -9.87554 -9.63455 -9.47501 -8.95513 -8.76583 -8.28684 -7.91376 -5.93161 -3.93175 3.35261 3.38994 3.41722 3.44370 4.40420 4.45840 4.51752 4.53189 4.69254 4.80969 4.86341 5.02751 5.11641 5.13280 5.21760 5.39982 5.42565 5.43215 5.45302 5.66849 5.73975 5.79781 5.86528 5.88458 5.96357 5.98697 6.01632 6.04722 6.17232 6.34021 6.37438 6.43637 6.54223 6.57259 6.70546 6.84239 6.87149 7.05020 7.25589 7.30002 7.31411 7.50556 7.73624 7.79311 7.90707 8.07523 8.52056 9.12398 9.69450 11.18537 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.030450 B = 0.003438 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.316516 B = 8141.544099 C = 8555.518902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.364 6.364 3 C 0.088 3.912 4 H 0.070 0.930 5 C -0.189 4.189 6 C 0.091 3.909 7 H 0.098 0.902 8 N -0.672 5.672 9 C 0.071 3.929 10 C -0.059 4.059 11 C -0.128 4.128 12 C -0.115 4.115 13 C 0.034 3.966 14 C -0.506 4.506 15 H 0.059 0.941 16 C 0.054 3.946 17 N -0.898 5.898 18 Si 0.887 3.113 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.275 1.275 22 C -0.094 4.094 23 C -0.101 4.101 24 C -0.143 4.143 25 C -0.117 4.117 26 H 0.085 0.915 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.339 0.661 32 H 0.065 0.935 33 H 0.022 0.978 34 H 0.032 0.968 35 H 0.063 0.937 36 H 0.039 0.961 37 H 0.038 0.962 38 H 0.053 0.947 39 H 0.042 0.958 40 H 0.014 0.986 41 H 0.012 0.988 42 H 0.258 0.742 43 H 0.102 0.898 44 H 0.058 0.942 45 H 0.071 0.929 46 H 0.065 0.935 47 H 0.067 0.933 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.293 2.207 13.308 22.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.282 6.282 3 C 0.029 3.971 4 H 0.088 0.912 5 C -0.228 4.228 6 C -0.020 4.020 7 H 0.116 0.884 8 N -0.302 5.302 9 C -0.058 4.058 10 C -0.059 4.059 11 C -0.185 4.185 12 C -0.172 4.172 13 C -0.004 4.004 14 C -0.544 4.544 15 H 0.077 0.923 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.715 3.285 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.200 1.200 22 C -0.096 4.096 23 C -0.139 4.139 24 C -0.181 4.181 25 C -0.154 4.154 26 H 0.104 0.896 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.159 0.841 32 H 0.083 0.917 33 H 0.040 0.960 34 H 0.051 0.949 35 H 0.082 0.918 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.033 0.967 41 H 0.030 0.970 42 H 0.068 0.932 43 H 0.120 0.880 44 H 0.077 0.923 45 H 0.089 0.911 46 H 0.084 0.916 47 H 0.085 0.915 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.719 1.657 13.667 22.438 hybrid contribution 0.029 0.796 -1.254 1.486 sum -17.690 2.453 12.413 21.749 Atomic orbital electron populations 1.22786 0.81229 1.02662 0.99819 1.87884 1.19299 1.26479 1.94520 1.22666 0.93325 0.84769 0.96328 0.91180 1.24217 0.99579 1.01292 0.97752 1.22717 0.87070 0.98126 0.94113 0.88399 1.60417 1.19401 1.05327 1.45012 1.22116 0.94381 0.98121 0.91159 1.20630 0.93438 0.94589 0.97245 1.21760 1.00856 0.97352 0.98559 1.21586 0.98992 1.00636 0.95978 1.19116 0.93906 0.95456 0.91897 1.21246 1.05978 1.07875 1.19321 0.92317 1.25017 0.98113 0.95144 0.96353 1.69967 1.36620 1.22223 1.24974 0.86672 0.83723 0.80708 0.77355 1.20794 1.21426 1.19963 1.22849 0.93546 0.98971 0.94198 1.22504 1.02599 0.94713 0.94052 1.22855 1.00941 0.97400 0.96878 1.22550 1.01888 0.96286 0.94714 0.89638 0.94162 0.94128 0.89452 0.91072 0.84144 0.91679 0.95961 0.94871 0.91802 0.94187 0.94234 0.92825 0.93929 0.96723 0.96975 0.93196 0.87992 0.92298 0.91083 0.91641 0.91460 0.89673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.86 101.05 1.10 1.35 16 2 O -0.36 -4.16 10.21 -35.23 -0.36 -4.52 16 3 C 0.09 0.94 4.14 -26.28 -0.11 0.83 16 4 H 0.07 0.66 7.90 -51.93 -0.41 0.25 16 5 C -0.19 -2.16 7.55 -25.75 -0.19 -2.35 16 6 C 0.09 1.18 3.99 -67.26 -0.27 0.92 16 7 H 0.10 1.44 7.90 -51.93 -0.41 1.03 16 8 N -0.67 -9.63 5.02 -106.24 -0.53 -10.16 16 9 C 0.07 1.24 4.51 -3.82 -0.02 1.22 16 10 C -0.06 -1.17 0.60 -154.51 -0.09 -1.26 16 11 C -0.13 -2.38 7.89 37.16 0.29 -2.08 16 12 C -0.11 -2.23 8.06 37.16 0.30 -1.93 16 13 C 0.03 0.86 4.04 -27.89 -0.11 0.75 16 14 C -0.51 -13.94 7.65 -34.44 -0.26 -14.20 16 15 H 0.06 1.57 5.68 -52.49 -0.30 1.28 16 16 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 17 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 18 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 22 C -0.09 -1.07 0.98 -154.71 -0.15 -1.22 16 23 C -0.10 -1.05 7.44 -26.29 -0.20 -1.25 16 24 C -0.14 -1.39 8.08 -25.75 -0.21 -1.60 16 25 C -0.12 -1.32 7.71 -26.29 -0.20 -1.52 16 26 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.09 0.93 7.82 -51.93 -0.41 0.52 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.34 4.66 6.26 -39.29 -0.25 4.41 16 32 H 0.06 1.20 8.13 -51.93 -0.42 0.78 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 35 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 36 H 0.04 0.74 8.14 -51.92 -0.42 0.32 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.05 1.11 6.61 -51.93 -0.34 0.77 16 39 H 0.04 0.73 7.60 -51.93 -0.39 0.34 16 40 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.10 1.19 7.77 -51.93 -0.40 0.79 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.07 0.77 7.83 -51.93 -0.41 0.36 16 48 H 0.08 1.03 8.14 -51.92 -0.42 0.61 16 LS Contribution 369.20 15.07 5.56 5.56 Total: -1.00 -29.35 369.20 -8.89 -38.24 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -9.06 Total: 1.42 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: -0.22 Total: -20.91 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.20 Total: -36.53 kcal Atomic # 8 Polarization: -4.16 SS G_CDS: -0.36 Total: -4.52 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.35 -8.89 -38.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453242010.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.022 kcal (2) G-P(sol) polarization free energy of solvation -29.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds