Wall clock time and date at job start Tue Mar 31 2020 05:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47480 * 2 1 4 4 C 1.50697 * 109.47383 * 240.00000 * 2 1 3 5 5 H 1.08007 * 119.99774 * 240.00609 * 4 2 1 6 6 C 1.37877 * 120.00099 * 59.99852 * 4 2 1 7 7 N 1.31512 * 120.00001 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99922 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46865 * 90.00388 * 8 6 4 10 10 H 1.48501 * 109.46952 * 210.00187 * 8 6 4 11 11 H 1.48496 * 109.47098 * 330.00361 * 8 6 4 12 12 C 1.53004 * 109.46983 * 120.00041 * 2 1 3 13 13 N 1.46506 * 109.46934 * 299.99685 * 12 2 1 14 14 C 1.34776 * 119.99834 * 180.02562 * 13 12 2 15 15 O 1.21276 * 119.99871 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.99541 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47258 * 60.00317 * 16 14 13 18 18 C 1.52998 * 109.47324 * 299.99671 * 16 14 13 19 19 C 1.53004 * 109.46641 * 179.97438 * 16 14 13 20 20 C 1.54270 * 110.48468 * 180.02562 * 19 16 14 21 21 C 1.53869 * 106.63967 * 217.73631 * 20 19 16 22 22 C 1.54268 * 106.60115 * 359.97438 * 21 20 19 23 23 C 1.54895 * 104.19476 * 23.60777 * 22 21 20 24 24 H 1.09000 * 109.46976 * 300.00808 * 1 2 3 25 25 H 1.09004 * 109.46779 * 59.99969 * 1 2 3 26 26 H 1.08996 * 109.47232 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47751 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47140 * 299.99810 * 3 2 1 29 29 H 1.09004 * 109.47211 * 59.99434 * 3 2 1 30 30 H 0.96994 * 119.99814 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.46754 * 180.02562 * 12 2 1 32 32 H 1.08996 * 109.47361 * 59.99804 * 12 2 1 33 33 H 0.97001 * 119.99699 * 0.02562 * 13 12 2 34 34 H 1.08999 * 109.47149 * 179.97438 * 17 16 14 35 35 H 1.09002 * 109.47271 * 299.99553 * 17 16 14 36 36 H 1.08999 * 109.47311 * 59.99165 * 17 16 14 37 37 H 1.08996 * 109.47059 * 300.00375 * 18 16 14 38 38 H 1.09002 * 109.46784 * 60.00704 * 18 16 14 39 39 H 1.08999 * 109.46968 * 180.02562 * 18 16 14 40 40 H 1.08997 * 110.53944 * 302.61276 * 19 16 14 41 41 H 1.09002 * 110.03399 * 98.42629 * 20 19 16 42 42 H 1.08995 * 110.02943 * 337.04529 * 20 19 16 43 43 H 1.08999 * 110.03405 * 119.26051 * 21 20 19 44 44 H 1.09001 * 110.03705 * 240.64196 * 21 20 19 45 45 H 1.08997 * 110.48788 * 142.28685 * 22 21 20 46 46 H 1.09001 * 110.48482 * 264.93365 * 22 21 20 47 47 H 1.09001 * 110.75082 * 80.37254 * 23 22 21 48 48 H 1.08991 * 110.75596 * 203.55944 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3428 -2.1617 -4.4118 10 1 2.4868 -0.1414 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 6 2.0399 -0.7213 1.2493 13 7 1.5516 -0.0306 2.4455 14 6 1.8776 -0.4907 3.6696 15 8 2.5748 -1.4768 3.7808 16 6 1.3748 0.2195 4.8999 17 6 -0.1552 0.2183 4.9000 18 6 1.8838 1.6623 4.8998 19 6 1.8849 -0.5018 6.1492 20 6 1.3826 0.2065 7.4244 21 6 2.5322 0.1436 8.4452 22 6 3.6938 -0.6014 7.7555 23 6 3.4284 -0.4012 6.2426 24 1 -0.3633 0.5140 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 0.7096 1.1617 -3.4844 31 1 3.1299 -0.7209 1.2495 32 1 1.6766 -1.7489 1.2493 33 1 0.9937 0.7579 2.3564 34 1 -0.5188 0.7316 5.7902 35 1 -0.5190 0.7318 4.0100 36 1 -0.5178 -0.8096 4.9001 37 1 2.9738 1.6630 4.8998 38 1 1.5200 2.1758 4.0099 39 1 1.5205 2.1758 5.7900 40 1 1.5700 -1.5452 6.1437 41 1 0.5060 -0.3087 7.8171 42 1 1.1367 1.2449 7.2024 43 1 2.8449 1.1515 8.7180 44 1 2.2134 -0.4014 9.3336 45 1 4.6501 -0.1606 8.0367 46 1 3.6716 -1.6611 8.0097 47 1 3.7713 0.5809 5.9170 48 1 3.9058 -1.1884 5.6593 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457999321.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:58 Heat of formation + Delta-G solvation = -71.790865 kcal Electronic energy + Delta-G solvation = -23675.661312 eV Core-core repulsion = 20536.140022 eV Total energy + Delta-G solvation = -3139.521290 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.32000 -37.97426 -36.22873 -34.40014 -33.06547 -30.74354 -28.84974 -27.68434 -27.28584 -25.72009 -25.67820 -25.01936 -23.03533 -20.58781 -20.14400 -18.83855 -18.34000 -16.85371 -16.02436 -15.57900 -15.39550 -14.82713 -14.65815 -14.50253 -13.91384 -13.66042 -13.38875 -13.13080 -12.90219 -12.57693 -12.19503 -12.16529 -12.01264 -11.79592 -11.44129 -11.34641 -11.20124 -11.14323 -10.96052 -10.93371 -10.82395 -10.68649 -10.45046 -10.37144 -10.32639 -10.25595 -10.19134 -9.62323 -9.41701 -9.04622 -8.76684 -8.42322 -8.25097 -6.01659 -4.11611 3.15888 3.28445 3.35414 3.39386 3.78523 4.40343 4.52392 4.61386 4.69531 4.99305 5.01723 5.06631 5.25086 5.36823 5.42151 5.54210 5.58204 5.61041 5.64895 5.73796 5.75661 5.85714 5.85923 5.94112 6.03587 6.07211 6.17714 6.21480 6.29964 6.31583 6.35576 6.47705 6.52578 6.56684 6.81319 6.83141 6.95558 7.02933 7.09974 7.37064 7.56354 7.69960 8.01619 8.10632 8.20385 8.39750 8.79863 8.89807 9.54194 10.99711 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.036432 B = 0.003712 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.378852 B = 7542.266541 C = 7839.683789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.132 3.868 13 N -0.716 5.716 14 C 0.514 3.486 15 O -0.550 6.550 16 C -0.076 4.076 17 C -0.141 4.141 18 C -0.146 4.146 19 C -0.063 4.063 20 C -0.124 4.124 21 C -0.123 4.123 22 C -0.126 4.126 23 C -0.122 4.122 24 H 0.005 0.995 25 H 0.085 0.915 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.085 0.915 29 H 0.005 0.995 30 H 0.259 0.741 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.396 0.604 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.069 0.931 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.067 0.933 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.841 2.862 17.898 18.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.544 4.544 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.010 3.990 13 N -0.366 5.366 14 C 0.299 3.701 15 O -0.428 6.428 16 C -0.079 4.079 17 C -0.198 4.198 18 C -0.203 4.203 19 C -0.082 4.082 20 C -0.161 4.161 21 C -0.161 4.161 22 C -0.163 4.163 23 C -0.159 4.159 24 H 0.024 0.976 25 H 0.104 0.896 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.104 0.896 29 H 0.024 0.976 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.232 0.768 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.085 0.915 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.420 2.269 17.797 17.946 hybrid contribution -0.002 -0.098 -0.974 0.979 sum -0.421 2.171 16.823 16.968 Atomic orbital electron populations 1.21820 0.97807 0.99114 1.00008 1.18347 0.92750 0.92743 0.90634 1.21817 0.98540 0.98370 1.00004 1.20998 1.31421 1.12056 0.89938 0.92488 1.24877 0.94883 0.94911 0.98829 1.69802 1.36770 1.22726 1.23184 0.86581 0.79335 0.79398 0.82620 1.20722 1.21273 1.19907 1.21683 0.98024 0.95727 0.83614 1.46316 1.52547 1.31726 1.06010 1.20404 0.80460 0.84576 0.84664 1.90627 1.38562 1.26731 1.86897 1.20771 0.96812 0.96488 0.93864 1.21869 0.92904 1.02583 1.02477 1.22010 1.01980 0.93874 1.02405 1.21738 0.95711 0.99183 0.91576 1.22324 0.97851 1.00971 0.94967 1.22115 0.95736 1.00204 0.98020 1.22364 0.97773 1.00130 0.96051 1.22690 0.95374 1.02501 0.95354 0.97567 0.89632 0.95502 0.95491 0.89641 0.97561 0.93034 0.92892 0.92907 0.76848 0.91602 0.92027 0.92188 0.91636 0.92089 0.91425 0.90355 0.92132 0.91248 0.92185 0.92332 0.92126 0.91932 0.91475 0.90260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 2 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 3 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 4 C -0.51 -13.30 8.01 -34.44 -0.28 -13.58 16 5 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 7 N -0.89 -23.61 9.35 55.43 0.52 -23.10 16 8 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 12 C 0.13 2.83 4.50 -4.04 -0.02 2.81 16 13 N -0.72 -12.75 4.74 -60.29 -0.29 -13.04 16 14 C 0.51 8.81 6.26 -10.99 -0.07 8.74 16 15 O -0.55 -11.27 14.45 5.56 0.08 -11.19 16 16 C -0.08 -0.97 0.42 -155.66 -0.07 -1.03 16 17 C -0.14 -1.57 8.14 37.16 0.30 -1.27 16 18 C -0.15 -1.62 7.76 37.16 0.29 -1.33 16 19 C -0.06 -0.77 1.81 -88.92 -0.16 -0.93 16 20 C -0.12 -1.18 5.14 -25.61 -0.13 -1.31 16 21 C -0.12 -1.11 6.80 -25.62 -0.17 -1.29 16 22 C -0.13 -1.29 6.83 -25.07 -0.17 -1.46 16 23 C -0.12 -1.53 5.46 -24.70 -0.13 -1.67 16 24 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 25 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 29 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 30 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 31 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.40 6.47 5.00 -40.82 -0.20 6.27 16 34 H 0.07 0.60 7.08 -51.93 -0.37 0.23 16 35 H 0.06 0.68 7.57 -51.93 -0.39 0.29 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.77 6.02 -51.93 -0.31 0.46 16 38 H 0.06 0.68 7.56 -51.93 -0.39 0.28 16 39 H 0.07 0.62 6.12 -51.93 -0.32 0.30 16 40 H 0.08 1.08 8.06 -51.93 -0.42 0.66 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.61 5.48 -51.93 -0.28 0.33 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.07 0.83 5.65 -51.93 -0.29 0.53 16 48 H 0.08 1.20 7.00 -51.93 -0.36 0.84 16 LS Contribution 351.20 15.07 5.29 5.29 Total: -1.00 -27.71 351.20 -8.06 -35.77 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -8.46 Total: 5.20 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -0.18 Total: -14.70 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.23 Total: -36.14 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.08 Total: -11.19 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -27.71 -8.06 -35.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457999321.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.025 kcal (2) G-P(sol) polarization free energy of solvation -27.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds