Wall clock time and date at job start Tue Mar 31 2020 05:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46925 * 2 1 4 4 H 1.08995 * 109.47132 * 304.99469 * 3 2 1 5 5 C 1.52999 * 109.47215 * 65.00026 * 3 2 1 6 6 C 1.53003 * 109.46966 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47195 * 299.99666 * 6 5 3 8 8 C 1.52999 * 109.46891 * 60.00288 * 7 6 5 9 9 C 1.52997 * 109.47215 * 299.99666 * 8 7 6 10 10 H 1.09004 * 109.47423 * 180.02562 * 9 8 7 11 11 C 1.50707 * 109.47506 * 300.00452 * 9 8 7 12 12 O 1.21274 * 119.99960 * 119.99436 * 11 9 8 13 13 N 1.34777 * 119.99297 * 299.99924 * 11 9 8 14 14 C 1.46508 * 119.99562 * 179.97438 * 13 11 9 15 15 C 1.52997 * 109.47214 * 179.97438 * 14 13 11 16 16 C 1.53003 * 109.47195 * 59.99627 * 15 14 13 17 17 C 1.52999 * 109.46891 * 299.99916 * 15 14 13 18 18 C 1.50695 * 109.47241 * 179.97438 * 15 14 13 19 19 H 1.07996 * 120.00031 * 4.71832 * 18 15 14 20 20 C 1.37874 * 119.99907 * 184.71294 * 18 15 14 21 21 N 1.31523 * 119.99820 * 152.00400 * 20 18 15 22 22 Si 1.86798 * 120.00420 * 332.00222 * 20 18 15 23 23 H 1.48500 * 109.47544 * 179.97438 * 22 20 18 24 24 H 1.48507 * 109.46997 * 300.00024 * 22 20 18 25 25 H 1.48497 * 109.46960 * 59.99804 * 22 20 18 26 26 H 1.08999 * 109.47735 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47488 * 300.00345 * 1 2 3 28 28 H 1.09004 * 109.47296 * 60.00117 * 1 2 3 29 29 H 1.08994 * 109.46767 * 239.99802 * 2 1 3 30 30 H 1.09006 * 109.46781 * 119.99922 * 2 1 3 31 31 H 1.09000 * 109.47146 * 299.99118 * 5 3 2 32 32 H 1.08995 * 109.47525 * 59.99684 * 5 3 2 33 33 H 1.08996 * 109.47532 * 59.99937 * 6 5 3 34 34 H 1.09004 * 109.47174 * 179.97438 * 6 5 3 35 35 H 1.08994 * 109.47361 * 180.02562 * 7 6 5 36 36 H 1.08994 * 109.47621 * 300.00483 * 7 6 5 37 37 H 1.09008 * 109.47222 * 180.02562 * 8 7 6 38 38 H 1.08995 * 109.47525 * 59.99983 * 8 7 6 39 39 H 0.96994 * 120.00602 * 359.97438 * 13 11 9 40 40 H 1.08994 * 109.47164 * 59.99582 * 14 13 11 41 41 H 1.09001 * 109.46505 * 299.99627 * 14 13 11 42 42 H 1.08998 * 109.47215 * 173.26771 * 16 15 14 43 43 H 1.09001 * 109.47084 * 293.26906 * 16 15 14 44 44 H 1.09001 * 109.47244 * 53.26705 * 16 15 14 45 45 H 1.08998 * 109.47206 * 292.45761 * 17 15 14 46 46 H 1.08997 * 109.47532 * 52.46336 * 17 15 14 47 47 H 1.09007 * 109.47131 * 172.46199 * 17 15 14 48 48 H 0.96995 * 120.00030 * 354.88029 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 2.1457 3.5689 1.3075 7 6 3.6705 3.5702 1.1822 8 6 4.0753 2.8861 -0.1251 9 6 3.5648 1.4438 -0.1254 10 1 3.8536 0.9563 -1.0566 11 6 4.1652 0.6982 1.0386 12 8 3.4444 0.2136 1.8850 13 7 5.5031 0.5700 1.1388 14 6 6.0868 -0.1543 2.2706 15 6 7.6116 -0.1537 2.1449 16 6 8.1226 1.2885 2.1440 17 6 8.0157 -0.8387 0.8378 18 6 8.2120 -0.8982 3.3094 19 1 7.5698 -1.3938 4.0224 20 6 9.5811 -0.9469 3.4644 21 7 10.1027 -1.0773 4.6647 22 14 10.6953 -0.8276 1.9699 23 1 12.1138 -0.9040 2.4025 24 1 10.3994 -1.9481 1.0412 25 1 10.4583 0.4647 1.2777 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8932 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8901 31 1 0.5488 2.1253 1.3968 32 1 2.0697 1.5876 2.1492 33 1 1.7115 4.1082 0.4657 34 1 1.8570 4.0564 2.2388 35 1 4.0343 4.5976 1.1828 36 1 4.1048 3.0309 2.0239 37 1 5.1617 2.8866 -0.2143 38 1 3.6411 3.4253 -0.9670 39 1 6.0795 0.9574 0.4617 40 1 5.7230 -1.1818 2.2709 41 1 5.7984 0.3335 3.2017 42 1 9.2122 1.2878 2.1751 43 1 7.7852 1.7930 1.2387 44 1 7.7346 1.8120 3.0178 45 1 7.7709 -1.8994 0.8927 46 1 7.4763 -0.3837 0.0072 47 1 9.0882 -0.7210 0.6825 48 1 9.5291 -1.0646 5.4468 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458048145.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:42 Heat of formation + Delta-G solvation = -66.212997 kcal Electronic energy + Delta-G solvation = -23990.891867 eV Core-core repulsion = 20851.612452 eV Total energy + Delta-G solvation = -3139.279415 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.59015 -37.71136 -36.29465 -34.15157 -33.17341 -31.69994 -30.77787 -28.98389 -26.37897 -26.02994 -24.50262 -23.79448 -22.99233 -21.00372 -20.55539 -19.44387 -18.88713 -16.88498 -16.24298 -15.86764 -15.34446 -15.02066 -14.71987 -14.33763 -13.89351 -13.87781 -13.46287 -13.30305 -13.01004 -12.77845 -12.61472 -12.52977 -12.11288 -12.05809 -11.86923 -11.85834 -11.52112 -11.42411 -11.25284 -11.01483 -10.74383 -10.56544 -10.48578 -10.19328 -10.07413 -10.00322 -9.98385 -9.92910 -9.10785 -8.98009 -8.90516 -8.42870 -8.14761 -6.53686 -4.09894 3.01950 3.31779 3.39281 3.60752 3.68937 4.45313 4.55649 4.68454 4.72893 5.06862 5.10888 5.12517 5.22345 5.26322 5.34725 5.43080 5.47421 5.54440 5.66010 5.69776 5.77659 5.85327 5.88548 5.93298 6.00937 6.06194 6.10640 6.12377 6.22286 6.22870 6.25961 6.37565 6.40261 6.48528 6.54891 6.55312 6.62333 6.67819 6.72505 6.87077 7.04230 7.26551 7.47235 7.99433 8.13033 8.33982 8.68570 8.85448 9.54061 10.83095 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.027586 B = 0.004350 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.758978 B = 6434.949641 C = 6671.667393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.134 4.134 3 C -0.059 4.059 4 H 0.067 0.933 5 C -0.130 4.130 6 C -0.117 4.117 7 C -0.123 4.123 8 C -0.109 4.109 9 C -0.108 4.108 10 H 0.091 0.909 11 C 0.514 3.486 12 O -0.540 6.540 13 N -0.723 5.723 14 C 0.144 3.856 15 C 0.034 3.966 16 C -0.140 4.140 17 C -0.149 4.149 18 C -0.606 4.606 19 H 0.059 0.941 20 C 0.043 3.957 21 N -0.890 5.890 22 Si 1.049 2.951 23 H -0.299 1.299 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.046 0.954 29 H 0.050 0.950 30 H 0.094 0.906 31 H 0.057 0.943 32 H 0.095 0.905 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.395 0.605 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.020 0.980 44 H 0.044 0.956 45 H 0.053 0.947 46 H 0.027 0.973 47 H 0.040 0.960 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.121 8.349 -12.247 20.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.171 4.171 3 C -0.078 4.078 4 H 0.085 0.915 5 C -0.167 4.167 6 C -0.155 4.155 7 C -0.161 4.161 8 C -0.147 4.147 9 C -0.129 4.129 10 H 0.109 0.891 11 C 0.300 3.700 12 O -0.419 6.419 13 N -0.373 5.373 14 C 0.021 3.979 15 C 0.032 3.968 16 C -0.198 4.198 17 C -0.206 4.206 18 C -0.644 4.644 19 H 0.078 0.922 20 C -0.164 4.164 21 N -0.521 5.521 22 Si 0.882 3.118 23 H -0.227 1.227 24 H -0.215 1.215 25 H -0.205 1.205 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.112 0.888 31 H 0.075 0.925 32 H 0.113 0.887 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.229 0.771 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.039 0.961 44 H 0.063 0.937 45 H 0.072 0.928 46 H 0.046 0.954 47 H 0.059 0.941 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.036 7.919 -12.062 19.445 hybrid contribution -1.231 0.214 0.021 1.250 sum -14.267 8.132 -12.041 20.363 Atomic orbital electron populations 1.21776 0.96468 1.01070 1.01241 1.21837 0.95376 0.96479 1.03454 1.20876 0.92149 0.96575 0.98171 0.91511 1.21898 1.00244 0.95177 0.99390 1.21524 0.95436 0.97384 1.01112 1.21559 0.96368 1.00374 0.97768 1.21512 1.00724 0.93817 0.98612 1.21447 0.97100 0.96528 0.97834 0.89137 1.20443 0.82464 0.80001 0.87080 1.90531 1.59802 1.49109 1.42458 1.46396 1.06411 1.56457 1.28058 1.21458 0.94331 0.95109 0.86963 1.18652 0.90194 0.93194 0.94726 1.22209 1.01571 0.97696 0.98278 1.22360 0.99429 1.01115 0.97701 1.21643 0.93690 1.38525 1.10508 0.92238 1.25656 0.96532 0.93070 1.01124 1.70839 1.39016 1.43672 0.98615 0.84252 0.75306 0.76834 0.75407 1.22720 1.21548 1.20484 0.93238 0.92617 0.93533 0.93091 0.88778 0.92471 0.88710 0.92618 0.92373 0.92011 0.91624 0.91531 0.91144 0.77056 0.92509 0.92408 0.92604 0.96071 0.93689 0.92815 0.95360 0.94109 0.91837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.67 37.16 0.36 -1.18 16 2 C -0.13 -1.63 5.03 -26.73 -0.13 -1.77 16 3 C -0.06 -0.67 1.93 -90.62 -0.18 -0.85 16 4 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 5 C -0.13 -1.58 4.69 -26.73 -0.13 -1.70 16 6 C -0.12 -1.26 5.92 -26.73 -0.16 -1.42 16 7 C -0.12 -1.40 5.70 -26.73 -0.15 -1.55 16 8 C -0.11 -1.13 5.36 -26.73 -0.14 -1.27 16 9 C -0.11 -1.27 2.54 -91.77 -0.23 -1.50 16 10 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 11 C 0.51 8.01 5.36 -10.98 -0.06 7.95 16 12 O -0.54 -10.01 11.36 5.56 0.06 -9.94 16 13 N -0.72 -11.73 4.82 -60.29 -0.29 -12.02 16 14 C 0.14 2.91 4.50 -4.04 -0.02 2.89 16 15 C 0.03 0.74 0.50 -155.66 -0.08 0.66 16 16 C -0.14 -2.89 7.88 37.16 0.29 -2.60 16 17 C -0.15 -3.02 7.45 37.16 0.28 -2.74 16 18 C -0.61 -16.28 8.42 -34.44 -0.29 -16.57 16 19 H 0.06 1.75 7.99 -52.49 -0.42 1.33 16 20 C 0.04 1.21 5.08 -17.82 -0.09 1.12 16 21 N -0.89 -26.55 13.70 55.43 0.76 -25.79 16 22 Si 1.05 24.76 23.32 -169.99 -3.96 20.80 16 23 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.29 -6.47 6.80 56.52 0.38 -6.09 16 25 H -0.28 -5.95 5.62 56.52 0.32 -5.64 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.58 6.56 -51.93 -0.34 0.24 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 1.43 5.64 -51.93 -0.29 1.14 16 31 H 0.06 0.64 6.57 -51.93 -0.34 0.30 16 32 H 0.09 1.45 5.51 -51.93 -0.29 1.16 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.92 7.22 -51.93 -0.37 0.54 16 37 H 0.07 0.67 7.56 -51.92 -0.39 0.27 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.39 5.67 5.64 -40.82 -0.23 5.44 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 42 H 0.06 1.23 4.43 -51.93 -0.23 1.00 16 43 H 0.02 0.36 7.06 -51.93 -0.37 -0.01 16 44 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.05 1.11 8.13 -51.93 -0.42 0.69 16 46 H 0.03 0.47 6.68 -51.93 -0.35 0.12 16 47 H 0.04 0.85 2.89 -51.92 -0.15 0.70 16 48 H 0.27 8.08 8.73 -40.82 -0.36 7.72 16 LS Contribution 341.06 15.07 5.14 5.14 Total: -1.00 -28.89 341.06 -7.54 -36.43 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -8.52 Total: 5.91 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: -0.73 Total: -20.53 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.47 Total: -37.81 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.06 Total: -9.94 kcal Atomic # 14 Polarization: 24.76 SS G_CDS: -3.96 Total: 20.80 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.89 -7.54 -36.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458048145.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.780 kcal (2) G-P(sol) polarization free energy of solvation -28.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds