Wall clock time and date at job start Tue Mar 31 2020 05:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47210 * 2 1 4 4 C 1.52999 * 109.47019 * 119.99603 * 2 1 3 5 5 H 1.09009 * 109.47292 * 55.09673 * 4 2 1 6 6 C 1.52996 * 109.47277 * 175.09691 * 4 2 1 7 7 C 1.53005 * 109.47047 * 294.37127 * 6 4 2 8 8 C 1.53002 * 109.47204 * 175.36423 * 7 6 4 9 9 C 1.52995 * 109.47213 * 179.97438 * 8 7 6 10 10 C 1.52995 * 109.47095 * 299.99942 * 9 8 7 11 11 C 1.52999 * 109.47147 * 60.00315 * 10 9 8 12 12 C 1.52995 * 109.47030 * 295.36320 * 7 6 4 13 13 C 1.50705 * 109.47112 * 295.09847 * 4 2 1 14 14 O 1.21290 * 119.99702 * 270.04532 * 13 4 2 15 15 N 1.34777 * 120.00159 * 90.05362 * 13 4 2 16 16 C 1.46496 * 119.99896 * 4.65616 * 15 13 4 17 17 C 1.37097 * 119.99942 * 184.65986 * 15 13 4 18 18 H 1.08000 * 119.99709 * 2.81936 * 17 15 13 19 19 C 1.38944 * 119.99815 * 182.81614 * 17 15 13 20 20 N 1.31413 * 120.00303 * 6.38871 * 19 17 15 21 21 Si 1.86808 * 119.99941 * 186.39026 * 19 17 15 22 22 H 1.48501 * 109.47070 * 60.00028 * 21 19 17 23 23 H 1.48493 * 109.47025 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.46819 * 300.00072 * 21 19 17 25 25 H 1.08992 * 109.47722 * 304.79211 * 1 2 3 26 26 H 1.09000 * 109.47145 * 64.79357 * 1 2 3 27 27 H 1.09008 * 109.47086 * 184.79201 * 1 2 3 28 28 H 1.08997 * 109.47047 * 239.99576 * 2 1 3 29 29 H 1.09004 * 109.46488 * 303.85497 * 3 2 1 30 30 H 1.08996 * 109.47300 * 63.84734 * 3 2 1 31 31 H 1.08988 * 109.47347 * 183.85461 * 3 2 1 32 32 H 1.08998 * 109.47229 * 174.37403 * 6 4 2 33 33 H 1.08998 * 109.47167 * 54.36741 * 6 4 2 34 34 H 1.08996 * 109.47268 * 55.36486 * 7 6 4 35 35 H 1.08996 * 109.46956 * 59.99872 * 8 7 6 36 36 H 1.09005 * 109.46722 * 300.00311 * 8 7 6 37 37 H 1.08995 * 109.47298 * 179.97438 * 9 8 7 38 38 H 1.09005 * 109.46925 * 60.00088 * 9 8 7 39 39 H 1.09002 * 109.47250 * 180.02562 * 10 9 8 40 40 H 1.08996 * 109.47231 * 300.00138 * 10 9 8 41 41 H 1.08991 * 109.47894 * 59.99734 * 11 10 9 42 42 H 1.09004 * 109.47025 * 180.02562 * 11 10 9 43 43 H 1.09005 * 109.47354 * 299.99935 * 12 7 6 44 44 H 1.09003 * 109.47551 * 59.99827 * 12 7 6 45 45 H 1.08998 * 109.47586 * 356.05830 * 16 15 13 46 46 H 1.09002 * 109.46902 * 116.06001 * 16 15 13 47 47 H 1.08998 * 109.47244 * 236.06037 * 16 15 13 48 48 H 0.97000 * 119.99803 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6066 -1.7204 1.2944 6 6 3.5649 -0.8289 1.1892 7 6 3.9667 -1.7345 0.0233 8 6 5.4910 -1.7502 -0.1085 9 6 5.8928 -2.6563 -1.2740 10 6 5.3889 -4.0771 -1.0126 11 6 3.8646 -4.0614 -0.8808 12 6 3.4628 -3.1554 0.2841 13 6 1.6392 0.0560 2.4767 14 8 2.3744 0.9137 2.9183 15 7 0.4639 -0.2021 3.0838 16 6 -0.3770 -1.3055 2.6130 17 6 0.0553 0.5678 4.1420 18 1 0.6530 1.4093 4.4601 19 6 -1.1277 0.2657 4.8051 20 7 -1.7902 -0.8279 4.5018 21 14 -1.7766 1.4142 6.1279 22 1 -2.0270 2.7548 5.5402 23 1 -3.0445 0.8703 6.6771 24 1 -0.7743 1.5307 7.2174 25 1 -0.3634 0.5863 0.8438 26 1 -0.3633 0.4377 -0.9298 27 1 -0.3634 -1.0242 0.0859 28 1 1.8933 -0.5139 -0.8899 29 1 1.6213 1.9758 -0.8535 30 1 1.7341 1.9360 0.9224 31 1 3.1277 1.4433 -0.0691 32 1 3.9364 -1.2519 2.1226 33 1 3.9937 0.1626 1.0436 34 1 3.5262 -1.3563 -0.8991 35 1 5.9315 -2.1284 0.8139 36 1 5.8500 -0.7379 -0.2942 37 1 6.9786 -2.6672 -1.3682 38 1 5.4522 -2.2785 -2.1966 39 1 5.6755 -4.7228 -1.8427 40 1 5.8294 -4.4549 -0.0900 41 1 3.4240 -3.6836 -1.8033 42 1 3.5057 -5.0736 -0.6942 43 1 3.9034 -3.5336 1.2066 44 1 2.3768 -3.1443 0.3781 45 1 0.0743 -1.7542 1.7281 46 1 -0.4632 -2.0570 3.3977 47 1 -1.3677 -0.9261 2.3628 48 1 -2.6159 -1.0389 4.9650 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000518601083.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:28 Heat of formation + Delta-G solvation = -62.639280 kcal Electronic energy + Delta-G solvation = -24147.964142 eV Core-core repulsion = 21008.839695 eV Total energy + Delta-G solvation = -3139.124447 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.69814 -38.20625 -35.50680 -34.55784 -32.26298 -31.40598 -30.71059 -28.32662 -27.12699 -25.85189 -24.73251 -23.42419 -22.43477 -21.21829 -20.50647 -19.41559 -17.54047 -16.74421 -16.29625 -15.26036 -15.16525 -14.68880 -14.34639 -14.12959 -14.00499 -13.80348 -13.28991 -13.03906 -12.93337 -12.43061 -12.25709 -12.11009 -11.95810 -11.72303 -11.47432 -11.42972 -11.14534 -11.08320 -11.02937 -10.94884 -10.82518 -10.77233 -10.54011 -10.38020 -10.28386 -10.14564 -9.99701 -9.88524 -9.77384 -9.43186 -8.96182 -8.12780 -7.74693 -6.15925 -3.72363 3.21557 3.26621 3.31038 4.01329 4.16710 4.68417 4.76876 4.81890 5.00716 5.16548 5.21047 5.29579 5.36941 5.45416 5.52300 5.57166 5.58478 5.61407 5.61886 5.70101 5.87132 5.99050 5.99805 6.04393 6.09537 6.13539 6.14885 6.18504 6.22198 6.29096 6.32870 6.37791 6.40259 6.47315 6.53473 6.56917 6.65826 6.76584 6.80626 6.93318 7.00395 7.16599 7.49070 7.62660 8.15945 8.58352 9.28621 9.56510 10.11609 10.77755 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.026137 B = 0.004477 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.017613 B = 6253.061411 C = 6423.811755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.078 4.078 3 C -0.147 4.147 4 C -0.099 4.099 5 H 0.083 0.917 6 C -0.093 4.093 7 C -0.087 4.087 8 C -0.114 4.114 9 C -0.118 4.118 10 C -0.119 4.119 11 C -0.119 4.119 12 C -0.118 4.118 13 C 0.451 3.549 14 O -0.596 6.596 15 N -0.449 5.449 16 C 0.112 3.888 17 C -0.297 4.297 18 H 0.101 0.899 19 C 0.025 3.975 20 N -0.891 5.891 21 Si 0.928 3.072 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.274 1.274 25 H 0.068 0.932 26 H 0.045 0.955 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.041 0.959 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.066 0.934 45 H 0.029 0.971 46 H 0.067 0.933 47 H 0.063 0.937 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.852 -5.960 -12.018 15.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.097 4.097 3 C -0.204 4.204 4 C -0.120 4.120 5 H 0.100 0.900 6 C -0.130 4.130 7 C -0.105 4.105 8 C -0.152 4.152 9 C -0.156 4.156 10 C -0.156 4.156 11 C -0.156 4.156 12 C -0.155 4.155 13 C 0.239 3.761 14 O -0.482 6.482 15 N -0.167 5.167 16 C -0.031 4.031 17 C -0.425 4.425 18 H 0.119 0.881 19 C -0.176 4.176 20 N -0.533 5.533 21 Si 0.755 3.245 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.200 1.200 25 H 0.087 0.913 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.047 0.953 46 H 0.086 0.914 47 H 0.082 0.918 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.987 -5.637 -11.699 15.246 hybrid contribution -0.610 0.335 0.722 1.003 sum 7.377 -5.302 -10.977 14.249 Atomic orbital electron populations 1.22106 0.95279 1.02066 1.01828 1.20988 0.95682 0.96541 0.96492 1.21893 1.00546 0.95937 1.02046 1.21343 0.96447 0.99719 0.94499 0.89952 1.21419 0.94357 0.99852 0.97420 1.21229 0.94929 0.95175 0.99196 1.21577 0.96003 0.99314 0.98266 1.21525 0.99941 0.95397 0.98704 1.21530 0.96169 0.96735 1.01207 1.21525 0.95586 0.99487 0.99014 1.21650 1.01077 0.94761 0.98002 1.19808 0.82587 0.87121 0.86571 1.90482 1.52695 1.37171 1.67871 1.43717 1.16560 1.28148 1.28298 1.21949 0.94222 0.90211 0.96712 1.19741 1.05351 1.09764 1.07688 0.88091 1.25254 0.96685 0.96873 0.98789 1.70151 1.17295 1.23436 1.42377 0.85971 0.77987 0.79978 0.80584 1.20047 1.21011 1.19988 0.91288 0.93628 0.92492 0.91419 0.93947 0.91191 0.92915 0.92263 0.90996 0.91093 0.92126 0.92140 0.92525 0.92236 0.92618 0.92192 0.92221 0.92384 0.92104 0.91568 0.95273 0.91412 0.91847 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 7.65 37.16 0.28 -2.31 16 2 C -0.08 -1.27 2.57 -90.62 -0.23 -1.50 16 3 C -0.15 -2.51 8.48 37.16 0.32 -2.19 16 4 C -0.10 -1.80 1.48 -91.77 -0.14 -1.93 16 5 H 0.08 1.45 4.05 -51.92 -0.21 1.24 16 6 C -0.09 -1.52 3.53 -26.73 -0.09 -1.62 16 7 C -0.09 -1.11 2.06 -90.62 -0.19 -1.30 16 8 C -0.11 -1.31 5.20 -26.73 -0.14 -1.45 16 9 C -0.12 -1.16 5.92 -26.74 -0.16 -1.31 16 10 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 11 C -0.12 -1.22 5.92 -26.76 -0.16 -1.37 16 12 C -0.12 -1.43 4.96 -26.76 -0.13 -1.56 16 13 C 0.45 10.79 5.02 -10.98 -0.06 10.73 16 14 O -0.60 -16.23 14.77 5.55 0.08 -16.15 16 15 N -0.45 -11.46 2.53 -122.20 -0.31 -11.77 16 16 C 0.11 2.55 6.78 59.84 0.41 2.96 16 17 C -0.30 -8.34 9.56 -14.94 -0.14 -8.48 16 18 H 0.10 2.98 7.19 -52.49 -0.38 2.60 16 19 C 0.03 0.67 5.42 -17.47 -0.09 0.57 16 20 N -0.89 -23.59 9.51 55.50 0.53 -23.07 16 21 Si 0.93 21.13 29.56 -169.99 -5.02 16.11 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 25 H 0.07 1.39 6.55 -51.93 -0.34 1.05 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.89 6.48 -51.92 -0.34 0.56 16 28 H 0.07 0.95 6.29 -51.93 -0.33 0.62 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 1.45 6.31 -51.93 -0.33 1.13 16 31 H 0.05 0.85 6.63 -51.94 -0.34 0.51 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.07 1.26 6.29 -51.93 -0.33 0.93 16 34 H 0.07 0.89 6.29 -51.93 -0.33 0.57 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.07 0.85 6.44 -51.93 -0.33 0.51 16 45 H 0.03 0.56 3.58 -51.93 -0.19 0.37 16 46 H 0.07 1.66 6.94 -51.93 -0.36 1.30 16 47 H 0.06 1.51 7.17 -51.93 -0.37 1.14 16 48 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 344.37 15.07 5.19 5.19 Total: -1.00 -29.18 344.37 -8.60 -37.78 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -8.38 Total: 3.98 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -0.68 Total: -12.06 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: 0.22 Total: -34.84 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: 0.08 Total: -16.15 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.18 -8.60 -37.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000518601083.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.863 kcal (2) G-P(sol) polarization free energy of solvation -29.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds