Wall clock time and date at job start Tue Mar 31 2020 05:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46924 * 2 1 4 4 C 1.53002 * 109.46751 * 180.02562 * 3 2 1 5 5 H 1.08993 * 110.02074 * 53.19189 * 4 3 2 6 6 C 1.54266 * 110.03109 * 291.75192 * 4 3 2 7 7 C 1.54892 * 104.19718 * 217.10964 * 6 4 3 8 8 C 1.54959 * 102.77799 * 37.91242 * 7 6 4 9 9 C 1.53877 * 110.03246 * 174.58684 * 4 3 2 10 10 H 1.09001 * 110.03131 * 238.61614 * 9 4 3 11 11 C 1.50694 * 110.03042 * 359.97438 * 9 4 3 12 12 O 1.21285 * 120.00291 * 92.32531 * 11 9 4 13 13 N 1.34779 * 120.00381 * 272.32285 * 11 9 4 14 14 C 1.46491 * 120.00503 * 180.02562 * 13 11 9 15 15 C 1.53001 * 109.47672 * 179.97438 * 14 13 11 16 16 C 1.53009 * 109.46710 * 60.00012 * 15 14 13 17 17 C 1.52997 * 109.47226 * 300.00551 * 15 14 13 18 18 C 1.50694 * 109.47550 * 179.97438 * 15 14 13 19 19 H 1.07995 * 120.00141 * 0.43692 * 18 15 14 20 20 C 1.37874 * 120.00057 * 180.43577 * 18 15 14 21 21 N 1.31520 * 120.00238 * 1.83694 * 20 18 15 22 22 Si 1.86799 * 120.00274 * 181.83777 * 20 18 15 23 23 H 1.48498 * 109.47466 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.47144 * 300.00033 * 22 20 18 25 25 H 1.48504 * 109.47204 * 59.99916 * 22 20 18 26 26 H 1.08999 * 109.47425 * 59.99908 * 1 2 3 27 27 H 1.09002 * 109.47582 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47090 * 299.99985 * 1 2 3 29 29 H 1.09007 * 109.46674 * 240.00448 * 2 1 3 30 30 H 1.09001 * 109.46980 * 120.00362 * 2 1 3 31 31 H 1.08997 * 109.47059 * 60.00623 * 3 2 1 32 32 H 1.09001 * 109.47587 * 299.99989 * 3 2 1 33 33 H 1.09000 * 110.48789 * 335.78605 * 6 4 3 34 34 H 1.08999 * 110.49242 * 98.42874 * 6 4 3 35 35 H 1.09001 * 110.75906 * 156.25788 * 7 6 4 36 36 H 1.08998 * 110.75109 * 279.44112 * 7 6 4 37 37 H 1.08998 * 110.52973 * 203.43575 * 8 7 6 38 38 H 1.09002 * 110.47830 * 80.76922 * 8 7 6 39 39 H 0.97001 * 119.99755 * 0.02562 * 13 11 9 40 40 H 1.09004 * 109.47256 * 59.99676 * 14 13 11 41 41 H 1.09003 * 109.47233 * 300.00265 * 14 13 11 42 42 H 1.08994 * 109.46686 * 172.42668 * 16 15 14 43 43 H 1.09003 * 109.46821 * 292.42796 * 16 15 14 44 44 H 1.09002 * 109.47049 * 52.42251 * 16 15 14 45 45 H 1.09003 * 109.46752 * 307.87047 * 17 15 14 46 46 H 1.09000 * 109.47559 * 67.86707 * 17 15 14 47 47 H 1.09002 * 109.47380 * 187.87086 * 17 15 14 48 48 H 0.96997 * 119.99375 * 354.54703 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9428 0.8290 -0.8208 6 6 4.0989 0.9051 1.3452 7 6 5.3543 1.7663 1.6311 8 6 4.9287 3.1695 1.1300 9 6 4.0971 2.8817 -0.1370 10 1 4.7256 2.9667 -1.0235 11 6 2.9437 3.8472 -0.2285 12 8 2.5070 4.3673 0.7763 13 7 2.3975 4.1330 -1.4271 14 6 1.2767 5.0721 -1.5161 15 6 0.8490 5.2188 -2.9778 16 6 0.4166 3.8557 -3.5219 17 6 2.0242 5.7476 -3.8024 18 6 -0.3044 6.1844 -3.0693 19 1 -0.6889 6.6525 -2.1752 20 6 -0.8687 6.4701 -4.2943 21 7 -0.4243 5.8728 -5.3785 22 14 -2.2645 7.7057 -4.4144 23 1 -2.6925 7.8330 -5.8306 24 1 -3.4098 7.2402 -3.5917 25 1 -1.8014 9.0257 -3.9161 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.3551 1.0430 2.1299 34 1 4.3702 -0.1468 1.2560 35 1 5.5736 1.7871 2.6986 36 1 6.2121 1.3969 1.0692 37 1 5.8047 3.7692 0.8833 38 1 4.3191 3.6735 1.8800 39 1 2.7465 3.7169 -2.2307 40 1 1.5847 6.0433 -1.1288 41 1 0.4395 4.6955 -0.9282 42 1 -0.0134 3.9809 -4.5155 43 1 1.2830 3.1968 -3.5813 44 1 -0.3275 3.4182 -2.8563 45 1 2.4219 6.6472 -3.3327 46 1 2.8044 4.9882 -3.8517 47 1 1.6834 5.9844 -4.8104 48 1 0.3509 5.2919 -5.3289 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458043214.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:23 Heat of formation + Delta-G solvation = -73.481200 kcal Electronic energy + Delta-G solvation = -23775.087280 eV Core-core repulsion = 20635.492692 eV Total energy + Delta-G solvation = -3139.594588 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.29454 -37.74228 -36.53344 -34.44732 -33.50869 -30.78618 -29.69953 -29.12198 -26.06081 -25.97652 -25.15922 -24.29819 -21.70731 -21.35779 -20.50432 -19.13743 -18.85498 -17.10487 -16.36707 -15.93858 -15.36568 -15.10342 -14.56462 -14.46833 -13.75249 -13.67085 -13.51538 -13.17579 -12.84647 -12.75136 -12.55860 -12.39067 -11.92280 -11.70918 -11.55379 -11.35395 -11.24182 -11.12674 -10.92888 -10.91730 -10.71780 -10.67594 -10.63582 -10.60775 -10.41591 -10.35649 -10.09211 -9.88249 -9.54936 -9.32792 -8.46607 -8.40558 -8.28980 -6.25974 -4.11573 3.05143 3.43758 3.44174 3.62858 3.72404 4.43506 4.51060 4.52407 4.65057 5.01029 5.05969 5.19759 5.27667 5.32267 5.39076 5.43936 5.46592 5.54353 5.57388 5.66240 5.80226 5.86545 5.87804 5.89336 6.00898 6.04681 6.11182 6.13125 6.17286 6.24239 6.25696 6.34625 6.37084 6.45007 6.56193 6.63373 6.71528 6.78910 6.91961 7.06621 7.11549 7.49993 7.65955 8.04582 8.19116 8.38573 8.70053 8.83393 9.59068 10.99559 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.022162 B = 0.004429 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.111865 B = 6320.519024 C = 6932.642828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.129 4.129 4 C -0.076 4.076 5 H 0.077 0.923 6 C -0.116 4.116 7 C -0.123 4.123 8 C -0.113 4.113 9 C -0.113 4.113 10 H 0.086 0.914 11 C 0.518 3.482 12 O -0.551 6.551 13 N -0.721 5.721 14 C 0.141 3.859 15 C 0.041 3.959 16 C -0.145 4.145 17 C -0.143 4.143 18 C -0.584 4.584 19 H 0.051 0.949 20 C 0.026 3.974 21 N -0.918 5.918 22 Si 1.064 2.936 23 H -0.283 1.283 24 H -0.288 1.288 25 H -0.288 1.288 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.396 0.604 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.074 0.926 43 H 0.014 0.986 44 H 0.035 0.965 45 H 0.036 0.964 46 H 0.016 0.984 47 H 0.069 0.931 48 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.661 -11.257 8.980 17.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.167 4.167 4 C -0.095 4.095 5 H 0.095 0.905 6 C -0.154 4.154 7 C -0.161 4.161 8 C -0.150 4.150 9 C -0.135 4.135 10 H 0.105 0.895 11 C 0.304 3.696 12 O -0.430 6.430 13 N -0.371 5.371 14 C 0.018 3.982 15 C 0.041 3.959 16 C -0.203 4.203 17 C -0.201 4.201 18 C -0.622 4.622 19 H 0.069 0.931 20 C -0.178 4.178 21 N -0.558 5.558 22 Si 0.892 3.108 23 H -0.208 1.208 24 H -0.215 1.215 25 H -0.215 1.215 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.105 0.895 39 H 0.230 0.770 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.093 0.907 43 H 0.033 0.967 44 H 0.054 0.946 45 H 0.055 0.945 46 H 0.035 0.965 47 H 0.088 0.912 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.245 -10.182 8.614 15.680 hybrid contribution 1.250 -0.813 0.596 1.606 sum 9.495 -10.995 9.210 17.201 Atomic orbital electron populations 1.21775 0.95895 1.01185 1.02269 1.21490 0.95921 0.96709 1.01475 1.21978 0.94010 0.97140 1.03537 1.21693 0.95871 0.93514 0.98377 0.90491 1.22441 0.97328 0.98801 0.96825 1.22489 0.97552 0.95254 1.00795 1.22355 0.98885 0.97234 0.96563 1.22051 0.95874 0.94930 1.00644 0.89518 1.20333 0.84005 0.81661 0.83618 1.90639 1.63449 1.53299 1.35587 1.46391 1.35803 1.46540 1.08387 1.21549 0.86477 0.90877 0.99288 1.18514 0.94372 0.94002 0.89048 1.22063 0.98316 0.96659 1.03259 1.22044 0.96828 0.98452 1.02824 1.21755 1.17339 1.27294 0.95848 0.93085 1.25652 1.01377 0.98652 0.92088 1.70873 1.25145 1.29230 1.30599 0.83618 0.75509 0.75639 0.75989 1.20847 1.21503 1.21480 0.92432 0.93069 0.92826 0.92316 0.92283 0.91161 0.90889 0.91257 0.91722 0.91542 0.91672 0.91699 0.89479 0.76984 0.92778 0.92705 0.90727 0.96663 0.94583 0.94511 0.96508 0.91189 0.90331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.91 37.16 0.37 -1.42 16 2 C -0.12 -1.32 5.79 -26.73 -0.15 -1.47 16 3 C -0.13 -1.69 3.40 -26.73 -0.09 -1.78 16 4 C -0.08 -0.85 2.92 -89.50 -0.26 -1.11 16 5 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 6 C -0.12 -1.16 5.56 -25.07 -0.14 -1.30 16 7 C -0.12 -1.17 6.91 -24.70 -0.17 -1.34 16 8 C -0.11 -1.34 6.31 -25.03 -0.16 -1.50 16 9 C -0.11 -1.44 3.29 -90.66 -0.30 -1.74 16 10 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 11 C 0.52 8.72 4.78 -10.99 -0.05 8.66 16 12 O -0.55 -11.26 15.25 5.55 0.08 -11.18 16 13 N -0.72 -12.51 4.10 -60.30 -0.25 -12.76 16 14 C 0.14 2.98 4.49 -4.05 -0.02 2.96 16 15 C 0.04 0.95 0.50 -155.66 -0.08 0.87 16 16 C -0.14 -3.19 7.88 37.16 0.29 -2.90 16 17 C -0.14 -3.16 7.88 37.16 0.29 -2.87 16 18 C -0.58 -15.54 8.01 -34.44 -0.28 -15.82 16 19 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 20 C 0.03 0.70 5.10 -17.82 -0.09 0.61 16 21 N -0.92 -25.77 12.11 55.43 0.67 -25.10 16 22 Si 1.06 24.47 29.90 -169.99 -5.08 19.39 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 25 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 30 H 0.06 0.59 7.53 -51.93 -0.39 0.20 16 31 H 0.07 1.08 7.37 -51.93 -0.38 0.69 16 32 H 0.07 1.09 6.50 -51.93 -0.34 0.75 16 33 H 0.07 0.75 7.75 -51.93 -0.40 0.35 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 1.24 6.81 -51.93 -0.35 0.89 16 39 H 0.40 6.22 6.30 -40.82 -0.26 5.96 16 40 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 42 H 0.07 1.83 5.14 -51.93 -0.27 1.56 16 43 H 0.01 0.28 7.05 -51.93 -0.37 -0.09 16 44 H 0.03 0.79 8.13 -51.93 -0.42 0.37 16 45 H 0.04 0.80 8.13 -51.93 -0.42 0.38 16 46 H 0.02 0.31 7.06 -51.93 -0.37 -0.06 16 47 H 0.07 1.70 5.30 -51.93 -0.28 1.43 16 48 H 0.28 7.60 3.59 -40.82 -0.15 7.46 16 LS Contribution 357.53 15.07 5.39 5.39 Total: -1.00 -29.03 357.53 -8.69 -37.72 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -8.67 Total: 6.67 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: -0.84 Total: -20.14 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.42 Total: -37.86 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.08 Total: -11.18 kcal Atomic # 14 Polarization: 24.47 SS G_CDS: -5.08 Total: 19.39 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.03 -8.69 -37.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458043214.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.758 kcal (2) G-P(sol) polarization free energy of solvation -29.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds