Wall clock time and date at job start Tue Mar 31 2020 05:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47043 * 2 1 4 4 C 1.52998 * 109.47008 * 184.25525 * 3 2 1 5 5 H 1.08998 * 109.47291 * 306.17252 * 4 3 2 6 6 C 1.52998 * 109.47415 * 186.17232 * 4 3 2 7 7 C 1.52999 * 109.47179 * 65.33912 * 6 4 3 8 8 C 1.53008 * 109.47052 * 66.24874 * 7 6 4 9 9 C 1.52998 * 109.47087 * 180.02562 * 8 7 6 10 10 C 1.53005 * 109.46820 * 299.99423 * 9 8 7 11 11 C 1.52997 * 109.46933 * 60.00732 * 10 9 8 12 12 C 1.52998 * 109.47552 * 186.24749 * 7 6 4 13 13 C 1.50698 * 109.47255 * 66.17315 * 4 3 2 14 14 O 1.21295 * 119.99921 * 21.80938 * 13 4 3 15 15 N 1.34782 * 120.00532 * 201.80674 * 13 4 3 16 16 C 1.46496 * 119.99521 * 4.45555 * 15 13 4 17 17 C 1.37090 * 119.99873 * 184.45420 * 15 13 4 18 18 H 1.07997 * 120.00910 * 3.39510 * 17 15 13 19 19 C 1.38952 * 119.99470 * 183.39366 * 17 15 13 20 20 N 1.31410 * 120.00324 * 7.91043 * 19 17 15 21 21 Si 1.86802 * 119.99943 * 187.90794 * 19 17 15 22 22 H 1.48504 * 109.47030 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47431 * 120.00265 * 21 19 17 24 24 H 1.48504 * 109.47287 * 240.00012 * 21 19 17 25 25 H 1.09000 * 109.47496 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47467 * 300.00308 * 1 2 3 27 27 H 1.09003 * 109.47069 * 59.99869 * 1 2 3 28 28 H 1.09000 * 109.47467 * 239.99691 * 2 1 3 29 29 H 1.09007 * 109.46744 * 119.99744 * 2 1 3 30 30 H 1.09006 * 109.47111 * 64.26087 * 3 2 1 31 31 H 1.09000 * 109.47627 * 304.25769 * 3 2 1 32 32 H 1.09003 * 109.47070 * 305.34374 * 6 4 3 33 33 H 1.08998 * 109.47823 * 185.34066 * 6 4 3 34 34 H 1.08999 * 109.47429 * 306.25118 * 7 6 4 35 35 H 1.08999 * 109.46804 * 59.99862 * 8 7 6 36 36 H 1.09005 * 109.46740 * 300.00213 * 8 7 6 37 37 H 1.08997 * 109.47101 * 59.99625 * 9 8 7 38 38 H 1.08998 * 109.46987 * 180.02562 * 9 8 7 39 39 H 1.08997 * 109.46985 * 180.02562 * 10 9 8 40 40 H 1.08993 * 109.47722 * 300.00399 * 10 9 8 41 41 H 1.08997 * 109.47616 * 179.97438 * 11 10 9 42 42 H 1.08997 * 109.47660 * 59.99386 * 11 10 9 43 43 H 1.09003 * 109.46782 * 300.00188 * 12 7 6 44 44 H 1.08998 * 109.47362 * 59.99925 * 12 7 6 45 45 H 1.09000 * 109.47463 * 355.00156 * 16 15 13 46 46 H 1.08995 * 109.47316 * 115.00560 * 16 15 13 47 47 H 1.09002 * 109.46915 * 235.00956 * 16 15 13 48 48 H 0.97004 * 120.00274 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5662 1.4438 -0.1070 5 1 3.9861 0.8172 0.6798 6 6 4.0871 2.8740 0.0474 7 6 3.7874 3.3761 1.4613 8 6 4.6009 2.5664 2.4731 9 6 4.3008 3.0680 3.8870 10 6 4.6794 4.5466 3.9947 11 6 3.8659 5.3562 2.9830 12 6 4.1663 4.8545 1.5686 13 6 3.9759 0.9026 -1.4525 14 8 3.1919 0.9208 -2.3778 15 7 5.2134 0.3983 -1.6277 16 6 6.1268 0.2862 -0.4878 17 6 5.6174 -0.0098 -2.8726 18 1 4.9648 0.1232 -3.7227 19 6 6.8666 -0.5946 -3.0405 20 7 7.5963 -0.8987 -1.9907 21 14 7.5089 -0.9485 -4.7586 22 1 6.5033 -0.5156 -5.7619 23 1 8.7767 -0.2065 -4.9757 24 1 7.7570 -2.4054 -4.9040 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.7403 1.9338 0.9257 31 1 1.6157 1.9779 -0.8494 32 1 3.5951 3.5204 -0.6795 33 1 5.1636 2.8892 -0.1229 34 1 2.7245 3.2572 1.6714 35 1 5.6638 2.6852 2.2630 36 1 4.3310 1.5131 2.3966 37 1 3.2378 2.9489 4.0968 38 1 4.8806 2.4915 4.6078 39 1 4.4660 4.9038 5.0021 40 1 5.7423 4.6657 3.7848 41 1 4.1352 6.4096 3.0599 42 1 2.8029 5.2371 3.1927 43 1 5.2293 4.9733 1.3585 44 1 3.5868 5.4314 0.8479 45 1 5.6676 0.7378 0.3916 46 1 6.3338 -0.7655 -0.2901 47 1 7.0587 0.8032 -0.7168 48 1 8.4685 -1.3066 -2.1080 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000500030859.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:24 Heat of formation + Delta-G solvation = -72.997820 kcal Electronic energy + Delta-G solvation = -23792.805580 eV Core-core repulsion = 20653.231953 eV Total energy + Delta-G solvation = -3139.573627 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.46754 -38.11728 -35.40512 -34.33429 -32.90054 -31.41843 -30.70873 -29.48770 -26.38717 -25.75907 -24.55185 -22.97145 -22.37456 -21.05206 -20.59480 -19.44437 -18.13197 -16.86385 -16.41446 -15.32741 -14.74072 -14.63835 -14.23954 -14.12405 -14.03363 -13.89236 -13.63047 -13.30297 -12.84120 -12.51576 -12.33030 -12.18948 -11.96676 -11.75798 -11.70229 -11.36095 -11.34772 -11.06875 -10.99702 -10.95974 -10.83808 -10.74432 -10.38681 -10.35128 -10.29665 -10.13223 -9.98673 -9.92382 -9.80690 -9.67470 -8.98329 -8.15966 -7.76016 -6.17719 -3.73224 3.17395 3.27465 3.34907 3.98046 4.16857 4.71511 4.77528 4.81552 5.00197 5.16728 5.18445 5.29564 5.32687 5.47088 5.50603 5.54680 5.56712 5.58507 5.59782 5.70023 5.77434 5.89315 5.95202 5.98468 6.02240 6.09455 6.13539 6.18006 6.21763 6.26835 6.27406 6.33349 6.38910 6.40274 6.47564 6.53641 6.54344 6.64615 6.78540 6.90033 6.91383 7.14231 7.46985 7.62491 8.15597 8.57429 9.27880 9.55505 10.10281 10.76934 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015523 B = 0.005196 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.374049 B = 5387.272283 C = 6484.933543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.125 4.125 3 C -0.095 4.095 4 C -0.099 4.099 5 H 0.081 0.919 6 C -0.101 4.101 7 C -0.085 4.085 8 C -0.117 4.117 9 C -0.118 4.118 10 C -0.119 4.119 11 C -0.118 4.118 12 C -0.115 4.115 13 C 0.447 3.553 14 O -0.595 6.595 15 N -0.451 5.451 16 C 0.114 3.886 17 C -0.297 4.297 18 H 0.103 0.897 19 C 0.024 3.976 20 N -0.890 5.890 21 Si 0.927 3.073 22 H -0.269 1.269 23 H -0.282 1.282 24 H -0.282 1.282 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.027 0.973 46 H 0.070 0.930 47 H 0.060 0.940 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.344 7.921 12.285 15.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.163 4.163 3 C -0.133 4.133 4 C -0.121 4.121 5 H 0.099 0.901 6 C -0.139 4.139 7 C -0.104 4.104 8 C -0.155 4.155 9 C -0.156 4.156 10 C -0.157 4.157 11 C -0.155 4.155 12 C -0.152 4.152 13 C 0.235 3.765 14 O -0.481 6.481 15 N -0.169 5.169 16 C -0.030 4.030 17 C -0.425 4.425 18 H 0.120 0.880 19 C -0.177 4.177 20 N -0.532 5.532 21 Si 0.754 3.246 22 H -0.193 1.193 23 H -0.208 1.208 24 H -0.208 1.208 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.045 0.955 46 H 0.089 0.911 47 H 0.079 0.921 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.501 7.825 11.843 15.223 hybrid contribution 0.684 -0.315 -0.707 1.033 sum -4.817 7.509 11.136 14.269 Atomic orbital electron populations 1.21719 0.96599 1.00845 1.01127 1.21528 0.95120 0.97491 1.02162 1.21422 0.93869 0.96850 1.01167 1.21254 0.96612 0.96951 0.97244 0.90061 1.21540 1.01430 0.95120 0.95848 1.21222 1.00102 0.94232 0.94822 1.21660 1.00354 0.99662 0.93809 1.21529 1.01104 0.95674 0.97273 1.21534 1.00111 0.95543 0.98485 1.21528 0.99980 0.98769 0.95261 1.21597 1.01537 0.95906 0.96196 1.19895 0.82510 0.84372 0.89729 1.90484 1.51678 1.62201 1.43744 1.43727 1.11128 1.53327 1.08705 1.21784 0.92717 1.02688 0.85768 1.19845 1.00385 1.36208 0.86032 0.87951 1.25267 0.96494 0.96783 0.99149 1.70161 1.12413 1.42440 1.28184 0.85844 0.78712 0.77910 0.82155 1.19335 1.20758 1.20835 0.93406 0.93509 0.92829 0.90898 0.93051 0.92490 0.91258 0.91834 0.91580 0.90965 0.91836 0.91578 0.92272 0.92338 0.92620 0.92109 0.92505 0.92252 0.92017 0.92176 0.95466 0.91137 0.92097 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 37.16 0.37 -1.66 16 2 C -0.13 -2.09 5.78 -26.74 -0.15 -2.25 16 3 C -0.10 -1.58 4.25 -26.73 -0.11 -1.70 16 4 C -0.10 -1.81 1.20 -91.77 -0.11 -1.92 16 5 H 0.08 1.43 4.63 -51.93 -0.24 1.18 16 6 C -0.10 -1.63 3.89 -26.73 -0.10 -1.73 16 7 C -0.09 -1.08 2.07 -90.62 -0.19 -1.27 16 8 C -0.12 -1.42 4.99 -26.73 -0.13 -1.55 16 9 C -0.12 -1.21 5.92 -26.73 -0.16 -1.37 16 10 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16 11 C -0.12 -1.15 5.92 -26.71 -0.16 -1.31 16 12 C -0.11 -1.30 5.21 -26.71 -0.14 -1.44 16 13 C 0.45 10.81 6.02 -10.98 -0.07 10.75 16 14 O -0.60 -16.41 14.77 5.54 0.08 -16.32 16 15 N -0.45 -11.66 3.03 -122.20 -0.37 -12.03 16 16 C 0.11 2.61 8.36 59.84 0.50 3.11 16 17 C -0.30 -8.40 9.56 -14.94 -0.14 -8.54 16 18 H 0.10 3.06 7.19 -52.49 -0.38 2.68 16 19 C 0.02 0.64 5.40 -17.47 -0.09 0.55 16 20 N -0.89 -23.74 9.55 55.50 0.53 -23.21 16 21 Si 0.93 21.18 29.56 -169.99 -5.02 16.15 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.07 1.48 6.77 -51.93 -0.35 1.13 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.80 6.20 -51.93 -0.32 0.47 16 31 H 0.07 1.27 7.65 -51.93 -0.40 0.88 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.07 1.14 7.54 -51.93 -0.39 0.75 16 34 H 0.07 0.90 6.20 -51.93 -0.32 0.58 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.84 6.50 -51.93 -0.34 0.50 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.03 0.52 5.00 -51.93 -0.26 0.26 16 46 H 0.07 1.73 6.94 -51.93 -0.36 1.37 16 47 H 0.06 1.47 7.20 -51.93 -0.37 1.10 16 48 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 356.76 15.07 5.38 5.38 Total: -1.00 -29.67 356.76 -9.05 -38.72 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -8.79 Total: 2.94 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -0.85 Total: -11.63 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: 0.16 Total: -35.24 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: 0.08 Total: -16.32 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.67 -9.05 -38.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000500030859.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.280 kcal (2) G-P(sol) polarization free energy of solvation -29.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds