Wall clock time and date at job start Tue Mar 31 2020 05:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 113.99967 * 2 1 4 4 H 1.08998 * 112.88418 * 20.33659 * 3 2 1 5 5 C 1.53943 * 113.66363 * 248.98875 * 3 2 1 6 6 C 1.53948 * 87.29850 * 220.79622 * 5 3 2 7 7 H 1.09007 * 113.66509 * 270.17507 * 6 5 3 8 8 N 1.46901 * 113.66633 * 139.20497 * 6 5 3 9 9 C 1.46902 * 110.99672 * 104.50829 * 8 6 5 10 10 C 1.53008 * 109.46663 * 179.97438 * 9 8 6 11 11 C 1.52990 * 109.47216 * 299.99882 * 10 9 8 12 12 C 1.52999 * 109.46843 * 59.99985 * 10 9 8 13 13 C 1.52993 * 109.46630 * 179.97438 * 10 9 8 14 14 C 1.50703 * 109.46954 * 180.02562 * 13 10 9 15 15 H 1.08002 * 119.99734 * 0.02562 * 14 13 10 16 16 C 1.37879 * 120.00182 * 180.02562 * 14 13 10 17 17 N 1.31516 * 120.00137 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99849 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47410 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47404 * 119.99669 * 18 16 14 21 21 H 1.48499 * 109.46923 * 239.99553 * 18 16 14 22 22 C 1.52913 * 113.66182 * 151.67709 * 3 2 1 23 23 C 1.52913 * 121.13471 * 13.65727 * 22 3 2 24 24 C 1.53948 * 86.78087 * 209.37675 * 23 22 3 25 25 C 1.52900 * 121.13772 * 265.09453 * 22 3 2 26 26 H 1.09000 * 109.46965 * 299.99799 * 1 2 3 27 27 H 1.09000 * 109.47508 * 59.99543 * 1 2 3 28 28 H 1.08998 * 109.47297 * 179.97438 * 1 2 3 29 29 H 1.09002 * 113.58131 * 335.39981 * 5 3 2 30 30 H 1.09003 * 113.58198 * 106.11585 * 5 3 2 31 31 H 1.00900 * 110.99909 * 228.45738 * 8 6 5 32 32 H 1.08996 * 109.46894 * 299.99436 * 9 8 6 33 33 H 1.08993 * 109.47404 * 60.00179 * 9 8 6 34 34 H 1.09005 * 109.47296 * 60.00034 * 11 10 9 35 35 H 1.08998 * 109.47315 * 179.97438 * 11 10 9 36 36 H 1.08998 * 109.47712 * 300.00099 * 11 10 9 37 37 H 1.09008 * 109.47108 * 59.99928 * 12 10 9 38 38 H 1.08998 * 109.47193 * 179.97438 * 12 10 9 39 39 H 1.09001 * 109.47483 * 299.99952 * 12 10 9 40 40 H 1.08995 * 109.47757 * 299.99953 * 13 10 9 41 41 H 1.09000 * 109.47432 * 60.00594 * 13 10 9 42 42 H 0.96997 * 119.99860 * 180.02562 * 17 16 14 43 43 H 1.08994 * 113.65978 * 323.85217 * 23 22 3 44 44 H 1.09001 * 113.66317 * 94.90657 * 23 22 3 45 45 H 1.09002 * 113.58013 * 270.13401 * 24 23 22 46 46 H 1.08999 * 113.57937 * 139.33378 * 24 23 22 47 47 H 1.09002 * 113.66417 * 265.08483 * 25 22 3 48 48 H 1.08998 * 113.66577 * 36.05428 * 25 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3224 2.0757 0.3490 5 6 2.7233 1.6643 -1.3162 6 6 3.8272 2.3082 -0.4578 7 1 3.6521 3.3614 -0.2378 8 7 5.1859 2.0457 -0.9506 9 6 5.7436 3.2319 -1.6140 10 6 7.1564 2.9206 -2.1121 11 6 8.0423 2.5362 -0.9255 12 6 7.1023 1.7586 -3.1058 13 6 7.7369 4.1558 -2.8035 14 6 9.1283 3.8492 -3.2947 15 1 9.5555 2.8709 -3.1304 16 6 9.8558 4.8174 -3.9537 17 7 9.3353 6.0084 -4.1542 18 14 11.5801 4.4370 -4.5631 19 1 11.9304 3.0365 -4.2151 20 1 11.6335 4.6093 -6.0371 21 1 12.5474 5.3629 -3.9212 22 6 3.3861 1.3647 0.6645 23 6 4.1682 0.0887 0.9782 24 6 4.7918 0.8634 2.1533 25 6 3.5380 1.7566 2.1346 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 3.0610 0.7949 -1.8803 30 1 2.1737 2.3786 -1.9293 31 1 5.7875 1.7330 -0.2033 32 1 5.1122 3.5060 -2.4591 33 1 5.7825 4.0596 -0.9059 34 1 7.6285 1.6560 -0.4332 35 1 9.0487 2.3140 -1.2804 36 1 8.0809 3.3640 -0.2175 37 1 6.4711 2.0325 -3.9513 38 1 8.1087 1.5371 -3.4610 39 1 6.6885 0.8785 -2.6136 40 1 7.1057 4.4294 -3.6489 41 1 7.7754 4.9840 -2.0959 42 1 9.8470 6.6894 -4.6181 43 1 3.5385 -0.7450 1.2888 44 1 4.8859 -0.1857 0.2051 45 1 5.7078 1.3922 1.8899 46 1 4.8912 0.2705 3.0626 47 1 3.7524 2.8146 2.2854 48 1 2.7304 1.3930 2.7700 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453242017.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:22 Heat of formation + Delta-G solvation = -17.903956 kcal Electronic energy + Delta-G solvation = -23287.419867 eV Core-core repulsion = 20150.235289 eV Total energy + Delta-G solvation = -3137.184578 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.85714 -37.48680 -37.01543 -34.68936 -32.79024 -31.47862 -27.16055 -26.81464 -26.30644 -25.91725 -25.30342 -24.58538 -23.25809 -21.94545 -20.79433 -18.51943 -17.53004 -16.83888 -16.28916 -16.13539 -15.81735 -15.01924 -14.94003 -14.54156 -14.22956 -13.81703 -13.45470 -13.05311 -12.83695 -12.60812 -12.44526 -12.14728 -12.08106 -11.97474 -11.73769 -11.58142 -11.40086 -11.15842 -10.95210 -10.85846 -10.72845 -10.49840 -10.46561 -10.26541 -10.26052 -10.12675 -10.01227 -9.65207 -9.33881 -8.97811 -8.78113 -8.30000 -8.03753 -5.94398 -3.94215 3.33733 3.41593 3.45265 3.59043 4.27374 4.41888 4.49871 4.55393 4.70406 4.72256 4.82198 4.85207 5.04779 5.18794 5.26735 5.36298 5.41570 5.44083 5.49293 5.60733 5.72313 5.73343 5.79842 5.82614 5.85767 5.97549 6.03252 6.13434 6.21675 6.30711 6.32875 6.39783 6.46047 6.55428 6.70397 6.83174 6.86603 7.13639 7.24235 7.28783 7.30337 7.47952 7.71274 7.75157 7.88720 8.06332 8.50989 9.11506 9.68559 11.17354 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.032076 B = 0.003443 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.721330 B = 8131.359065 C = 8436.020561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.370 6.370 3 C 0.072 3.928 4 H 0.083 0.917 5 C -0.137 4.137 6 C 0.086 3.914 7 H 0.071 0.929 8 N -0.668 5.668 9 C 0.069 3.931 10 C -0.058 4.058 11 C -0.129 4.129 12 C -0.115 4.115 13 C 0.034 3.966 14 C -0.505 4.505 15 H 0.060 0.940 16 C 0.054 3.946 17 N -0.898 5.898 18 Si 0.887 3.113 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.286 1.286 22 C -0.101 4.101 23 C -0.102 4.102 24 C -0.143 4.143 25 C -0.131 4.131 26 H 0.037 0.963 27 H 0.040 0.960 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.340 0.660 32 H 0.066 0.934 33 H 0.022 0.978 34 H 0.032 0.968 35 H 0.064 0.936 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.053 0.947 39 H 0.042 0.958 40 H 0.015 0.985 41 H 0.012 0.988 42 H 0.258 0.742 43 H 0.086 0.914 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.066 0.934 47 H 0.065 0.935 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.975 -10.056 11.644 22.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.288 6.288 3 C 0.014 3.986 4 H 0.101 0.899 5 C -0.176 4.176 6 C -0.025 4.025 7 H 0.088 0.912 8 N -0.301 5.301 9 C -0.060 4.060 10 C -0.059 4.059 11 C -0.186 4.186 12 C -0.173 4.173 13 C -0.004 4.004 14 C -0.543 4.543 15 H 0.078 0.922 16 C -0.147 4.147 17 N -0.538 5.538 18 Si 0.715 3.285 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.212 1.212 22 C -0.102 4.102 23 C -0.139 4.139 24 C -0.180 4.180 25 C -0.168 4.168 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.101 0.899 29 H 0.116 0.884 30 H 0.082 0.918 31 H 0.162 0.838 32 H 0.084 0.916 33 H 0.040 0.960 34 H 0.051 0.949 35 H 0.083 0.917 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.033 0.967 41 H 0.030 0.970 42 H 0.067 0.933 43 H 0.105 0.895 44 H 0.098 0.902 45 H 0.097 0.903 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.026 -10.344 10.985 22.011 hybrid contribution 0.848 0.944 0.325 1.310 sum -15.178 -9.400 11.310 21.134 Atomic orbital electron populations 1.22751 0.81779 1.02431 0.99689 1.87943 1.18965 1.27361 1.94580 1.23413 0.93100 0.84810 0.97322 0.89925 1.23524 0.96251 1.01401 0.96410 1.22456 0.90684 0.96144 0.93228 0.91159 1.60676 1.01838 1.34674 1.32952 1.22166 0.96824 0.89556 0.97408 1.20623 0.91398 0.98501 0.95343 1.21765 1.00873 0.98598 0.97360 1.21593 1.00991 0.96821 0.97866 1.19122 0.95459 0.90896 0.94901 1.21287 0.99638 0.98035 1.35367 0.92232 1.25020 0.97993 0.95208 0.96436 1.69979 1.37296 1.03749 1.42783 0.86613 0.85041 0.78325 0.78490 1.19761 1.21171 1.21228 1.23098 0.94938 0.98403 0.93737 1.22389 0.98459 0.95369 0.97726 1.22883 0.97364 0.98718 0.99073 1.22803 0.98490 0.99834 0.95685 0.94393 0.94167 0.89945 0.88358 0.91802 0.83817 0.91587 0.95979 0.94892 0.91707 0.94163 0.94203 0.92764 0.93866 0.96706 0.96982 0.93258 0.89548 0.90178 0.90267 0.91548 0.91604 0.90113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.86 101.05 1.10 1.34 16 2 O -0.37 -4.19 10.02 -35.23 -0.35 -4.55 16 3 C 0.07 0.78 4.17 -26.28 -0.11 0.67 16 4 H 0.08 0.78 7.88 -51.93 -0.41 0.37 16 5 C -0.14 -1.67 7.72 -25.75 -0.20 -1.87 16 6 C 0.09 1.08 3.99 -67.16 -0.27 0.81 16 7 H 0.07 0.90 7.90 -51.92 -0.41 0.49 16 8 N -0.67 -9.73 5.23 -106.14 -0.56 -10.29 16 9 C 0.07 1.20 4.51 -3.82 -0.02 1.18 16 10 C -0.06 -1.17 0.60 -154.51 -0.09 -1.26 16 11 C -0.13 -2.40 7.89 37.15 0.29 -2.11 16 12 C -0.12 -2.26 8.06 37.16 0.30 -1.96 16 13 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 14 C -0.50 -13.88 7.65 -34.44 -0.26 -14.14 16 15 H 0.06 1.60 5.68 -52.49 -0.30 1.30 16 16 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 17 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 18 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 C -0.10 -1.12 1.03 -154.61 -0.16 -1.28 16 23 C -0.10 -1.13 6.87 -26.28 -0.18 -1.32 16 24 C -0.14 -1.44 7.80 -25.75 -0.20 -1.64 16 25 C -0.13 -1.29 7.85 -26.28 -0.21 -1.50 16 26 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.34 4.82 4.54 -39.29 -0.18 4.64 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.02 0.39 8.13 -51.93 -0.42 -0.03 16 34 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 35 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16 36 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.04 0.79 8.14 -51.92 -0.42 0.37 16 38 H 0.05 1.14 6.61 -51.93 -0.34 0.79 16 39 H 0.04 0.76 7.60 -51.93 -0.39 0.37 16 40 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.09 0.96 7.84 -51.93 -0.41 0.56 16 44 H 0.08 0.99 7.29 -51.93 -0.38 0.61 16 45 H 0.08 0.84 7.29 -51.93 -0.38 0.46 16 46 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 366.02 15.07 5.52 5.52 Total: -1.00 -29.33 366.02 -8.83 -38.16 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -8.94 Total: 1.61 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: -0.22 Total: -20.89 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.18 Total: -36.55 kcal Atomic # 8 Polarization: -4.19 SS G_CDS: -0.35 Total: -4.55 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.33 -8.83 -38.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453242017.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.254 kcal (2) G-P(sol) polarization free energy of solvation -29.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds