Wall clock time and date at job start Tue Mar 31 2020 05:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47276 * 2 1 4 4 H 1.09000 * 109.47140 * 54.99820 * 3 2 1 5 5 C 1.52996 * 109.47165 * 294.99866 * 3 2 1 6 6 C 1.53008 * 109.47409 * 179.97438 * 5 3 2 7 7 C 1.52993 * 109.46733 * 60.00092 * 6 5 3 8 8 C 1.52996 * 109.47473 * 300.00094 * 7 6 5 9 9 C 1.53000 * 109.47328 * 60.00001 * 8 7 6 10 10 H 1.09002 * 109.47398 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.46912 * 60.00217 * 9 8 7 12 12 O 1.21278 * 119.99818 * 240.00149 * 11 9 8 13 13 N 1.34777 * 119.99991 * 60.00288 * 11 9 8 14 14 C 1.46499 * 119.99824 * 180.02562 * 13 11 9 15 15 C 1.53002 * 109.47125 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.46911 * 299.99527 * 15 14 13 17 17 C 1.52996 * 109.46969 * 59.99789 * 15 14 13 18 18 C 1.50703 * 109.47292 * 179.97438 * 15 14 13 19 19 H 1.08003 * 119.99742 * 359.97438 * 18 15 14 20 20 C 1.37873 * 119.99873 * 179.97438 * 18 15 14 21 21 N 1.31509 * 120.00433 * 359.97438 * 20 18 15 22 22 Si 1.86801 * 119.99573 * 180.02562 * 20 18 15 23 23 H 1.48496 * 109.47592 * 60.00143 * 22 20 18 24 24 H 1.48503 * 109.46778 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47134 * 299.99538 * 22 20 18 26 26 H 1.08996 * 109.47297 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47148 * 299.99765 * 1 2 3 28 28 H 1.09001 * 109.46931 * 59.99839 * 1 2 3 29 29 H 1.08998 * 109.47375 * 239.99781 * 2 1 3 30 30 H 1.09001 * 109.47436 * 119.99582 * 2 1 3 31 31 H 1.09004 * 109.47552 * 300.00012 * 5 3 2 32 32 H 1.09001 * 109.46993 * 60.00298 * 5 3 2 33 33 H 1.09002 * 109.47021 * 180.02562 * 6 5 3 34 34 H 1.09004 * 109.46943 * 300.00592 * 6 5 3 35 35 H 1.09000 * 109.47250 * 60.00079 * 7 6 5 36 36 H 1.09004 * 109.46862 * 180.02562 * 7 6 5 37 37 H 1.09004 * 109.47368 * 300.00213 * 8 7 6 38 38 H 1.09001 * 109.47372 * 180.02562 * 8 7 6 39 39 H 0.96998 * 120.00094 * 359.97438 * 13 11 9 40 40 H 1.09004 * 109.47041 * 299.99672 * 14 13 11 41 41 H 1.09002 * 109.47391 * 59.99855 * 14 13 11 42 42 H 1.09004 * 109.46724 * 60.00450 * 16 15 14 43 43 H 1.09001 * 109.47194 * 179.97438 * 16 15 14 44 44 H 1.08992 * 109.47852 * 300.00248 * 16 15 14 45 45 H 1.08992 * 109.47534 * 60.00418 * 17 15 14 46 46 H 1.09001 * 109.46997 * 180.02562 * 17 15 14 47 47 H 1.09000 * 109.47054 * 300.00097 * 17 15 14 48 48 H 0.97001 * 120.00323 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 2.1448 3.5693 -1.3071 7 6 3.6695 3.5715 -1.1811 8 6 4.0743 2.8875 0.1262 9 6 3.5648 1.4448 0.1260 10 1 3.8528 0.9576 1.0576 11 6 4.1662 0.6999 -1.0378 12 8 3.4461 0.2149 -1.8846 13 7 5.5042 0.5727 -1.1376 14 6 6.0888 -0.1510 -2.2692 15 6 7.6137 -0.1483 -2.1435 16 6 8.1227 1.2946 -2.1431 17 6 8.0188 -0.8325 -0.8364 18 6 8.2151 -0.8933 -3.3073 19 1 7.5737 -1.3258 -4.0610 20 6 9.5839 -1.0226 -3.4098 21 7 10.3648 -0.4955 -2.4924 22 14 10.3292 -1.9455 -4.8528 23 1 9.9356 -1.2817 -6.1216 24 1 11.8093 -1.9418 -4.7314 25 1 9.8356 -3.3460 -4.8530 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 2.0699 1.5875 -2.1492 32 1 0.5490 2.1253 -1.3969 33 1 1.8560 4.0567 -2.2383 34 1 1.7098 4.1080 -0.4653 35 1 4.1045 3.0327 -2.0229 36 1 4.0325 4.5994 -1.1805 37 1 3.6394 3.4263 0.9681 38 1 5.1606 2.8896 0.2162 39 1 6.0802 0.9609 -0.4605 40 1 5.7258 -1.1789 -2.2698 41 1 5.8005 0.3367 -3.2005 42 1 7.6878 1.8330 -1.3010 43 1 9.2090 1.2966 -2.0531 44 1 7.8341 1.7820 -3.0742 45 1 7.6562 -1.8603 -0.8367 46 1 9.1051 -0.8301 -0.7466 47 1 7.5838 -0.2940 0.0056 48 1 11.3278 -0.5868 -2.5643 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458048144.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:40 Heat of formation + Delta-G solvation = -77.339869 kcal Electronic energy + Delta-G solvation = -23896.453744 eV Core-core repulsion = 20756.691832 eV Total energy + Delta-G solvation = -3139.761913 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.47878 -37.51470 -36.05513 -34.06808 -33.10137 -31.40524 -30.34958 -28.91539 -25.72579 -25.71831 -25.04302 -23.72736 -22.92973 -20.93521 -20.48502 -19.23167 -18.66475 -16.40707 -15.82485 -15.68346 -15.22085 -14.83672 -14.65632 -14.27717 -13.75035 -13.70356 -13.28253 -13.23569 -12.86042 -12.76655 -12.51656 -12.18139 -12.00739 -11.81029 -11.46969 -11.37873 -11.28015 -11.17219 -10.95842 -10.84964 -10.74629 -10.63253 -10.48425 -10.31056 -10.19011 -9.93028 -9.88840 -9.61603 -9.36547 -8.91895 -8.75549 -8.41705 -8.23831 -6.01580 -4.11684 3.13873 3.30125 3.34438 3.37917 3.82891 4.40544 4.63953 4.76696 4.82245 5.14614 5.18458 5.25071 5.29517 5.36006 5.41654 5.50832 5.54361 5.62677 5.72676 5.76888 5.88039 5.95534 6.00690 6.06686 6.18678 6.25304 6.29594 6.30653 6.33166 6.35286 6.46723 6.52308 6.61476 6.71101 6.83040 6.84779 6.95233 7.02667 7.13689 7.37272 7.56181 7.69645 8.01420 8.10292 8.19908 8.39547 8.80683 8.89574 9.54091 10.99700 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.027224 B = 0.004118 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.255792 B = 6797.231753 C = 7118.126343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.134 4.134 3 C -0.059 4.059 4 H 0.066 0.934 5 C -0.130 4.130 6 C -0.117 4.117 7 C -0.123 4.123 8 C -0.109 4.109 9 C -0.108 4.108 10 H 0.090 0.910 11 C 0.513 3.487 12 O -0.544 6.544 13 N -0.717 5.717 14 C 0.133 3.867 15 C 0.056 3.944 16 C -0.129 4.129 17 C -0.130 4.130 18 C -0.506 4.506 19 H 0.056 0.944 20 C 0.067 3.933 21 N -0.886 5.886 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.048 0.952 27 H 0.045 0.955 28 H 0.055 0.945 29 H 0.094 0.906 30 H 0.050 0.950 31 H 0.095 0.905 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.396 0.604 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.006 0.994 43 H 0.085 0.915 44 H 0.026 0.974 45 H 0.026 0.974 46 H 0.085 0.915 47 H 0.006 0.994 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.424 6.781 7.478 16.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C -0.078 4.078 4 H 0.084 0.916 5 C -0.167 4.167 6 C -0.154 4.154 7 C -0.160 4.160 8 C -0.147 4.147 9 C -0.129 4.129 10 H 0.108 0.892 11 C 0.299 3.701 12 O -0.424 6.424 13 N -0.367 5.367 14 C 0.010 3.990 15 C 0.055 3.945 16 C -0.187 4.187 17 C -0.188 4.188 18 C -0.545 4.545 19 H 0.074 0.926 20 C -0.135 4.135 21 N -0.525 5.525 22 Si 0.721 3.279 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.113 0.887 30 H 0.069 0.931 31 H 0.113 0.887 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.231 0.769 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.025 0.975 43 H 0.103 0.897 44 H 0.045 0.955 45 H 0.045 0.955 46 H 0.103 0.897 47 H 0.024 0.976 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.707 6.439 6.900 16.642 hybrid contribution 0.804 -0.300 -0.342 0.924 sum -12.903 6.139 6.558 15.722 Atomic orbital electron populations 1.21776 0.96535 1.01016 1.01206 1.21833 0.95287 0.96528 1.03482 1.20870 0.92264 0.96524 0.98102 0.91600 1.21900 1.00152 0.95180 0.99459 1.21526 0.95512 0.97375 1.01029 1.21556 0.96274 1.00346 0.97848 1.21509 1.00836 0.93818 0.98512 1.21436 0.96981 0.96547 0.97940 0.89193 1.20422 0.82587 0.80046 0.87033 1.90515 1.59933 1.49380 1.42550 1.46358 1.06238 1.56096 1.28035 1.21665 0.95882 0.94678 0.86740 1.18345 0.87453 0.93675 0.95005 1.21812 1.04213 0.96139 0.96518 1.21819 1.04142 0.97544 0.95257 1.20950 0.91541 1.34368 1.07597 0.92568 1.24870 0.97099 0.95398 0.96090 1.69791 1.04024 1.44865 1.33791 0.86646 0.77879 0.80437 0.82967 1.20301 1.21336 1.20295 0.93276 0.93570 0.92635 0.88747 0.93101 0.88665 0.92560 0.92429 0.92669 0.91585 0.92058 0.91241 0.91438 0.76895 0.92913 0.92925 0.97549 0.89672 0.95527 0.95507 0.89666 0.97550 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.67 37.16 0.36 -1.23 16 2 C -0.13 -1.70 5.03 -26.73 -0.13 -1.83 16 3 C -0.06 -0.71 1.93 -90.62 -0.17 -0.88 16 4 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 5 C -0.13 -1.63 4.69 -26.73 -0.13 -1.76 16 6 C -0.12 -1.32 5.92 -26.73 -0.16 -1.48 16 7 C -0.12 -1.48 5.70 -26.74 -0.15 -1.63 16 8 C -0.11 -1.22 5.35 -26.73 -0.14 -1.36 16 9 C -0.11 -1.36 2.55 -91.77 -0.23 -1.59 16 10 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 11 C 0.51 8.41 5.36 -10.98 -0.06 8.35 16 12 O -0.54 -10.40 11.37 5.56 0.06 -10.33 16 13 N -0.72 -12.44 4.85 -60.29 -0.29 -12.73 16 14 C 0.13 2.79 4.50 -4.04 -0.02 2.77 16 15 C 0.06 1.28 0.50 -155.66 -0.08 1.21 16 16 C -0.13 -2.88 8.08 37.16 0.30 -2.58 16 17 C -0.13 -2.92 8.08 37.16 0.30 -2.61 16 18 C -0.51 -13.22 8.01 -34.44 -0.28 -13.49 16 19 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 20 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 21 N -0.89 -23.54 9.35 55.43 0.52 -23.02 16 22 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.60 6.56 -51.93 -0.34 0.25 16 29 H 0.09 1.48 5.65 -51.93 -0.29 1.18 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.10 1.50 5.51 -51.93 -0.29 1.21 16 32 H 0.06 0.65 6.57 -51.93 -0.34 0.31 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.97 7.22 -51.93 -0.37 0.59 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.75 7.57 -51.93 -0.39 0.36 16 39 H 0.40 6.34 5.58 -40.82 -0.23 6.11 16 40 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 43 H 0.08 2.11 6.07 -51.93 -0.32 1.80 16 44 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.08 2.12 6.07 -51.93 -0.32 1.80 16 47 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 48 H 0.26 6.70 8.31 -40.82 -0.34 6.37 16 LS Contribution 349.37 15.07 5.26 5.26 Total: -1.00 -26.75 349.37 -8.79 -35.54 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -8.64 Total: 6.05 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: -0.69 Total: -16.47 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.23 Total: -35.75 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.06 Total: -10.33 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -26.75 -8.79 -35.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458048144.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.803 kcal (2) G-P(sol) polarization free energy of solvation -26.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds