Wall clock time and date at job start Tue Mar 31 2020 05:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47260 * 2 1 4 4 H 1.09002 * 109.47497 * 305.00027 * 3 2 1 5 5 C 1.53006 * 109.47445 * 64.99802 * 3 2 1 6 6 C 1.52997 * 109.47445 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.47092 * 300.00075 * 6 5 3 8 8 C 1.53001 * 109.46963 * 60.00194 * 7 6 5 9 9 C 1.53000 * 109.46886 * 299.99499 * 8 7 6 10 10 H 1.09002 * 109.47398 * 300.00496 * 9 8 7 11 11 C 1.50703 * 109.46912 * 180.02562 * 9 8 7 12 12 O 1.21278 * 119.99818 * 240.00149 * 11 9 8 13 13 N 1.34777 * 119.99991 * 60.00288 * 11 9 8 14 14 C 1.46499 * 119.99824 * 180.02562 * 13 11 9 15 15 C 1.53002 * 109.47125 * 179.97438 * 14 13 11 16 16 C 1.53000 * 109.46911 * 299.99527 * 15 14 13 17 17 C 1.52996 * 109.46969 * 59.99789 * 15 14 13 18 18 C 1.50703 * 109.47292 * 179.97438 * 15 14 13 19 19 H 1.08003 * 119.99742 * 359.97438 * 18 15 14 20 20 C 1.37873 * 119.99873 * 179.97438 * 18 15 14 21 21 N 1.31509 * 120.00433 * 359.97438 * 20 18 15 22 22 Si 1.86801 * 119.99573 * 180.02562 * 20 18 15 23 23 H 1.48498 * 109.47341 * 90.00091 * 22 20 18 24 24 H 1.48498 * 109.46744 * 209.99899 * 22 20 18 25 25 H 1.48500 * 109.47304 * 329.99488 * 22 20 18 26 26 H 1.09000 * 109.46676 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46842 * 300.00328 * 1 2 3 28 28 H 1.09001 * 109.46578 * 60.00310 * 1 2 3 29 29 H 1.09001 * 109.47254 * 239.99866 * 2 1 3 30 30 H 1.09000 * 109.47102 * 119.99700 * 2 1 3 31 31 H 1.09001 * 109.46726 * 300.00265 * 5 3 2 32 32 H 1.09002 * 109.46589 * 59.99669 * 5 3 2 33 33 H 1.09002 * 109.47045 * 59.99942 * 6 5 3 34 34 H 1.09000 * 109.47140 * 179.97438 * 6 5 3 35 35 H 1.09000 * 109.46497 * 180.02562 * 7 6 5 36 36 H 1.09002 * 109.47067 * 299.99853 * 7 6 5 37 37 H 1.09001 * 109.46652 * 179.97438 * 8 7 6 38 38 H 1.08992 * 109.47514 * 59.99933 * 8 7 6 39 39 H 0.96998 * 120.00094 * 359.97438 * 13 11 9 40 40 H 1.09004 * 109.47041 * 299.99672 * 14 13 11 41 41 H 1.09002 * 109.47391 * 59.99855 * 14 13 11 42 42 H 1.09004 * 109.46724 * 60.00450 * 16 15 14 43 43 H 1.09001 * 109.47194 * 179.97438 * 16 15 14 44 44 H 1.08992 * 109.47852 * 300.00248 * 16 15 14 45 45 H 1.08996 * 109.47452 * 59.99938 * 17 15 14 46 46 H 1.09001 * 109.46997 * 180.02562 * 17 15 14 47 47 H 1.09000 * 109.47054 * 300.00097 * 17 15 14 48 48 H 0.97001 * 120.00323 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6353 2.1266 1.3073 6 6 2.1447 3.5693 1.3071 7 6 3.6696 3.5716 1.1811 8 6 4.0743 2.8876 -0.1263 9 6 3.5649 1.4449 -0.1259 10 1 3.9998 0.9061 0.7159 11 6 3.9640 0.7709 -1.4134 12 8 3.1127 0.3320 -2.1573 13 7 5.2671 0.6560 -1.7381 14 6 5.6551 0.0014 -2.9899 15 6 7.1799 0.0042 -3.1156 16 6 7.6889 1.4470 -3.1156 17 6 7.7904 -0.7521 -1.9340 18 6 7.5791 -0.6698 -4.4030 19 1 6.8210 -1.0614 -5.0652 20 6 8.9120 -0.7865 -4.7356 21 7 9.8351 -0.3093 -3.9296 22 14 9.4067 -1.6214 -6.3317 23 1 9.4805 -0.6104 -7.4170 24 1 10.7346 -2.2643 -6.1631 25 1 8.3984 -2.6531 -6.6840 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.5489 2.1253 1.3969 32 1 2.0698 1.5875 2.1491 33 1 1.7098 4.1080 0.4652 34 1 1.8560 4.0568 2.2382 35 1 4.0325 4.5994 1.1814 36 1 4.1045 3.0329 2.0229 37 1 5.1606 2.8897 -0.2162 38 1 3.6394 3.4263 -0.9680 39 1 5.9479 1.0074 -1.1432 40 1 5.2920 -1.0264 -2.9901 41 1 5.2205 0.5404 -3.8317 42 1 7.4003 1.9341 -2.1842 43 1 8.7753 1.4490 -3.2047 44 1 7.2540 1.9858 -3.9573 45 1 7.4277 -1.7800 -1.9340 46 1 8.8767 -0.7497 -2.0233 47 1 7.5017 -0.2650 -1.0026 48 1 10.7729 -0.3917 -4.1634 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458048146.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:45 Heat of formation + Delta-G solvation = -82.715518 kcal Electronic energy + Delta-G solvation = -23486.369413 eV Core-core repulsion = 20346.374395 eV Total energy + Delta-G solvation = -3139.995018 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.19996 -37.85543 -36.23971 -34.04726 -33.08974 -31.44686 -30.42149 -29.02855 -25.72639 -25.72091 -25.05621 -23.76708 -23.07548 -20.65955 -20.26868 -19.54351 -18.74610 -16.99098 -15.84416 -15.38813 -14.96110 -14.82952 -14.74444 -14.45683 -14.03877 -13.82268 -13.39519 -13.26363 -12.93537 -12.65892 -12.51091 -12.34769 -12.12327 -11.58451 -11.53932 -11.40992 -11.20762 -11.15343 -11.07119 -10.86384 -10.77034 -10.68753 -10.48679 -10.39321 -10.29064 -10.17799 -10.00126 -9.62570 -9.38852 -8.99110 -8.76539 -8.42571 -8.25647 -6.01825 -4.11829 3.11326 3.28355 3.35360 3.39274 3.80577 4.40450 4.57375 4.64306 4.73004 5.02450 5.13028 5.24945 5.27890 5.32007 5.34392 5.37121 5.42941 5.51550 5.65848 5.69992 5.77094 5.95627 5.97970 6.01269 6.04102 6.10440 6.17972 6.23932 6.26399 6.30561 6.34861 6.51667 6.53711 6.63656 6.81754 6.82830 6.94958 7.02485 7.10097 7.36654 7.56030 7.69696 8.01256 8.09649 8.18805 8.39332 8.78220 8.89377 9.54014 10.99528 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.028330 B = 0.003843 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.116913 B = 7283.317008 C = 7917.601954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C -0.062 4.062 4 H 0.074 0.926 5 C -0.116 4.116 6 C -0.121 4.121 7 C -0.117 4.117 8 C -0.111 4.111 9 C -0.103 4.103 10 H 0.091 0.909 11 C 0.507 3.493 12 O -0.548 6.548 13 N -0.717 5.717 14 C 0.132 3.868 15 C 0.055 3.945 16 C -0.130 4.130 17 C -0.130 4.130 18 C -0.505 4.505 19 H 0.057 0.943 20 C 0.066 3.934 21 N -0.886 5.886 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.094 0.906 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.397 0.603 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.006 0.994 43 H 0.085 0.915 44 H 0.026 0.974 45 H 0.026 0.974 46 H 0.085 0.915 47 H 0.006 0.994 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.887 6.402 12.032 18.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C -0.081 4.081 4 H 0.093 0.907 5 C -0.153 4.153 6 C -0.159 4.159 7 C -0.154 4.154 8 C -0.149 4.149 9 C -0.125 4.125 10 H 0.109 0.891 11 C 0.293 3.707 12 O -0.427 6.427 13 N -0.367 5.367 14 C 0.009 3.991 15 C 0.055 3.945 16 C -0.187 4.187 17 C -0.188 4.188 18 C -0.544 4.544 19 H 0.075 0.925 20 C -0.135 4.135 21 N -0.525 5.525 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.112 0.888 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.232 0.768 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.025 0.975 43 H 0.104 0.896 44 H 0.045 0.955 45 H 0.045 0.955 46 H 0.104 0.896 47 H 0.025 0.975 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.269 6.086 11.487 17.875 hybrid contribution 0.735 -0.292 -0.583 0.982 sum -11.534 5.794 10.903 16.897 Atomic orbital electron populations 1.21753 0.96428 1.01038 1.01183 1.21837 0.95563 0.96376 1.03328 1.20909 0.92663 0.96828 0.97722 0.90712 1.21667 1.00669 0.95417 0.97550 1.21562 0.95791 0.96982 1.01517 1.21524 0.95970 1.00470 0.97481 1.21522 1.00984 0.93943 0.98451 1.21386 0.97712 0.96879 0.96500 0.89070 1.20549 0.82893 0.79618 0.87617 1.90588 1.49940 1.49655 1.52517 1.46354 1.06709 1.59205 1.24419 1.21684 0.98257 0.95736 0.83391 1.18356 0.87289 0.93539 0.95352 1.21817 1.04538 0.96314 0.96056 1.21819 1.04594 0.97642 0.94705 1.20991 0.92017 1.37278 1.04119 0.92491 1.24873 0.96512 0.95308 0.96796 1.69801 1.00405 1.46003 1.36262 0.86581 0.77845 0.79728 0.83781 1.20723 1.21272 1.19911 0.93277 0.93269 0.92905 0.88819 0.93110 0.91682 0.92099 0.92018 0.92230 0.91829 0.91847 0.91295 0.91425 0.76828 0.92867 0.92875 0.97543 0.89640 0.95504 0.95488 0.89646 0.97538 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.67 37.16 0.36 -1.26 16 2 C -0.13 -1.71 5.14 -26.73 -0.14 -1.85 16 3 C -0.06 -0.75 1.36 -90.62 -0.12 -0.87 16 4 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 5 C -0.12 -1.10 4.96 -26.73 -0.13 -1.23 16 6 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 7 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 8 C -0.11 -1.24 5.10 -26.73 -0.14 -1.38 16 9 C -0.10 -1.31 2.06 -91.77 -0.19 -1.50 16 10 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 11 C 0.51 8.58 6.83 -10.98 -0.08 8.50 16 12 O -0.55 -11.01 13.67 5.56 0.08 -10.94 16 13 N -0.72 -12.65 4.85 -60.29 -0.29 -12.94 16 14 C 0.13 2.81 4.50 -4.04 -0.02 2.79 16 15 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 16 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 17 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 18 C -0.51 -13.27 8.01 -34.44 -0.28 -13.54 16 19 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 20 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 21 N -0.89 -23.58 9.35 55.43 0.52 -23.06 16 22 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.46 6.56 -51.93 -0.34 0.12 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.09 1.50 5.42 -51.93 -0.28 1.22 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.58 6.56 -51.93 -0.34 0.24 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.76 7.56 -51.93 -0.39 0.37 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.40 6.39 5.58 -40.82 -0.23 6.16 16 40 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 43 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 47 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 48 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 LS Contribution 355.72 15.07 5.36 5.36 Total: -1.00 -27.38 355.72 -8.78 -36.16 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -8.81 Total: 4.84 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: -0.61 Total: -15.15 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.23 Total: -36.00 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.08 Total: -10.94 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -27.38 -8.78 -36.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458048146.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.558 kcal (2) G-P(sol) polarization free energy of solvation -27.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds