Wall clock time and date at job start Tue Mar 31 2020 05:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47142 * 2 1 4 4 C 1.53007 * 109.47428 * 180.02562 * 3 2 1 5 5 H 1.08999 * 110.05425 * 306.42615 * 4 3 2 6 6 C 1.54266 * 110.02878 * 67.83723 * 4 3 2 7 7 C 1.55238 * 104.23333 * 142.89793 * 6 4 3 8 8 C 1.54894 * 102.58338 * 322.08174 * 7 6 4 9 9 C 1.53869 * 110.03216 * 185.00100 * 4 3 2 10 10 H 1.08995 * 110.03881 * 0.02562 * 9 4 3 11 11 C 1.50706 * 110.02990 * 121.43522 * 9 4 3 12 12 O 1.21285 * 119.99618 * 358.61856 * 11 9 4 13 13 N 1.34775 * 120.00055 * 178.62087 * 11 9 4 14 14 C 1.46500 * 119.99922 * 179.97438 * 13 11 9 15 15 C 1.53000 * 109.46973 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.47396 * 300.00189 * 15 14 13 17 17 C 1.53001 * 109.46984 * 60.00185 * 15 14 13 18 18 C 1.50694 * 109.46965 * 179.97438 * 15 14 13 19 19 H 1.08004 * 120.00500 * 0.02562 * 18 15 14 20 20 C 1.37887 * 119.99933 * 180.02562 * 18 15 14 21 21 N 1.31512 * 119.99995 * 0.02562 * 20 18 15 22 22 Si 1.86799 * 119.99769 * 179.97438 * 20 18 15 23 23 H 1.48503 * 109.46854 * 90.00536 * 22 20 18 24 24 H 1.48505 * 109.47140 * 209.99721 * 22 20 18 25 25 H 1.48498 * 109.47538 * 330.00645 * 22 20 18 26 26 H 1.08999 * 109.46751 * 299.99195 * 1 2 3 27 27 H 1.08999 * 109.47169 * 59.99417 * 1 2 3 28 28 H 1.08997 * 109.46699 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46855 * 240.00778 * 2 1 3 30 30 H 1.08997 * 109.47561 * 120.00225 * 2 1 3 31 31 H 1.09008 * 109.47270 * 60.00266 * 3 2 1 32 32 H 1.08999 * 109.47565 * 300.00341 * 3 2 1 33 33 H 1.09005 * 110.48526 * 261.57665 * 6 4 3 34 34 H 1.09006 * 110.48581 * 24.21857 * 6 4 3 35 35 H 1.08996 * 110.89448 * 203.79739 * 7 6 4 36 36 H 1.08993 * 110.76342 * 80.31404 * 7 6 4 37 37 H 1.09002 * 110.48891 * 279.18596 * 8 7 6 38 38 H 1.08998 * 110.48494 * 156.67683 * 8 7 6 39 39 H 0.96995 * 119.99841 * 359.97438 * 13 11 9 40 40 H 1.08997 * 109.47259 * 299.99931 * 14 13 11 41 41 H 1.08996 * 109.46909 * 60.00042 * 14 13 11 42 42 H 1.09001 * 109.47134 * 59.99856 * 16 15 14 43 43 H 1.08999 * 109.46918 * 180.02562 * 16 15 14 44 44 H 1.09002 * 109.46888 * 299.99876 * 16 15 14 45 45 H 1.08997 * 109.47092 * 59.99873 * 17 15 14 46 46 H 1.09001 * 109.47364 * 179.97438 * 17 15 14 47 47 H 1.09001 * 109.47071 * 299.99853 * 17 15 14 48 48 H 0.96996 * 119.99964 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4426 -0.0006 5 1 3.9442 0.8345 0.8230 6 6 4.0979 0.8960 -1.3432 7 6 5.3560 1.7566 -1.6375 8 6 4.9269 3.1610 -1.1450 9 6 4.0971 2.8827 0.1254 10 1 3.2630 3.5815 0.1874 11 6 4.9682 3.0083 1.3487 12 8 5.1368 2.0509 2.0740 13 7 5.5598 4.1845 1.6368 14 6 6.4061 4.3068 2.8264 15 6 6.9512 5.7334 2.9200 16 6 7.7782 6.0463 1.6713 17 6 5.7855 6.7192 3.0199 18 6 7.8213 5.8593 4.1439 19 1 7.9709 5.0070 4.7902 20 6 8.4264 7.0627 4.4387 21 7 8.2439 8.1007 3.6521 22 14 9.5043 7.2190 5.9563 23 1 10.9073 6.8836 5.6036 24 1 9.4419 8.6122 6.4665 25 1 9.0210 6.2855 7.0052 26 1 -0.3633 0.5137 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9564 0.8901 32 1 1.6767 1.9564 -0.8899 33 1 4.3692 -0.1553 -1.2469 34 1 3.3533 1.0285 -2.1282 35 1 5.5754 1.7720 -2.7050 36 1 6.2135 1.3937 -1.0709 37 1 4.3162 3.6593 -1.8979 38 1 5.8020 3.7647 -0.9044 39 1 5.4252 4.9500 1.0566 40 1 5.8171 4.0835 3.7159 41 1 7.2368 3.6048 2.7549 42 1 7.1485 5.9553 0.7863 43 1 8.1668 7.0625 1.7383 44 1 8.6087 5.3440 1.6002 45 1 5.1964 6.4963 3.9095 46 1 6.1738 7.7355 3.0871 47 1 5.1558 6.6282 2.1349 48 1 8.6692 8.9473 3.8597 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458043217.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:27 Heat of formation + Delta-G solvation = -83.465803 kcal Electronic energy + Delta-G solvation = -23085.638660 eV Core-core repulsion = 19945.611107 eV Total energy + Delta-G solvation = -3140.027553 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.05637 -37.70705 -36.17715 -34.51977 -33.24079 -30.96122 -29.77779 -29.08059 -25.72682 -25.64443 -25.29361 -24.66318 -21.83101 -21.42058 -20.11888 -19.11780 -18.72727 -16.93224 -15.90011 -15.63975 -15.38494 -15.17624 -14.71709 -14.29111 -14.20105 -13.70125 -13.24271 -13.17775 -12.87431 -12.71846 -12.57664 -12.28197 -12.18284 -11.53158 -11.42011 -11.23589 -11.16929 -11.09019 -10.94580 -10.88600 -10.79323 -10.70213 -10.57066 -10.47686 -10.37911 -10.36263 -10.19531 -9.62978 -9.45803 -9.13464 -8.77818 -8.43494 -8.27755 -6.02091 -4.12070 3.12294 3.28196 3.35180 3.39163 3.78872 4.40254 4.46724 4.58690 4.76008 4.94236 4.95543 5.10876 5.24645 5.29383 5.34097 5.48924 5.50592 5.53573 5.62563 5.68537 5.76827 5.78428 5.84865 5.88917 5.94539 6.06604 6.09980 6.19417 6.23999 6.27302 6.30710 6.34654 6.51634 6.55975 6.80297 6.82809 6.94938 7.02317 7.08418 7.36381 7.55922 7.69589 8.01261 8.09514 8.18689 8.39234 8.77279 8.89172 9.53732 10.99315 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.030275 B = 0.003429 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.619053 B = 8162.532211 C = 8473.974294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.110 4.110 4 C -0.087 4.087 5 H 0.099 0.901 6 C -0.115 4.115 7 C -0.125 4.125 8 C -0.116 4.116 9 C -0.112 4.112 10 H 0.094 0.906 11 C 0.510 3.490 12 O -0.552 6.552 13 N -0.717 5.717 14 C 0.132 3.868 15 C 0.056 3.944 16 C -0.130 4.130 17 C -0.131 4.131 18 C -0.506 4.506 19 H 0.057 0.943 20 C 0.066 3.934 21 N -0.886 5.886 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.397 0.603 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.006 0.994 43 H 0.085 0.915 44 H 0.026 0.974 45 H 0.026 0.974 46 H 0.085 0.915 47 H 0.006 0.994 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.046 -9.765 -11.724 18.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.148 4.148 4 C -0.105 4.105 5 H 0.117 0.883 6 C -0.153 4.153 7 C -0.163 4.163 8 C -0.154 4.154 9 C -0.133 4.133 10 H 0.113 0.887 11 C 0.295 3.705 12 O -0.431 6.431 13 N -0.367 5.367 14 C 0.009 3.991 15 C 0.056 3.944 16 C -0.188 4.188 17 C -0.188 4.188 18 C -0.545 4.545 19 H 0.075 0.925 20 C -0.135 4.135 21 N -0.525 5.525 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.232 0.768 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.025 0.975 43 H 0.104 0.896 44 H 0.045 0.955 45 H 0.045 0.955 46 H 0.104 0.896 47 H 0.025 0.975 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.858 -10.232 -11.185 18.646 hybrid contribution 0.541 0.619 0.601 1.019 sum -10.317 -9.612 -10.584 17.631 Atomic orbital electron populations 1.21782 0.96215 1.01319 1.01666 1.21533 0.95409 0.97127 1.02112 1.21714 0.94660 0.96716 1.01699 1.21828 0.94771 0.94729 0.99209 0.88334 1.22484 0.96965 0.99204 0.96640 1.22557 0.98147 0.94985 1.00583 1.22376 0.99564 0.97862 0.95626 1.21991 0.98241 0.99239 0.93866 0.88739 1.20468 0.80438 0.83073 0.86476 1.90617 1.62903 1.38128 1.51452 1.46298 1.49490 1.12141 1.28762 1.21692 0.92211 1.00141 0.85033 1.18343 0.93019 0.87956 0.95118 1.21826 0.98213 1.03895 0.94868 1.21827 0.96532 1.04121 0.96347 1.21002 1.28565 0.96664 1.08231 0.92473 1.24881 0.96303 0.95730 0.96598 1.69801 1.43895 1.01470 1.37324 0.86577 0.80827 0.77242 0.83259 1.20718 1.21263 1.19901 0.92803 0.92947 0.93019 0.92037 0.91936 0.92054 0.92172 0.91820 0.91723 0.91543 0.91359 0.90861 0.90958 0.76774 0.92875 0.92876 0.97513 0.89615 0.95488 0.95487 0.89599 0.97519 0.93018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.16 0.37 -0.87 16 2 C -0.12 -1.15 5.79 -26.73 -0.15 -1.30 16 3 C -0.11 -1.12 4.34 -26.73 -0.12 -1.24 16 4 C -0.09 -1.04 2.53 -89.50 -0.23 -1.27 16 5 H 0.10 1.47 6.39 -51.93 -0.33 1.14 16 6 C -0.12 -1.18 5.54 -24.88 -0.14 -1.32 16 7 C -0.13 -1.35 6.94 -24.55 -0.17 -1.52 16 8 C -0.12 -1.30 6.30 -25.07 -0.16 -1.46 16 9 C -0.11 -1.44 2.95 -90.65 -0.27 -1.71 16 10 H 0.09 1.09 7.67 -51.93 -0.40 0.69 16 11 C 0.51 8.84 7.09 -10.98 -0.08 8.76 16 12 O -0.55 -11.55 15.21 5.55 0.08 -11.46 16 13 N -0.72 -12.83 4.64 -60.29 -0.28 -13.11 16 14 C 0.13 2.83 4.50 -4.04 -0.02 2.82 16 15 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 16 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 17 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 18 C -0.51 -13.34 8.01 -34.44 -0.28 -13.62 16 19 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 20 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 21 N -0.89 -23.66 9.35 55.43 0.52 -23.14 16 22 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.53 7.51 -51.92 -0.39 0.14 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 32 H 0.06 0.55 8.00 -51.93 -0.42 0.13 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.57 7.76 -51.93 -0.40 0.17 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.88 7.40 -51.93 -0.38 0.50 16 39 H 0.40 6.46 5.94 -40.82 -0.24 6.22 16 40 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 43 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16 47 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 48 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 364.20 15.07 5.49 5.49 Total: -1.00 -27.96 364.20 -8.96 -36.92 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -8.95 Total: 4.67 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -0.80 Total: -15.14 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: 0.24 Total: -36.25 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.08 Total: -11.46 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -27.96 -8.96 -36.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458043217.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.545 kcal (2) G-P(sol) polarization free energy of solvation -27.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds