Wall clock time and date at job start Tue Mar 31 2020 05:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 113.99967 * 2 1 4 4 H 1.08998 * 112.88418 * 20.33659 * 3 2 1 5 5 C 1.53943 * 113.66363 * 248.98875 * 3 2 1 6 6 C 1.53948 * 87.29850 * 220.79622 * 5 3 2 7 7 H 1.09007 * 113.66509 * 270.17507 * 6 5 3 8 8 N 1.46901 * 113.66633 * 139.20497 * 6 5 3 9 9 C 1.46902 * 110.99672 * 104.50829 * 8 6 5 10 10 C 1.53008 * 109.46663 * 179.97438 * 9 8 6 11 11 C 1.52990 * 109.47216 * 299.99882 * 10 9 8 12 12 C 1.52999 * 109.46843 * 59.99985 * 10 9 8 13 13 C 1.52993 * 109.46630 * 179.97438 * 10 9 8 14 14 C 1.50703 * 109.46954 * 180.02562 * 13 10 9 15 15 H 1.08002 * 119.99734 * 0.02562 * 14 13 10 16 16 C 1.37879 * 120.00182 * 180.02562 * 14 13 10 17 17 N 1.31516 * 120.00137 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99849 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47410 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47404 * 119.99669 * 18 16 14 21 21 H 1.48499 * 109.46923 * 239.99553 * 18 16 14 22 22 C 1.52913 * 113.66182 * 151.67709 * 3 2 1 23 23 C 1.52913 * 121.13471 * 13.65727 * 22 3 2 24 24 C 1.53948 * 86.78087 * 209.37675 * 23 22 3 25 25 C 1.52900 * 121.13772 * 265.09453 * 22 3 2 26 26 H 1.09000 * 109.46965 * 299.99799 * 1 2 3 27 27 H 1.09000 * 109.47508 * 59.99543 * 1 2 3 28 28 H 1.08998 * 109.47297 * 179.97438 * 1 2 3 29 29 H 1.09002 * 113.58131 * 335.39981 * 5 3 2 30 30 H 1.09003 * 113.58198 * 106.11585 * 5 3 2 31 31 H 1.00900 * 110.99909 * 228.45738 * 8 6 5 32 32 H 1.08996 * 109.46894 * 299.99436 * 9 8 6 33 33 H 1.08993 * 109.47404 * 60.00179 * 9 8 6 34 34 H 1.09005 * 109.47296 * 60.00034 * 11 10 9 35 35 H 1.08998 * 109.47315 * 179.97438 * 11 10 9 36 36 H 1.08998 * 109.47712 * 300.00099 * 11 10 9 37 37 H 1.09008 * 109.47108 * 59.99928 * 12 10 9 38 38 H 1.08998 * 109.47193 * 179.97438 * 12 10 9 39 39 H 1.09001 * 109.47483 * 299.99952 * 12 10 9 40 40 H 1.08995 * 109.47757 * 299.99953 * 13 10 9 41 41 H 1.09000 * 109.47432 * 60.00594 * 13 10 9 42 42 H 0.96997 * 119.99860 * 180.02562 * 17 16 14 43 43 H 1.08994 * 113.65978 * 323.85217 * 23 22 3 44 44 H 1.09001 * 113.66317 * 94.90657 * 23 22 3 45 45 H 1.09002 * 113.58013 * 270.13401 * 24 23 22 46 46 H 1.08999 * 113.57937 * 139.33378 * 24 23 22 47 47 H 1.09002 * 113.66417 * 265.08483 * 25 22 3 48 48 H 1.08998 * 113.66577 * 36.05428 * 25 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3224 2.0757 0.3490 5 6 2.7233 1.6643 -1.3162 6 6 3.8272 2.3082 -0.4578 7 1 3.6521 3.3614 -0.2378 8 7 5.1859 2.0457 -0.9506 9 6 5.7436 3.2319 -1.6140 10 6 7.1564 2.9206 -2.1121 11 6 8.0423 2.5362 -0.9255 12 6 7.1023 1.7586 -3.1058 13 6 7.7369 4.1558 -2.8035 14 6 9.1283 3.8492 -3.2947 15 1 9.5555 2.8709 -3.1304 16 6 9.8558 4.8174 -3.9537 17 7 9.3353 6.0084 -4.1542 18 14 11.5801 4.4370 -4.5631 19 1 11.9304 3.0365 -4.2151 20 1 11.6335 4.6093 -6.0371 21 1 12.5474 5.3629 -3.9212 22 6 3.3861 1.3647 0.6645 23 6 4.1682 0.0887 0.9782 24 6 4.7918 0.8634 2.1533 25 6 3.5380 1.7566 2.1346 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 3.0610 0.7949 -1.8803 30 1 2.1737 2.3786 -1.9293 31 1 5.7875 1.7330 -0.2033 32 1 5.1122 3.5060 -2.4591 33 1 5.7825 4.0596 -0.9059 34 1 7.6285 1.6560 -0.4332 35 1 9.0487 2.3140 -1.2804 36 1 8.0809 3.3640 -0.2175 37 1 6.4711 2.0325 -3.9513 38 1 8.1087 1.5371 -3.4610 39 1 6.6885 0.8785 -2.6136 40 1 7.1057 4.4294 -3.6489 41 1 7.7754 4.9840 -2.0959 42 1 9.8470 6.6894 -4.6181 43 1 3.5385 -0.7450 1.2888 44 1 4.8859 -0.1857 0.2051 45 1 5.7078 1.3922 1.8899 46 1 4.8912 0.2705 3.0626 47 1 3.7524 2.8146 2.2854 48 1 2.7304 1.3930 2.7700 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453242017.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:21 Heat of formation + Delta-G solvation = -34.084631 kcal Electronic energy + Delta-G solvation = -23288.121513 eV Core-core repulsion = 20150.235289 eV Total energy + Delta-G solvation = -3137.886225 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.76201 -38.93384 -37.93993 -35.80806 -34.60860 -32.96422 -28.98062 -27.89517 -27.73802 -27.00336 -26.48181 -25.45908 -24.84023 -23.30696 -21.69424 -19.82058 -18.83505 -18.33003 -17.71811 -17.05293 -16.78731 -16.53440 -15.94982 -15.79339 -15.49934 -15.21230 -14.86669 -14.44845 -14.07534 -13.90897 -13.74740 -13.55898 -13.26204 -13.04957 -12.89486 -12.73982 -12.68163 -12.57216 -12.42574 -12.29715 -12.23312 -12.10382 -11.94998 -11.83757 -11.39941 -11.29504 -11.13954 -11.02542 -10.82994 -10.63976 -10.50790 -10.15622 -9.25638 -8.13785 -6.20542 1.40059 1.41213 1.53400 2.43898 2.78800 3.20232 3.34495 3.48616 3.65601 3.72618 3.88268 3.91860 4.00356 4.16618 4.24062 4.31440 4.38914 4.51436 4.56431 4.59319 4.61906 4.75836 4.79013 4.82500 4.88340 4.92155 4.95548 4.96601 5.07941 5.08735 5.11629 5.18415 5.22112 5.23888 5.31587 5.50316 5.52578 5.54491 5.58637 5.60419 5.66943 5.87966 5.93455 6.18229 6.37996 6.38984 6.54941 6.94782 7.46769 8.98813 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.032076 B = 0.003443 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.721330 B = 8131.359065 C = 8436.020561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.390 6.390 3 C 0.080 3.920 4 H 0.100 0.900 5 C -0.140 4.140 6 C 0.079 3.921 7 H 0.072 0.928 8 N -0.665 5.665 9 C 0.083 3.917 10 C -0.055 4.055 11 C -0.121 4.121 12 C -0.106 4.106 13 C 0.041 3.959 14 C -0.512 4.512 15 H 0.066 0.934 16 C -0.005 4.005 17 N -0.938 5.938 18 Si 0.956 3.044 19 H -0.261 1.261 20 H -0.283 1.283 21 H -0.282 1.282 22 C -0.100 4.100 23 C -0.102 4.102 24 C -0.140 4.140 25 C -0.124 4.124 26 H 0.051 0.949 27 H 0.043 0.957 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.345 0.655 32 H 0.054 0.946 33 H 0.018 0.982 34 H 0.064 0.936 35 H 0.047 0.953 36 H 0.037 0.963 37 H 0.029 0.971 38 H 0.038 0.962 39 H 0.065 0.935 40 H -0.017 1.017 41 H -0.016 1.016 42 H 0.259 0.741 43 H 0.087 0.913 44 H 0.066 0.934 45 H 0.073 0.927 46 H 0.079 0.921 47 H 0.066 0.934 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.441 -11.537 13.017 23.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.308 6.308 3 C 0.021 3.979 4 H 0.117 0.883 5 C -0.178 4.178 6 C -0.031 4.031 7 H 0.089 0.911 8 N -0.298 5.298 9 C -0.046 4.046 10 C -0.055 4.055 11 C -0.178 4.178 12 C -0.163 4.163 13 C 0.003 3.997 14 C -0.550 4.550 15 H 0.084 0.916 16 C -0.201 4.201 17 N -0.580 5.580 18 Si 0.781 3.219 19 H -0.185 1.185 20 H -0.209 1.209 21 H -0.208 1.208 22 C -0.101 4.101 23 C -0.139 4.139 24 C -0.177 4.177 25 C -0.161 4.161 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.112 0.888 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.166 0.834 32 H 0.073 0.927 33 H 0.036 0.964 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.048 0.952 38 H 0.057 0.943 39 H 0.084 0.916 40 H 0.001 0.999 41 H 0.002 0.998 42 H 0.068 0.932 43 H 0.106 0.894 44 H 0.084 0.916 45 H 0.092 0.908 46 H 0.097 0.903 47 H 0.085 0.915 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.502 -11.847 12.368 23.783 hybrid contribution 0.911 1.391 -0.111 1.667 sum -15.591 -10.456 12.257 22.419 Atomic orbital electron populations 1.22939 0.80164 1.03565 1.00539 1.87912 1.20807 1.27493 1.94598 1.23351 0.93294 0.85264 0.95944 0.88272 1.23494 0.96486 1.00750 0.97111 1.22529 0.89381 0.96719 0.94454 0.91061 1.60605 1.02800 1.32966 1.33399 1.21855 0.95027 0.90565 0.97188 1.20492 0.93109 0.96164 0.95783 1.21668 0.99660 0.99854 0.96650 1.21489 0.99932 0.97346 0.97519 1.18996 0.94725 0.92472 0.93473 1.21653 1.00464 0.98159 1.34760 0.91613 1.25918 1.02326 0.95059 0.96841 1.70116 1.39094 1.04858 1.43903 0.85528 0.79885 0.78660 0.77790 1.18459 1.20892 1.20783 1.23048 0.94969 0.97975 0.94094 1.22363 0.98287 0.95463 0.97833 1.22866 0.97156 0.98579 0.99116 1.22795 0.98715 0.99929 0.94683 0.93038 0.93786 0.88783 0.90106 0.91469 0.83372 0.92711 0.96411 0.91688 0.93397 0.94373 0.95210 0.94299 0.91569 0.99856 0.99754 0.93187 0.89448 0.91566 0.90842 0.90273 0.91506 0.88862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.86 113.37 1.23 1.57 16 2 O -0.39 -8.07 10.02 -148.98 -1.49 -9.56 16 3 C 0.08 1.57 4.17 30.88 0.13 1.70 16 4 H 0.10 1.62 7.88 -2.39 -0.02 1.60 16 5 C -0.14 -3.26 7.72 31.23 0.24 -3.02 16 6 C 0.08 1.91 3.99 45.27 0.18 2.09 16 7 H 0.07 1.73 7.90 -2.38 -0.02 1.72 16 8 N -0.66 -18.65 5.23 -489.71 -2.56 -21.21 16 9 C 0.08 2.88 4.51 86.31 0.39 3.27 16 10 C -0.06 -2.22 0.60 -52.18 -0.03 -2.25 16 11 C -0.12 -4.41 7.89 71.98 0.57 -3.84 16 12 C -0.11 -4.11 8.06 71.98 0.58 -3.53 16 13 C 0.04 2.14 4.04 29.85 0.12 2.26 16 14 C -0.51 -28.59 7.65 25.60 0.20 -28.39 16 15 H 0.07 3.53 5.68 -2.91 -0.02 3.51 16 16 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 17 N -0.94 -57.76 13.29 21.45 0.28 -57.48 16 18 Si 0.96 44.82 29.54 68.60 2.03 46.84 16 19 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 20 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 21 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 22 C -0.10 -2.02 1.03 -52.25 -0.05 -2.08 16 23 C -0.10 -2.08 6.87 30.89 0.21 -1.87 16 24 C -0.14 -2.49 7.80 31.23 0.24 -2.24 16 25 C -0.12 -2.13 7.85 30.88 0.24 -1.89 16 26 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.34 9.16 4.54 -89.69 -0.41 8.76 16 32 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.02 0.63 8.13 -2.39 -0.02 0.61 16 34 H 0.06 1.94 6.57 -2.38 -0.02 1.92 16 35 H 0.05 1.90 6.62 -2.39 -0.02 1.88 16 36 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.04 1.61 6.61 -2.39 -0.02 1.59 16 39 H 0.07 2.25 7.60 -2.39 -0.02 2.24 16 40 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 41 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 42 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 43 H 0.09 1.78 7.84 -2.39 -0.02 1.76 16 44 H 0.07 1.53 7.29 -2.39 -0.02 1.51 16 45 H 0.07 1.40 7.29 -2.39 -0.02 1.38 16 46 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -63.54 366.02 3.46 -60.08 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 0.50 Total: 19.35 kcal Atomic # 6 Polarization: -42.74 SS G_CDS: 4.71 Total: -38.03 kcal Atomic # 7 Polarization: -76.41 SS G_CDS: -2.28 Total: -78.68 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: -1.49 Total: -9.56 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -63.54 3.46 -60.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453242017.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.996 kcal (2) G-P(sol) polarization free energy of solvation -63.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds