Wall clock time and date at job start Tue Mar 31 2020 05:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.46911 * 2 1 4 4 H 1.09000 * 109.47187 * 55.00118 * 3 2 1 5 5 C 1.52993 * 109.47544 * 294.99919 * 3 2 1 6 6 C 1.52994 * 109.47544 * 179.97438 * 5 3 2 7 7 C 1.53006 * 109.47102 * 59.99983 * 6 5 3 8 8 C 1.52993 * 109.46935 * 300.00390 * 7 6 5 9 9 C 1.52994 * 109.47544 * 59.99880 * 8 7 6 10 10 H 1.09000 * 109.47187 * 59.99801 * 9 8 7 11 11 C 1.50701 * 109.47301 * 179.97438 * 9 8 7 12 12 O 1.21282 * 119.99758 * 119.99628 * 11 9 8 13 13 N 1.34772 * 120.00118 * 300.00063 * 11 9 8 14 14 C 1.46502 * 120.00124 * 180.02562 * 13 11 9 15 15 C 1.52997 * 109.47289 * 179.97438 * 14 13 11 16 16 C 1.53004 * 109.46911 * 300.00034 * 15 14 13 17 17 C 1.53008 * 109.46961 * 59.99652 * 15 14 13 18 18 C 1.50695 * 109.47196 * 179.97438 * 15 14 13 19 19 H 1.08001 * 120.00253 * 357.00750 * 18 15 14 20 20 C 1.37884 * 119.99977 * 177.00351 * 18 15 14 21 21 N 1.31509 * 119.99667 * 5.54866 * 20 18 15 22 22 Si 1.86802 * 119.99910 * 185.54538 * 20 18 15 23 23 H 1.48491 * 109.47185 * 85.00325 * 22 20 18 24 24 H 1.48498 * 109.46608 * 205.00240 * 22 20 18 25 25 H 1.48493 * 109.47129 * 325.00154 * 22 20 18 26 26 H 1.09005 * 109.47047 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47320 * 299.99434 * 1 2 3 28 28 H 1.08994 * 109.47090 * 60.00114 * 1 2 3 29 29 H 1.08999 * 109.46975 * 239.99893 * 2 1 3 30 30 H 1.09001 * 109.47200 * 120.00303 * 2 1 3 31 31 H 1.09006 * 109.47342 * 59.99765 * 5 3 2 32 32 H 1.09000 * 109.47041 * 300.00289 * 5 3 2 33 33 H 1.09005 * 109.47677 * 179.97438 * 6 5 3 34 34 H 1.09000 * 109.47187 * 300.00199 * 6 5 3 35 35 H 1.09000 * 109.46923 * 60.00054 * 7 6 5 36 36 H 1.08998 * 109.46854 * 179.97438 * 7 6 5 37 37 H 1.09001 * 109.46659 * 180.02562 * 8 7 6 38 38 H 1.09000 * 109.47041 * 299.99592 * 8 7 6 39 39 H 0.97001 * 119.99631 * 0.02562 * 13 11 9 40 40 H 1.09000 * 109.46984 * 299.99737 * 14 13 11 41 41 H 1.08997 * 109.47168 * 59.99394 * 14 13 11 42 42 H 1.08995 * 109.47184 * 53.93393 * 16 15 14 43 43 H 1.09004 * 109.46685 * 173.93377 * 16 15 14 44 44 H 1.08999 * 109.46726 * 293.92863 * 16 15 14 45 45 H 1.09000 * 109.47136 * 60.00290 * 17 15 14 46 46 H 1.08996 * 109.46754 * 180.02562 * 17 15 14 47 47 H 1.09000 * 109.47040 * 300.00099 * 17 15 14 48 48 H 0.97009 * 119.99772 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 2.1446 3.5692 -1.3070 7 6 3.6695 3.5716 -1.1809 8 6 4.0742 2.8876 0.1263 9 6 3.5648 1.4449 0.1261 10 1 3.9998 0.9061 -0.7157 11 6 3.9640 0.7709 1.4135 12 8 3.1127 0.3320 2.1575 13 7 5.2670 0.6561 1.7381 14 6 5.6551 0.0004 2.9894 15 6 7.1800 0.0023 3.1146 16 6 7.7897 -0.7535 1.9323 17 6 7.6898 1.4450 3.1153 18 6 7.5791 -0.6716 4.4020 19 1 6.8203 -1.0191 5.0876 20 6 8.9131 -0.8447 4.7048 21 7 9.8369 -0.3263 3.9254 22 14 9.4082 -1.8154 6.2221 23 1 9.4414 -3.2633 5.8943 24 1 10.7544 -1.3786 6.6715 25 1 8.4224 -1.5758 7.3064 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 0.5489 2.1252 -1.3969 32 1 2.0699 1.5875 -2.1491 33 1 1.8567 4.0565 -2.2386 34 1 1.7097 4.1079 -0.4652 35 1 4.1045 3.0329 -2.0227 36 1 4.0324 4.5994 -1.1812 37 1 5.1605 2.8897 0.2163 38 1 3.6392 3.4263 0.9681 39 1 5.9478 1.0076 1.1433 40 1 5.2204 0.5386 3.8317 41 1 5.2922 -1.0274 2.9888 42 1 7.4150 -0.3322 0.9995 43 1 8.8753 -0.6607 1.9627 44 1 7.5133 -1.8062 1.9926 45 1 7.2554 1.9835 3.9575 46 1 8.7761 1.4463 3.2040 47 1 7.4010 1.9327 2.1842 48 1 10.7754 -0.4477 4.1386 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458048143.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:37 Heat of formation + Delta-G solvation = -82.531845 kcal Electronic energy + Delta-G solvation = -23486.163384 eV Core-core repulsion = 20346.176330 eV Total energy + Delta-G solvation = -3139.987053 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.20169 -37.85781 -36.23849 -34.04654 -33.08627 -31.44697 -30.42457 -29.02925 -25.73520 -25.71777 -25.05270 -23.76774 -23.07649 -20.65975 -20.27033 -19.54577 -18.74393 -16.99280 -15.84350 -15.38893 -14.96153 -14.82573 -14.74328 -14.45556 -14.03984 -13.82592 -13.39389 -13.26351 -12.92923 -12.65506 -12.51239 -12.35111 -12.11801 -11.58537 -11.53988 -11.43023 -11.22657 -11.14267 -11.06687 -10.86309 -10.76586 -10.69071 -10.48919 -10.38823 -10.29570 -10.18373 -10.00159 -9.61719 -9.39011 -8.99374 -8.77031 -8.42171 -8.25207 -6.02369 -4.11051 3.11212 3.29045 3.35485 3.38953 3.80399 4.40727 4.57291 4.64253 4.72984 5.02380 5.12973 5.24809 5.27856 5.31950 5.34312 5.37083 5.42916 5.51494 5.65805 5.69939 5.77054 5.95583 5.97928 6.01213 6.04055 6.10412 6.17926 6.23816 6.26257 6.30343 6.34796 6.51953 6.53732 6.63623 6.82016 6.82336 6.94384 7.02304 7.09867 7.36451 7.56017 7.70277 7.99700 8.09187 8.18379 8.39089 8.78143 8.89752 9.54341 10.99621 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.028305 B = 0.003848 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.996366 B = 7273.882344 C = 7923.563553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C -0.062 4.062 4 H 0.074 0.926 5 C -0.116 4.116 6 C -0.121 4.121 7 C -0.117 4.117 8 C -0.111 4.111 9 C -0.103 4.103 10 H 0.091 0.909 11 C 0.507 3.493 12 O -0.548 6.548 13 N -0.717 5.717 14 C 0.132 3.868 15 C 0.055 3.945 16 C -0.128 4.128 17 C -0.129 4.129 18 C -0.507 4.507 19 H 0.057 0.943 20 C 0.067 3.933 21 N -0.885 5.885 22 Si 0.892 3.108 23 H -0.280 1.280 24 H -0.287 1.287 25 H -0.275 1.275 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.397 0.603 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.006 0.994 43 H 0.081 0.919 44 H 0.028 0.972 45 H 0.026 0.974 46 H 0.085 0.915 47 H 0.005 0.995 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.903 6.401 -12.087 18.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C -0.081 4.081 4 H 0.093 0.907 5 C -0.153 4.153 6 C -0.159 4.159 7 C -0.154 4.154 8 C -0.149 4.149 9 C -0.125 4.125 10 H 0.109 0.891 11 C 0.293 3.707 12 O -0.427 6.427 13 N -0.367 5.367 14 C 0.009 3.991 15 C 0.055 3.945 16 C -0.186 4.186 17 C -0.187 4.187 18 C -0.546 4.546 19 H 0.075 0.925 20 C -0.134 4.134 21 N -0.524 5.524 22 Si 0.720 3.280 23 H -0.206 1.206 24 H -0.213 1.213 25 H -0.200 1.200 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.112 0.888 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.232 0.768 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.025 0.975 43 H 0.099 0.901 44 H 0.048 0.952 45 H 0.045 0.955 46 H 0.104 0.896 47 H 0.024 0.976 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.283 6.090 -11.541 17.921 hybrid contribution 0.740 -0.396 0.536 0.996 sum -11.542 5.694 -11.005 16.934 Atomic orbital electron populations 1.21753 0.96428 1.01039 1.01183 1.21837 0.95561 0.96375 1.03328 1.20906 0.92662 0.96829 0.97724 0.90709 1.21664 1.00671 0.95418 0.97549 1.21563 0.95792 0.96984 1.01512 1.21524 0.95974 1.00470 0.97481 1.21520 1.00985 0.93942 0.98455 1.21384 0.97715 0.96880 0.96496 0.89073 1.20548 0.82892 0.79619 0.87618 1.90589 1.49939 1.49656 1.52513 1.46362 1.06712 1.59177 1.24452 1.21671 0.98253 0.95732 0.83401 1.18356 0.87297 0.93547 0.95334 1.21797 1.03925 0.98133 0.94732 1.21836 1.04487 0.96338 0.96010 1.20973 0.91915 1.37999 1.03703 0.92489 1.24873 0.96519 0.95370 0.96644 1.69827 1.00348 1.44125 1.38057 0.86605 0.77714 0.80433 0.83234 1.20635 1.21335 1.19977 0.93280 0.92905 0.93270 0.93111 0.88818 0.91681 0.92100 0.92230 0.92011 0.91850 0.91828 0.91294 0.91424 0.76820 0.92871 0.92847 0.97484 0.90054 0.95238 0.95511 0.89642 0.97609 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.67 37.16 0.36 -1.26 16 2 C -0.13 -1.71 5.14 -26.73 -0.14 -1.85 16 3 C -0.06 -0.75 1.36 -90.62 -0.12 -0.87 16 4 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 5 C -0.12 -1.10 4.96 -26.74 -0.13 -1.23 16 6 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 7 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 8 C -0.11 -1.24 5.10 -26.74 -0.14 -1.38 16 9 C -0.10 -1.31 2.06 -91.77 -0.19 -1.50 16 10 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 11 C 0.51 8.57 6.83 -10.99 -0.08 8.49 16 12 O -0.55 -11.00 13.67 5.56 0.08 -10.93 16 13 N -0.72 -12.63 4.80 -60.30 -0.29 -12.92 16 14 C 0.13 2.81 4.50 -4.04 -0.02 2.79 16 15 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 16 C -0.13 -2.88 8.03 37.16 0.30 -2.58 16 17 C -0.13 -2.90 8.11 37.16 0.30 -2.59 16 18 C -0.51 -13.32 8.01 -34.44 -0.28 -13.60 16 19 H 0.06 1.52 7.75 -52.49 -0.41 1.11 16 20 C 0.07 1.77 5.13 -17.82 -0.09 1.68 16 21 N -0.89 -23.58 9.45 55.43 0.52 -23.06 16 22 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.46 6.56 -51.93 -0.34 0.12 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 1.50 5.42 -51.93 -0.28 1.22 16 31 H 0.06 0.58 6.57 -51.93 -0.34 0.24 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.76 7.56 -51.93 -0.39 0.37 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.40 6.37 5.58 -40.82 -0.23 6.14 16 40 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.01 0.12 6.71 -51.93 -0.35 -0.23 16 43 H 0.08 2.01 6.25 -51.93 -0.32 1.68 16 44 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.08 2.13 6.10 -51.93 -0.32 1.81 16 47 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 48 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 355.79 15.07 5.36 5.36 Total: -1.00 -27.40 355.79 -8.78 -36.17 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -8.81 Total: 4.73 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -0.62 Total: -15.12 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.23 Total: -35.97 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.08 Total: -10.93 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -27.40 -8.78 -36.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458048143.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.358 kcal (2) G-P(sol) polarization free energy of solvation -27.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds