Wall clock time and date at job start Tue Mar 31 2020 05:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47417 * 2 1 4 4 C 1.52998 * 109.47496 * 120.00480 * 2 1 3 5 5 H 1.08999 * 109.47426 * 184.99922 * 4 2 1 6 6 C 1.53005 * 109.47339 * 64.99584 * 4 2 1 7 7 C 1.53001 * 109.46689 * 66.43285 * 6 4 2 8 8 C 1.52996 * 109.46730 * 185.52905 * 7 6 4 9 9 C 1.53006 * 109.47113 * 180.02562 * 8 7 6 10 10 C 1.53002 * 109.46947 * 59.99946 * 9 8 7 11 11 C 1.53001 * 109.47385 * 300.00286 * 10 9 8 12 12 C 1.53000 * 109.47208 * 59.99660 * 11 10 9 13 13 C 1.50711 * 109.46880 * 305.00031 * 4 2 1 14 14 O 1.21283 * 120.00059 * 82.79955 * 13 4 2 15 15 N 1.34776 * 119.99552 * 262.80097 * 13 4 2 16 16 C 1.46497 * 120.00410 * 6.01848 * 15 13 4 17 17 C 1.37098 * 119.99723 * 186.02660 * 15 13 4 18 18 H 1.08001 * 119.99729 * 327.43376 * 17 15 13 19 19 C 1.38952 * 120.00241 * 147.43467 * 17 15 13 20 20 N 1.31413 * 119.99846 * 163.58262 * 19 17 15 21 21 Si 1.86798 * 119.99810 * 343.58609 * 19 17 15 22 22 H 1.48499 * 109.47105 * 86.33305 * 21 19 17 23 23 H 1.48501 * 109.46912 * 206.32748 * 21 19 17 24 24 H 1.48498 * 109.47268 * 326.33050 * 21 19 17 25 25 H 1.09003 * 109.46614 * 303.06145 * 1 2 3 26 26 H 1.08999 * 109.46842 * 63.05924 * 1 2 3 27 27 H 1.09000 * 109.46791 * 183.06458 * 1 2 3 28 28 H 1.09001 * 109.47189 * 240.00476 * 2 1 3 29 29 H 1.08995 * 109.47788 * 181.79673 * 3 2 1 30 30 H 1.09000 * 109.47377 * 301.80096 * 3 2 1 31 31 H 1.09010 * 109.46672 * 61.79748 * 3 2 1 32 32 H 1.09000 * 109.46517 * 306.43739 * 6 4 2 33 33 H 1.08992 * 109.46924 * 186.43691 * 6 4 2 34 34 H 1.08994 * 109.47386 * 305.52914 * 7 6 4 35 35 H 1.08999 * 109.47384 * 60.00125 * 8 7 6 36 36 H 1.09001 * 109.47530 * 300.00346 * 8 7 6 37 37 H 1.08993 * 109.47004 * 180.02562 * 9 8 7 38 38 H 1.09001 * 109.46928 * 300.00376 * 9 8 7 39 39 H 1.09001 * 109.46956 * 60.00447 * 10 9 8 40 40 H 1.09004 * 109.46976 * 180.02562 * 10 9 8 41 41 H 1.09008 * 109.46814 * 299.99947 * 11 10 9 42 42 H 1.08995 * 109.47126 * 180.02562 * 11 10 9 43 43 H 1.08997 * 109.47179 * 179.97438 * 12 11 10 44 44 H 1.09001 * 109.46753 * 60.00072 * 12 11 10 45 45 H 1.09001 * 109.46883 * 5.25751 * 16 15 13 46 46 H 1.09008 * 109.46940 * 125.25079 * 16 15 13 47 47 H 1.08998 * 109.47559 * 245.25678 * 16 15 13 48 48 H 0.96996 * 119.99426 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 3.1264 -0.6444 1.2950 6 6 1.6353 -2.1956 1.1879 7 6 2.3722 -2.8792 0.0343 8 6 1.8661 -4.3153 -0.1143 9 6 2.6034 -4.9992 -1.2674 10 6 4.1050 -5.0154 -0.9742 11 6 4.6112 -3.5793 -0.8255 12 6 3.8738 -2.8954 0.3275 13 6 1.4392 -0.0861 2.4766 14 8 0.3275 -0.4049 2.8420 15 7 2.1372 0.8364 3.1682 16 6 3.4223 1.3184 2.6560 17 6 1.6447 1.3235 4.3513 18 1 0.5784 1.4211 4.4930 19 6 2.5172 1.6917 5.3681 20 7 2.0927 2.4456 6.3572 21 14 4.2935 1.1151 5.3289 22 1 5.1039 2.0628 4.5225 23 1 4.8272 1.0615 6.7137 24 1 4.3616 -0.2374 4.7194 25 1 -0.3633 0.5607 0.8613 26 1 -0.3633 0.4656 -0.9161 27 1 -0.3633 -1.0262 0.0549 28 1 1.8934 -0.5138 -0.8900 29 1 3.1296 1.4427 -0.0322 30 1 1.6507 1.9656 -0.8734 31 1 1.7033 1.9469 0.9058 32 1 0.5598 -2.2706 1.0272 33 1 1.8974 -2.6836 2.1265 34 1 2.1880 -2.3315 -0.8898 35 1 0.7962 -4.3038 -0.3227 36 1 2.0502 -4.8630 0.8100 37 1 2.2425 -6.0221 -1.3735 38 1 2.4196 -4.4516 -2.1918 39 1 4.2888 -5.5630 -0.0499 40 1 4.6304 -5.5022 -1.7959 41 1 4.4274 -3.0317 -1.7500 42 1 5.6810 -3.5909 -0.6171 43 1 4.2348 -1.8724 0.4337 44 1 4.0576 -3.4430 1.2519 45 1 3.6029 0.8922 1.6691 46 1 3.3997 2.4058 2.5835 47 1 4.2203 1.0159 3.3340 48 1 2.7020 2.7029 7.0668 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000518601082.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:26 Heat of formation + Delta-G solvation = -57.085436 kcal Electronic energy + Delta-G solvation = -24248.507254 eV Core-core repulsion = 21109.623640 eV Total energy + Delta-G solvation = -3138.883614 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.91968 -38.37409 -35.68591 -34.73629 -32.40126 -31.92236 -30.79531 -28.51680 -27.28480 -26.15363 -25.27192 -23.58185 -22.52362 -21.36367 -20.50751 -19.46766 -17.66816 -17.00388 -16.41983 -15.84953 -15.35609 -14.84960 -14.80422 -14.26423 -14.09229 -13.82872 -13.53909 -13.19167 -13.01676 -12.70488 -12.50068 -12.35946 -12.20329 -12.07645 -11.75477 -11.66513 -11.49053 -11.39149 -11.22401 -11.13990 -11.04216 -10.87301 -10.66362 -10.42610 -10.28174 -10.18629 -10.03814 -9.93847 -9.76676 -9.62272 -8.98397 -8.31559 -7.70656 -6.32150 -3.89656 3.06941 3.22191 3.26745 3.77730 4.18271 4.42011 4.66778 4.69984 4.76101 5.01185 5.06996 5.17476 5.24659 5.25378 5.30690 5.41716 5.49485 5.50374 5.51470 5.60829 5.68031 5.69336 5.83913 5.88258 5.92301 5.96271 5.98371 6.00804 6.02995 6.12183 6.13526 6.16104 6.24820 6.26514 6.27049 6.27674 6.39505 6.42271 6.45647 6.55155 6.66052 6.73488 6.88000 7.60500 8.32550 8.57972 9.02276 9.39901 9.84435 10.81068 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.019343 B = 0.005467 C = 0.004910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.200845 B = 5120.698896 C = 5701.372240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.081 4.081 3 C -0.159 4.159 4 C -0.107 4.107 5 H 0.081 0.919 6 C -0.096 4.096 7 C -0.086 4.086 8 C -0.114 4.114 9 C -0.118 4.118 10 C -0.119 4.119 11 C -0.118 4.118 12 C -0.119 4.119 13 C 0.477 3.523 14 O -0.563 6.563 15 N -0.473 5.473 16 C 0.054 3.946 17 C -0.313 4.313 18 H 0.108 0.892 19 C 0.054 3.946 20 N -0.874 5.874 21 Si 0.894 3.106 22 H -0.278 1.278 23 H -0.294 1.294 24 H -0.272 1.272 25 H 0.068 0.932 26 H 0.043 0.957 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.074 0.926 46 H 0.064 0.936 47 H 0.036 0.964 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.843 -10.009 -16.483 20.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.100 4.100 3 C -0.216 4.216 4 C -0.128 4.128 5 H 0.099 0.901 6 C -0.134 4.134 7 C -0.105 4.105 8 C -0.152 4.152 9 C -0.156 4.156 10 C -0.157 4.157 11 C -0.156 4.156 12 C -0.156 4.156 13 C 0.265 3.735 14 O -0.444 6.444 15 N -0.195 5.195 16 C -0.089 4.089 17 C -0.440 4.440 18 H 0.126 0.874 19 C -0.150 4.150 20 N -0.511 5.511 21 Si 0.724 3.276 22 H -0.205 1.205 23 H -0.222 1.222 24 H -0.198 1.198 25 H 0.087 0.913 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.093 0.907 46 H 0.083 0.917 47 H 0.054 0.946 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.311 -10.041 -16.084 19.691 hybrid contribution 1.230 -0.120 0.226 1.256 sum 6.541 -10.161 -15.858 19.938 Atomic orbital electron populations 1.21903 0.94687 1.02300 1.01547 1.21024 0.96736 0.95687 0.96516 1.22127 1.00441 0.96456 1.02587 1.21487 1.00696 0.96013 0.94617 0.90100 1.21467 1.00973 0.92978 0.97948 1.21221 0.94663 0.95546 0.99050 1.21576 0.99444 0.95714 0.98442 1.21525 0.95242 1.00126 0.98667 1.21536 0.95936 0.96973 1.01240 1.21530 0.99246 0.95848 0.98960 1.21672 0.95058 1.00687 0.98201 1.20098 0.87265 0.80344 0.85743 1.90530 1.19809 1.63555 1.70538 1.43710 1.18497 1.36074 1.21226 1.22299 0.87600 1.00420 0.98626 1.19138 0.95375 1.40284 0.89180 0.87408 1.25291 0.98596 0.95824 0.95288 1.69703 1.36716 1.32531 1.12181 0.86809 0.84902 0.79807 0.76039 1.20463 1.22180 1.19787 0.91303 0.93816 0.92439 0.91030 0.92751 0.92952 0.91371 0.90589 0.92002 0.90955 0.92018 0.92055 0.92428 0.92201 0.92153 0.92546 0.92186 0.92384 0.91747 0.92018 0.90747 0.91745 0.94624 0.91707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 8.33 37.16 0.31 -2.01 16 2 C -0.08 -1.18 2.58 -90.62 -0.23 -1.42 16 3 C -0.16 -2.29 7.73 37.16 0.29 -2.00 16 4 C -0.11 -1.80 1.48 -91.76 -0.14 -1.94 16 5 H 0.08 1.28 4.18 -51.93 -0.22 1.07 16 6 C -0.10 -1.48 3.61 -26.73 -0.10 -1.58 16 7 C -0.09 -1.03 2.08 -90.62 -0.19 -1.22 16 8 C -0.11 -1.23 5.20 -26.73 -0.14 -1.37 16 9 C -0.12 -1.08 5.92 -26.73 -0.16 -1.24 16 10 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16 11 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 12 C -0.12 -1.36 4.98 -26.73 -0.13 -1.49 16 13 C 0.48 10.88 5.03 -10.98 -0.06 10.82 16 14 O -0.56 -14.87 14.74 5.56 0.08 -14.79 16 15 N -0.47 -11.49 2.45 -122.19 -0.30 -11.79 16 16 C 0.05 1.08 7.24 59.85 0.43 1.51 16 17 C -0.31 -8.98 9.57 -14.93 -0.14 -9.13 16 18 H 0.11 3.50 7.76 -52.49 -0.41 3.09 16 19 C 0.05 1.53 5.41 -17.47 -0.09 1.44 16 20 N -0.87 -25.84 13.96 55.50 0.77 -25.07 16 21 Si 0.89 21.28 24.34 -169.99 -4.14 17.14 16 22 H -0.28 -6.12 6.85 56.52 0.39 -5.73 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.27 -6.39 6.99 56.52 0.40 -6.00 16 25 H 0.07 1.33 6.52 -51.93 -0.34 0.99 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.88 6.30 -51.93 -0.33 0.56 16 28 H 0.07 0.89 6.30 -51.93 -0.33 0.56 16 29 H 0.05 0.69 6.88 -51.93 -0.36 0.33 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.19 6.21 -51.92 -0.32 0.86 16 32 H 0.08 1.24 6.14 -51.93 -0.32 0.92 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.07 0.83 6.29 -51.93 -0.33 0.50 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.76 6.45 -51.93 -0.34 0.42 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.07 1.21 3.29 -51.93 -0.17 1.04 16 46 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 47 H 0.04 0.75 2.83 -51.93 -0.15 0.60 16 48 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 340.77 15.07 5.14 5.14 Total: -1.00 -31.16 340.77 -7.36 -38.51 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -8.25 Total: 2.97 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -0.66 Total: -12.12 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.48 Total: -36.86 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: 0.08 Total: -14.79 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.14 Total: 17.14 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.16 -7.36 -38.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000518601082.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.571 kcal (2) G-P(sol) polarization free energy of solvation -31.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds