Wall clock time and date at job start Tue Mar 31 2020 05:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46852 * 2 1 4 4 C 1.53001 * 109.47156 * 179.97438 * 3 2 1 5 5 H 1.09001 * 110.53880 * 52.38752 * 4 3 2 6 6 C 1.54265 * 110.48732 * 289.78026 * 4 3 2 7 7 C 1.53877 * 106.59732 * 217.70940 * 6 4 3 8 8 C 1.54267 * 106.59845 * 359.97438 * 7 6 4 9 9 C 1.54883 * 110.48981 * 175.00224 * 4 3 2 10 10 H 1.09002 * 110.75713 * 38.11997 * 9 4 3 11 11 C 1.50702 * 110.75373 * 274.93664 * 9 4 3 12 12 O 1.21280 * 120.00272 * 0.02562 * 11 9 4 13 13 N 1.34782 * 119.99825 * 179.97438 * 11 9 4 14 14 C 1.46497 * 120.00071 * 179.97438 * 13 11 9 15 15 C 1.53002 * 109.47349 * 179.97438 * 14 13 11 16 16 C 1.53007 * 109.46656 * 60.00640 * 15 14 13 17 17 C 1.52994 * 109.47188 * 300.00764 * 15 14 13 18 18 C 1.50692 * 109.47041 * 180.02562 * 15 14 13 19 19 H 1.08003 * 120.00272 * 357.91419 * 18 15 14 20 20 C 1.37881 * 119.99987 * 177.91486 * 18 15 14 21 21 N 1.31517 * 119.99673 * 7.59731 * 20 18 15 22 22 Si 1.86801 * 120.00233 * 187.60476 * 20 18 15 23 23 H 1.48505 * 109.46588 * 265.12016 * 22 20 18 24 24 H 1.48498 * 109.47295 * 25.11440 * 22 20 18 25 25 H 1.48495 * 109.47407 * 145.11754 * 22 20 18 26 26 H 1.09002 * 109.46941 * 59.99976 * 1 2 3 27 27 H 1.09005 * 109.47179 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47533 * 299.99637 * 1 2 3 29 29 H 1.08996 * 109.47533 * 240.00363 * 2 1 3 30 30 H 1.09002 * 109.46941 * 120.00024 * 2 1 3 31 31 H 1.09002 * 109.47149 * 60.00058 * 3 2 1 32 32 H 1.08992 * 109.47304 * 299.99911 * 3 2 1 33 33 H 1.09005 * 110.03002 * 336.98896 * 6 4 3 34 34 H 1.09002 * 110.03781 * 98.37428 * 6 4 3 35 35 H 1.09007 * 110.03184 * 119.28008 * 7 6 4 36 36 H 1.09000 * 110.02981 * 240.66084 * 7 6 4 37 37 H 1.08995 * 110.48632 * 264.93254 * 8 7 6 38 38 H 1.08997 * 110.48242 * 142.28577 * 8 7 6 39 39 H 0.96997 * 119.99711 * 0.02562 * 13 11 9 40 40 H 1.09004 * 109.46728 * 60.00243 * 14 13 11 41 41 H 1.08997 * 109.47445 * 300.01013 * 14 13 11 42 42 H 1.08995 * 109.46942 * 185.79245 * 16 15 14 43 43 H 1.09008 * 109.46472 * 305.79066 * 16 15 14 44 44 H 1.08996 * 109.46993 * 65.78989 * 16 15 14 45 45 H 1.09002 * 109.47143 * 299.98964 * 17 15 14 46 46 H 1.08995 * 109.47815 * 59.99677 * 17 15 14 47 47 H 1.09000 * 109.47169 * 179.97438 * 17 15 14 48 48 H 0.96997 * 119.99660 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9527 0.8196 -0.8077 6 6 4.1093 0.9538 1.3608 7 6 5.3558 1.8016 1.6696 8 6 5.5308 2.7755 0.4861 9 6 4.1121 2.8880 -0.1257 10 1 3.4959 3.5830 0.4447 11 6 4.1860 3.3061 -1.5717 12 8 3.8417 2.5368 -2.4438 13 7 4.6338 4.5354 -1.8957 14 6 4.7062 4.9416 -3.3013 15 6 5.2430 6.3715 -3.3920 16 6 6.6401 6.4320 -2.7711 17 6 4.3074 7.3165 -2.6354 18 6 5.3169 6.7896 -4.8379 19 1 5.0435 6.0926 -5.6162 20 6 5.7335 8.0620 -5.1672 21 7 6.2077 8.8603 -4.2358 22 14 5.6243 8.6521 -6.9362 23 1 6.9272 8.4302 -7.6133 24 1 4.5623 7.8948 -7.6460 25 1 5.2966 10.1004 -6.9556 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 3.3566 1.1006 2.1355 34 1 4.3798 -0.1002 1.2983 35 1 5.2081 2.3597 2.5942 36 1 6.2319 1.1590 1.7576 37 1 6.2302 2.3675 -0.2435 38 1 5.8714 3.7485 0.8400 39 1 4.9088 5.1507 -1.1982 40 1 3.7108 4.8989 -3.7436 41 1 5.3723 4.2681 -3.8404 42 1 6.9804 7.4670 -2.7422 43 1 6.6047 6.0326 -1.7574 44 1 7.3304 5.8392 -3.3713 45 1 3.3121 7.2735 -3.0778 46 1 4.2535 7.0143 -1.5896 47 1 4.6901 8.3351 -2.6996 48 1 6.5005 9.7556 -4.4673 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458043211.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:21 Heat of formation + Delta-G solvation = -84.884374 kcal Electronic energy + Delta-G solvation = -23071.508171 eV Core-core repulsion = 19931.419104 eV Total energy + Delta-G solvation = -3140.089067 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.94176 -37.75228 -36.17058 -34.54960 -33.20133 -30.95433 -29.79266 -29.14700 -25.72998 -25.64093 -25.25430 -24.65141 -21.71449 -21.48664 -19.79831 -19.43233 -18.72658 -17.17383 -15.85625 -15.51679 -15.26558 -14.92984 -14.70319 -14.57110 -13.99318 -13.80092 -13.36545 -12.92755 -12.90121 -12.72569 -12.52076 -12.34731 -12.14226 -11.74890 -11.41246 -11.39008 -11.23261 -11.17576 -10.94703 -10.85904 -10.69780 -10.68054 -10.44174 -10.40325 -10.36792 -10.36571 -10.19822 -9.61997 -9.45704 -9.13915 -8.79337 -8.41227 -8.25906 -6.02611 -4.10696 3.12927 3.28004 3.35666 3.40435 3.81341 4.40774 4.42951 4.56427 4.71121 4.96707 5.01094 5.14433 5.24491 5.33018 5.38215 5.39196 5.48909 5.53960 5.60905 5.63311 5.79004 5.81033 5.85450 5.86965 6.01321 6.05558 6.09424 6.20585 6.24834 6.27808 6.35090 6.39091 6.49568 6.53069 6.80443 6.83146 6.94701 7.02263 7.08987 7.36848 7.55915 7.70433 7.99635 8.09870 8.19174 8.39323 8.78456 8.90040 9.54457 10.99393 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.025742 B = 0.003608 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.469150 B = 7759.004522 C = 8430.111477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.110 4.110 4 C -0.071 4.071 5 H 0.087 0.913 6 C -0.120 4.120 7 C -0.122 4.122 8 C -0.113 4.113 9 C -0.113 4.113 10 H 0.097 0.903 11 C 0.511 3.489 12 O -0.552 6.552 13 N -0.717 5.717 14 C 0.132 3.868 15 C 0.056 3.944 16 C -0.128 4.128 17 C -0.129 4.129 18 C -0.508 4.508 19 H 0.057 0.943 20 C 0.067 3.933 21 N -0.885 5.885 22 Si 0.891 3.109 23 H -0.282 1.282 24 H -0.274 1.274 25 H -0.286 1.286 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.397 0.603 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.085 0.915 43 H 0.004 0.996 44 H 0.028 0.972 45 H 0.027 0.973 46 H 0.008 0.992 47 H 0.080 0.920 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.568 -12.203 13.419 18.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.148 4.148 4 C -0.090 4.090 5 H 0.105 0.895 6 C -0.158 4.158 7 C -0.160 4.160 8 C -0.151 4.151 9 C -0.135 4.135 10 H 0.115 0.885 11 C 0.296 3.704 12 O -0.430 6.430 13 N -0.367 5.367 14 C 0.009 3.991 15 C 0.055 3.945 16 C -0.186 4.186 17 C -0.187 4.187 18 C -0.546 4.546 19 H 0.075 0.925 20 C -0.134 4.134 21 N -0.523 5.523 22 Si 0.719 3.281 23 H -0.208 1.208 24 H -0.198 1.198 25 H -0.212 1.212 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.232 0.768 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.103 0.897 43 H 0.023 0.977 44 H 0.047 0.953 45 H 0.046 0.954 46 H 0.027 0.973 47 H 0.099 0.901 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.739 -12.546 12.791 18.533 hybrid contribution 0.120 0.780 -0.667 1.033 sum -4.619 -11.766 12.125 17.515 Atomic orbital electron populations 1.21779 0.96230 1.01229 1.01748 1.21506 0.95482 0.97134 1.01825 1.21622 0.94440 0.96734 1.01957 1.21840 0.95203 0.94408 0.97540 0.89468 1.22245 0.97100 0.99420 0.96995 1.22113 0.98131 0.97704 0.98053 1.22313 0.95300 1.00035 0.97473 1.22376 0.98492 0.98758 0.93827 0.88511 1.20426 0.77339 0.82036 0.90586 1.90647 1.49268 1.52422 1.50684 1.46339 1.64909 1.14858 1.10618 1.21672 1.00256 0.98099 0.79044 1.18348 0.92129 0.87918 0.96077 1.21856 0.98442 1.03354 0.94967 1.21789 0.98374 1.03547 0.94968 1.20986 1.44793 0.97957 0.90903 0.92461 1.24875 0.94588 0.96756 0.97183 1.69848 1.41890 1.08175 1.32382 0.86594 0.78372 0.77995 0.85151 1.20825 1.19831 1.21194 0.92699 0.93085 0.92991 0.91966 0.92289 0.92382 0.91469 0.91750 0.91892 0.91758 0.91801 0.91072 0.90967 0.76819 0.92867 0.92890 0.89657 0.97699 0.95313 0.95395 0.97340 0.90117 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.91 37.16 0.37 -1.03 16 2 C -0.12 -1.22 5.81 -26.73 -0.16 -1.38 16 3 C -0.11 -1.25 4.60 -26.73 -0.12 -1.37 16 4 C -0.07 -0.85 1.93 -88.96 -0.17 -1.02 16 5 H 0.09 1.23 7.44 -51.93 -0.39 0.84 16 6 C -0.12 -1.13 5.69 -25.61 -0.15 -1.27 16 7 C -0.12 -1.12 6.80 -25.61 -0.17 -1.30 16 8 C -0.11 -1.26 6.26 -25.06 -0.16 -1.42 16 9 C -0.11 -1.44 2.72 -89.77 -0.24 -1.69 16 10 H 0.10 1.11 8.06 -51.93 -0.42 0.69 16 11 C 0.51 8.78 7.13 -10.98 -0.08 8.70 16 12 O -0.55 -11.43 15.72 5.56 0.09 -11.34 16 13 N -0.72 -12.78 4.91 -60.29 -0.30 -13.08 16 14 C 0.13 2.83 4.50 -4.04 -0.02 2.81 16 15 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 16 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 17 C -0.13 -2.90 8.06 37.15 0.30 -2.60 16 18 C -0.51 -13.40 8.00 -34.44 -0.28 -13.67 16 19 H 0.06 1.53 7.76 -52.48 -0.41 1.12 16 20 C 0.07 1.78 5.12 -17.82 -0.09 1.69 16 21 N -0.88 -23.65 9.49 55.43 0.53 -23.12 16 22 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.53 7.62 -51.93 -0.40 0.13 16 31 H 0.06 0.59 7.95 -51.93 -0.41 0.18 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.55 7.71 -51.93 -0.40 0.15 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.88 8.04 -51.93 -0.42 0.46 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.40 6.42 6.16 -40.82 -0.25 6.17 16 40 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 41 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.08 2.12 6.16 -51.93 -0.32 1.80 16 43 H 0.00 0.08 6.72 -51.92 -0.35 -0.27 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.01 0.15 6.86 -51.93 -0.36 -0.20 16 47 H 0.08 2.00 6.21 -51.93 -0.32 1.68 16 48 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 366.93 15.07 5.53 5.53 Total: -1.00 -27.96 366.93 -8.99 -36.95 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -9.07 Total: 4.22 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -0.75 Total: -14.92 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.23 Total: -36.20 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.34 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -27.96 -8.99 -36.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458043211.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.938 kcal (2) G-P(sol) polarization free energy of solvation -27.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds