Wall clock time and date at job start Tue Mar 31 2020 05:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47147 * 2 1 4 4 C 1.53006 * 109.47056 * 183.09996 * 3 2 1 5 5 H 1.08997 * 109.47537 * 306.11774 * 4 3 2 6 6 C 1.52997 * 109.47173 * 66.12267 * 4 3 2 7 7 C 1.52995 * 109.47495 * 186.91582 * 6 4 3 8 8 C 1.52997 * 109.47467 * 183.80647 * 7 6 4 9 9 C 1.53000 * 109.47252 * 179.97438 * 8 7 6 10 10 C 1.53007 * 109.47077 * 60.00265 * 9 8 7 11 11 C 1.53002 * 109.46912 * 300.00496 * 10 9 8 12 12 C 1.52995 * 109.47869 * 59.99589 * 11 10 9 13 13 C 1.50708 * 109.47017 * 186.11869 * 4 3 2 14 14 O 1.21290 * 120.00190 * 252.10950 * 13 4 3 15 15 N 1.34778 * 119.99506 * 72.11141 * 13 4 3 16 16 C 1.46502 * 119.99713 * 183.47863 * 15 13 4 17 17 C 1.37098 * 120.00281 * 3.48070 * 15 13 4 18 18 H 1.07999 * 120.00003 * 5.07597 * 17 15 13 19 19 C 1.38957 * 119.99851 * 185.08206 * 17 15 13 20 20 N 1.31406 * 119.99816 * 7.69212 * 19 17 15 21 21 Si 1.86796 * 119.99696 * 187.69078 * 19 17 15 22 22 H 1.48494 * 109.47288 * 60.00115 * 21 19 17 23 23 H 1.48504 * 109.46906 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47171 * 299.99664 * 21 19 17 25 25 H 1.09004 * 109.46669 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47094 * 299.99225 * 1 2 3 27 27 H 1.08999 * 109.47149 * 60.00080 * 1 2 3 28 28 H 1.09009 * 109.47195 * 240.00133 * 2 1 3 29 29 H 1.09005 * 109.47376 * 120.00793 * 2 1 3 30 30 H 1.09003 * 109.47058 * 63.10663 * 3 2 1 31 31 H 1.09001 * 109.47474 * 303.10189 * 3 2 1 32 32 H 1.09003 * 109.47023 * 66.91427 * 6 4 3 33 33 H 1.08999 * 109.46888 * 306.92035 * 6 4 3 34 34 H 1.09005 * 109.46891 * 303.81231 * 7 6 4 35 35 H 1.08999 * 109.46666 * 60.00568 * 8 7 6 36 36 H 1.08995 * 109.47508 * 300.00071 * 8 7 6 37 37 H 1.09005 * 109.47218 * 300.00652 * 9 8 7 38 38 H 1.09001 * 109.47392 * 180.02562 * 9 8 7 39 39 H 1.09005 * 109.46874 * 59.99571 * 10 9 8 40 40 H 1.08994 * 109.47117 * 179.97438 * 10 9 8 41 41 H 1.08998 * 109.46953 * 179.97438 * 11 10 9 42 42 H 1.09005 * 109.46596 * 299.99245 * 11 10 9 43 43 H 1.08992 * 109.47373 * 180.02562 * 12 11 10 44 44 H 1.09005 * 109.46891 * 59.99722 * 12 11 10 45 45 H 1.09002 * 109.46832 * 355.06697 * 16 15 13 46 46 H 1.09003 * 109.46831 * 115.05799 * 16 15 13 47 47 H 1.08995 * 109.47658 * 235.06395 * 16 15 13 48 48 H 0.96998 * 119.99633 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5680 1.4431 -0.0780 5 1 3.9730 0.8227 0.7214 6 6 4.0098 0.8833 -1.4316 7 6 5.5312 0.7225 -1.4451 8 6 5.9823 0.2530 -2.8296 9 6 7.5038 0.0928 -2.8432 10 6 7.9172 -0.9415 -1.7942 11 6 7.4660 -0.4720 -0.4096 12 6 5.9445 -0.3118 -0.3960 13 6 4.0781 2.8532 0.0731 14 8 4.5359 3.4385 -0.8855 15 7 4.0255 3.4637 1.2735 16 6 4.4503 4.8597 1.4045 17 6 3.5745 2.7785 2.3720 18 1 3.3391 1.7274 2.2936 19 6 3.4202 3.4364 3.5861 20 7 3.5597 4.7416 3.6485 21 14 3.0143 2.4655 5.1295 22 1 4.0922 1.4782 5.3910 23 1 2.9034 3.3938 6.2833 24 1 1.7251 1.7529 4.9412 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8901 29 1 1.8934 -0.5140 0.8899 30 1 1.7228 1.9399 0.9166 31 1 1.6320 1.9721 -0.8609 32 1 3.7099 1.5693 -2.2239 33 1 3.5404 -0.0869 -1.5942 34 1 5.9998 1.6796 -1.2154 35 1 5.6883 0.9901 -3.5768 36 1 5.5138 -0.7040 -3.0592 37 1 7.9720 1.0501 -2.6137 38 1 7.8253 -0.2413 -3.8297 39 1 7.4489 -1.8987 -2.0236 40 1 9.0011 -1.0559 -1.8042 41 1 7.7601 -1.2090 0.3376 42 1 7.9343 0.4852 -0.1802 43 1 5.6233 0.0231 0.5902 44 1 5.4763 -1.2690 -0.6255 45 1 4.8557 5.2067 0.4540 46 1 3.5944 5.4755 1.6809 47 1 5.2168 4.9354 2.1757 48 1 3.4523 5.2008 4.4961 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000500030857.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:22 Heat of formation + Delta-G solvation = -76.210850 kcal Electronic energy + Delta-G solvation = -24033.736067 eV Core-core repulsion = 20894.023112 eV Total energy + Delta-G solvation = -3139.712955 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.36339 -37.87641 -35.39588 -34.70661 -32.43589 -31.35941 -30.50315 -29.62101 -26.43861 -25.44772 -24.66672 -22.72187 -22.16681 -20.96338 -20.09398 -19.39006 -18.76062 -16.59922 -16.19867 -15.35581 -14.61212 -14.43697 -14.29860 -14.01448 -13.92289 -13.79710 -13.61166 -13.10209 -12.83682 -12.51706 -12.38254 -11.91161 -11.76969 -11.63159 -11.43830 -11.42135 -11.31480 -10.99673 -10.86998 -10.81165 -10.69980 -10.61181 -10.51554 -10.35554 -10.30870 -10.19329 -10.00995 -9.81119 -9.53365 -9.40283 -9.06617 -8.15723 -7.81812 -6.24396 -3.83760 3.11244 3.19061 3.19899 3.98151 4.08246 4.88527 4.93885 5.02094 5.04094 5.12769 5.34039 5.41824 5.44708 5.51600 5.55835 5.68725 5.74930 5.80129 5.80860 5.90098 5.94046 5.96146 6.12283 6.13100 6.22433 6.23330 6.25031 6.33698 6.34933 6.39369 6.44865 6.48632 6.53169 6.58687 6.66347 6.68505 6.77846 6.96052 6.99444 7.03989 7.11865 7.28455 7.43109 7.55175 7.81049 8.44868 9.12068 9.62991 10.02695 10.68861 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.014068 B = 0.005933 C = 0.005275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.828606 B = 4718.431548 C = 5306.358553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.111 4.111 4 C -0.089 4.089 5 H 0.084 0.916 6 C -0.091 4.091 7 C -0.087 4.087 8 C -0.109 4.109 9 C -0.119 4.119 10 C -0.116 4.116 11 C -0.119 4.119 12 C -0.116 4.116 13 C 0.456 3.544 14 O -0.613 6.613 15 N -0.446 5.446 16 C 0.122 3.878 17 C -0.324 4.324 18 H 0.101 0.899 19 C 0.032 3.968 20 N -0.877 5.877 21 Si 0.920 3.080 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.272 1.272 25 H 0.047 0.953 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.061 0.939 43 H 0.066 0.934 44 H 0.054 0.946 45 H 0.033 0.967 46 H 0.070 0.930 47 H 0.053 0.947 48 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.256 -10.394 -6.142 12.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.149 4.149 4 C -0.110 4.110 5 H 0.102 0.898 6 C -0.129 4.129 7 C -0.105 4.105 8 C -0.147 4.147 9 C -0.156 4.156 10 C -0.154 4.154 11 C -0.157 4.157 12 C -0.153 4.153 13 C 0.245 3.755 14 O -0.501 6.501 15 N -0.164 5.164 16 C -0.021 4.021 17 C -0.452 4.452 18 H 0.118 0.882 19 C -0.171 4.171 20 N -0.516 5.516 21 Si 0.747 3.253 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.198 1.198 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.052 0.948 46 H 0.088 0.912 47 H 0.071 0.929 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.469 -9.912 -6.404 11.892 hybrid contribution -0.248 -0.368 1.122 1.206 sum 1.221 -10.281 -5.282 11.622 Atomic orbital electron populations 1.21764 0.96501 1.00761 1.01768 1.21579 0.95234 0.97579 1.01586 1.21543 0.94009 0.96139 1.03166 1.21092 0.96033 0.95619 0.98227 0.89778 1.21446 0.94821 0.99540 0.97101 1.21165 0.96100 0.99460 0.93779 1.21529 0.94960 1.00517 0.97682 1.21527 0.96712 0.99328 0.98074 1.21515 0.99797 0.98588 0.95469 1.21524 0.96761 1.01081 0.96317 1.21651 0.94973 0.98807 0.99887 1.19952 0.84045 0.88673 0.82841 1.90485 1.52614 1.67771 1.39214 1.43705 1.54560 1.11346 1.06762 1.21489 1.00647 0.82534 0.97462 1.19698 1.43270 0.94837 0.87424 0.88167 1.25266 0.96890 0.95636 0.99339 1.70185 1.48277 1.06951 1.26229 0.86092 0.79100 0.79164 0.80933 1.19914 1.20848 1.19782 0.93423 0.92692 0.93078 0.92237 0.92223 0.89949 0.92651 0.91605 0.92624 0.89790 0.92264 0.92773 0.92064 0.92757 0.92452 0.92753 0.92611 0.92059 0.91549 0.92697 0.94811 0.91170 0.92862 0.92316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.91 37.16 0.37 -1.58 16 2 C -0.12 -1.76 5.78 -26.74 -0.15 -1.92 16 3 C -0.11 -1.98 4.37 -26.73 -0.12 -2.09 16 4 C -0.09 -1.71 1.20 -91.77 -0.11 -1.82 16 5 H 0.08 1.63 5.08 -51.93 -0.26 1.36 16 6 C -0.09 -1.56 3.73 -26.74 -0.10 -1.66 16 7 C -0.09 -1.43 2.02 -90.62 -0.18 -1.61 16 8 C -0.11 -1.53 5.20 -26.73 -0.14 -1.67 16 9 C -0.12 -1.51 5.92 -26.73 -0.16 -1.67 16 10 C -0.12 -1.39 5.92 -26.73 -0.16 -1.55 16 11 C -0.12 -1.62 5.92 -26.73 -0.16 -1.78 16 12 C -0.12 -1.73 4.95 -26.73 -0.13 -1.86 16 13 C 0.46 10.93 6.36 -10.98 -0.07 10.86 16 14 O -0.61 -16.03 13.99 5.55 0.08 -15.95 16 15 N -0.45 -11.40 3.03 -122.19 -0.37 -11.77 16 16 C 0.12 3.12 8.87 59.85 0.53 3.65 16 17 C -0.32 -8.12 8.16 -14.93 -0.12 -8.24 16 18 H 0.10 2.35 5.54 -52.49 -0.29 2.06 16 19 C 0.03 0.81 5.40 -17.47 -0.09 0.71 16 20 N -0.88 -22.93 9.59 55.50 0.53 -22.40 16 21 Si 0.92 19.46 29.56 -169.99 -5.02 14.43 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.80 6.34 -51.92 -0.33 0.47 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.08 1.66 6.51 -51.93 -0.34 1.32 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 1.22 7.71 -51.93 -0.40 0.82 16 33 H 0.06 0.82 6.26 -51.93 -0.33 0.50 16 34 H 0.08 1.69 6.50 -51.93 -0.34 1.36 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.07 1.10 6.39 -51.93 -0.33 0.77 16 44 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.03 0.85 6.91 -51.93 -0.36 0.49 16 46 H 0.07 1.86 6.84 -51.93 -0.36 1.50 16 47 H 0.05 1.39 7.31 -51.93 -0.38 1.01 16 48 H 0.27 6.64 8.31 -40.82 -0.34 6.31 16 LS Contribution 354.88 15.07 5.35 5.35 Total: -1.00 -27.40 354.88 -9.00 -36.40 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -8.76 Total: 6.16 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -0.80 Total: -12.22 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: 0.16 Total: -34.17 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: 0.08 Total: -15.95 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.43 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -27.40 -9.00 -36.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000500030857.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.816 kcal (2) G-P(sol) polarization free energy of solvation -27.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds