Wall clock time and date at job start Tue Mar 31 2020 05:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46903 * 2 1 4 4 H 1.08999 * 109.46804 * 304.99990 * 3 2 1 5 5 C 1.52995 * 109.47121 * 65.00002 * 3 2 1 6 6 C 1.52999 * 109.47307 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.46761 * 300.00020 * 6 5 3 8 8 C 1.52995 * 109.47226 * 59.99931 * 7 6 5 9 9 C 1.52999 * 109.47307 * 299.99735 * 8 7 6 10 10 H 1.09002 * 109.47303 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.47234 * 300.00246 * 9 8 7 12 12 O 1.21279 * 120.00102 * 95.15517 * 11 9 8 13 13 N 1.34779 * 119.99662 * 275.16084 * 11 9 8 14 14 C 1.46501 * 120.00158 * 4.09575 * 13 11 9 15 15 C 1.50699 * 109.47190 * 88.06242 * 14 13 11 16 16 H 1.07993 * 119.99994 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99677 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00092 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99870 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.46897 * 60.00291 * 19 17 15 21 21 H 1.48497 * 109.47401 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47164 * 300.00302 * 19 17 15 23 23 C 1.46495 * 119.99754 * 184.09295 * 13 11 9 24 24 C 1.52994 * 109.47329 * 296.47207 * 23 13 11 25 25 C 1.53006 * 109.46909 * 56.47369 * 23 13 11 26 26 H 1.08999 * 109.46970 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47190 * 299.99758 * 1 2 3 28 28 H 1.08996 * 109.47209 * 60.00277 * 1 2 3 29 29 H 1.08993 * 109.47201 * 240.00412 * 2 1 3 30 30 H 1.08996 * 109.47209 * 119.99723 * 2 1 3 31 31 H 1.09001 * 109.47361 * 59.99748 * 5 3 2 32 32 H 1.08997 * 109.47305 * 299.99923 * 5 3 2 33 33 H 1.09000 * 109.47787 * 180.02562 * 6 5 3 34 34 H 1.09001 * 109.47225 * 59.99531 * 6 5 3 35 35 H 1.09005 * 109.46750 * 179.97438 * 7 6 5 36 36 H 1.08999 * 109.47326 * 299.99535 * 7 6 5 37 37 H 1.09001 * 109.47361 * 60.00121 * 8 7 6 38 38 H 1.09005 * 109.47272 * 179.97438 * 8 7 6 39 39 H 1.08998 * 109.47023 * 208.06543 * 14 13 11 40 40 H 1.09007 * 109.46975 * 328.06471 * 14 13 11 41 41 H 0.97001 * 119.99316 * 179.97438 * 18 17 15 42 42 H 1.09004 * 109.47205 * 176.47156 * 23 13 11 43 43 H 1.09004 * 109.47264 * 57.21163 * 24 23 13 44 44 H 1.09000 * 109.47279 * 177.20632 * 24 23 13 45 45 H 1.08993 * 109.47654 * 297.21075 * 24 23 13 46 46 H 1.08997 * 109.47199 * 59.22299 * 25 23 13 47 47 H 1.09000 * 109.47059 * 179.21742 * 25 23 13 48 48 H 1.08999 * 109.47383 * 299.21786 * 25 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 2.1446 3.5693 1.3071 7 6 3.6694 3.5717 1.1811 8 6 4.0742 2.8877 -0.1262 9 6 3.5648 1.4450 -0.1260 10 1 3.8536 0.9575 -1.0572 11 6 4.1662 0.7001 1.0378 12 8 3.5536 0.6078 2.0805 13 7 5.3848 0.1365 0.9200 14 6 6.1629 0.3238 -0.3071 15 6 6.9868 1.5804 -0.1926 16 1 6.9363 2.1794 0.7045 17 6 7.8060 1.9648 -1.2330 18 7 7.8679 1.2350 -2.3254 19 14 8.8278 3.5220 -1.0909 20 1 9.7499 3.4050 0.0673 21 1 9.6164 3.7119 -2.3348 22 1 7.9291 4.6874 -0.8924 23 6 5.9314 -0.6632 2.0190 24 6 6.1276 0.2261 3.2484 25 6 4.9595 -1.7952 2.3583 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.0698 1.5876 2.1492 32 1 0.5489 2.1253 1.3969 33 1 1.8566 4.0565 2.2386 34 1 1.7096 4.1081 0.4653 35 1 4.0322 4.5996 1.1804 36 1 4.1044 3.0330 2.0229 37 1 3.6392 3.4264 -0.9681 38 1 5.1605 2.8898 -0.2163 39 1 6.8228 -0.5314 -0.4529 40 1 5.4859 0.4094 -1.1571 41 1 8.4439 1.5057 -3.0574 42 1 6.8905 -1.0854 1.7191 43 1 5.1777 0.6875 3.5185 44 1 6.4874 -0.3787 4.0807 45 1 6.8575 1.0033 3.0219 46 1 4.8090 -2.4208 1.4785 47 1 5.3726 -2.3985 3.1667 48 1 4.0048 -1.3728 2.6715 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527240221.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:51 Heat of formation + Delta-G solvation = -67.057754 kcal Electronic energy + Delta-G solvation = -25002.321059 eV Core-core repulsion = 21863.005012 eV Total energy + Delta-G solvation = -3139.316047 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.27987 -37.39919 -35.06476 -33.58882 -33.14863 -31.78081 -29.89416 -28.54924 -26.99492 -26.56683 -23.66107 -23.19351 -22.70730 -21.15100 -20.22713 -19.75610 -17.46573 -16.51761 -15.87686 -15.54574 -14.90527 -14.56550 -14.39758 -14.04057 -13.51419 -13.33407 -13.27972 -12.93336 -12.71886 -12.51849 -12.30085 -12.16038 -11.91766 -11.65469 -11.58274 -11.37081 -11.14494 -11.04316 -10.95368 -10.89948 -10.85992 -10.68869 -10.45919 -10.38397 -10.23890 -10.16439 -9.94809 -9.70276 -9.42735 -9.32011 -8.55076 -8.14489 -7.62040 -6.18284 -4.23519 3.23283 3.28688 3.30959 3.55250 4.00917 4.33326 5.08233 5.12951 5.18299 5.27461 5.44076 5.51381 5.59501 5.65403 5.71212 5.74671 5.83783 5.87764 5.98837 6.03579 6.10245 6.12479 6.12974 6.17671 6.22726 6.25162 6.34257 6.38330 6.39703 6.44720 6.48891 6.64100 6.67788 6.74405 6.79650 6.80697 6.85918 6.87764 6.93051 7.16186 7.21767 7.28407 7.66869 7.79996 8.07829 8.47665 8.82369 9.19761 9.42507 10.88008 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015342 B = 0.007205 C = 0.006154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.614675 B = 3885.425570 C = 4549.134418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.124 4.124 3 C -0.064 4.064 4 H 0.062 0.938 5 C -0.139 4.139 6 C -0.112 4.112 7 C -0.117 4.117 8 C -0.121 4.121 9 C -0.096 4.096 10 H 0.088 0.912 11 C 0.534 3.466 12 O -0.562 6.562 13 N -0.593 5.593 14 C 0.236 3.764 15 C -0.530 4.530 16 H 0.062 0.938 17 C 0.066 3.934 18 N -0.890 5.890 19 Si 0.891 3.109 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.148 3.852 24 C -0.162 4.162 25 C -0.167 4.167 26 H 0.046 0.954 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.116 0.884 32 H 0.043 0.957 33 H 0.049 0.951 34 H 0.047 0.953 35 H 0.050 0.950 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.108 0.892 39 H 0.032 0.968 40 H 0.039 0.961 41 H 0.265 0.735 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.048 0.952 45 H 0.055 0.945 46 H 0.047 0.953 47 H 0.052 0.948 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.930 -0.920 4.645 10.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C -0.083 4.083 4 H 0.080 0.920 5 C -0.175 4.175 6 C -0.149 4.149 7 C -0.155 4.155 8 C -0.158 4.158 9 C -0.117 4.117 10 H 0.106 0.894 11 C 0.323 3.677 12 O -0.444 6.444 13 N -0.323 5.323 14 C 0.116 3.884 15 C -0.568 4.568 16 H 0.080 0.920 17 C -0.137 4.137 18 N -0.528 5.528 19 Si 0.718 3.282 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.200 1.200 23 C 0.044 3.956 24 C -0.220 4.220 25 C -0.225 4.225 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.134 0.866 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.126 0.874 39 H 0.050 0.950 40 H 0.057 0.943 41 H 0.075 0.925 42 H 0.097 0.903 43 H 0.091 0.909 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.066 0.934 47 H 0.071 0.929 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.112 -1.003 4.970 10.428 hybrid contribution 0.847 0.907 -0.331 1.284 sum -8.266 -0.097 4.638 9.479 Atomic orbital electron populations 1.21768 0.96517 1.00754 1.01406 1.21628 0.95276 0.97058 1.02171 1.20960 0.93561 0.95564 0.98210 0.91967 1.22162 0.99033 0.95793 1.00548 1.21467 0.96213 0.97249 1.00017 1.21515 0.95461 0.99710 0.98812 1.21713 1.04974 0.92431 0.96716 1.21254 0.94855 0.97523 0.98025 0.89355 1.20303 0.80703 0.77823 0.88833 1.90301 1.61754 1.61776 1.30575 1.48362 1.16829 1.49091 1.18006 1.19470 0.90891 0.97160 0.80886 1.21407 1.24887 1.08467 1.02046 0.91956 1.24923 0.96585 0.97063 0.95139 1.69911 1.38856 1.38378 1.05674 0.86663 0.80460 0.83572 0.77478 1.20174 1.21186 1.19955 1.20789 0.96412 0.90910 0.87440 1.22138 1.02970 1.00095 0.96830 1.22207 1.01837 0.97792 1.00614 0.93500 0.92629 0.93344 0.92817 0.90979 0.86618 0.93805 0.93254 0.93380 0.93078 0.91752 0.92534 0.87356 0.94995 0.94322 0.92502 0.90344 0.90867 0.93339 0.92618 0.93406 0.92945 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.67 37.16 0.36 -1.49 16 2 C -0.12 -1.85 5.03 -26.73 -0.13 -1.99 16 3 C -0.06 -1.01 1.93 -90.62 -0.17 -1.19 16 4 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 5 C -0.14 -2.17 4.65 -26.73 -0.12 -2.29 16 6 C -0.11 -1.71 5.92 -26.73 -0.16 -1.86 16 7 C -0.12 -2.02 5.67 -26.73 -0.15 -2.17 16 8 C -0.12 -2.24 5.39 -26.73 -0.14 -2.38 16 9 C -0.10 -1.74 1.83 -91.77 -0.17 -1.91 16 10 H 0.09 1.70 6.19 -51.93 -0.32 1.38 16 11 C 0.53 10.31 4.43 -10.98 -0.05 10.26 16 12 O -0.56 -10.96 7.69 5.56 0.04 -10.92 16 13 N -0.59 -11.96 2.41 -167.47 -0.40 -12.37 16 14 C 0.24 5.43 4.93 -5.19 -0.03 5.40 16 15 C -0.53 -13.14 6.85 -34.44 -0.24 -13.38 16 16 H 0.06 1.58 7.61 -52.49 -0.40 1.18 16 17 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -23.98 13.29 55.43 0.74 -23.24 16 19 Si 0.89 20.19 29.54 -169.99 -5.02 15.17 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 C 0.15 2.70 3.28 -67.93 -0.22 2.48 16 24 C -0.16 -2.84 9.21 37.15 0.34 -2.49 16 25 C -0.17 -2.69 9.05 37.16 0.34 -2.35 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.69 6.57 -51.93 -0.34 0.35 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 1.20 6.60 -51.93 -0.34 0.86 16 31 H 0.12 2.07 4.87 -52.15 -0.25 1.82 16 32 H 0.04 0.62 6.56 -51.93 -0.34 0.28 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 1.23 6.83 -51.93 -0.35 0.87 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.11 2.33 4.99 -51.93 -0.26 2.07 16 39 H 0.03 0.78 7.85 -51.93 -0.41 0.38 16 40 H 0.04 0.93 5.89 -51.92 -0.31 0.62 16 41 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 42 H 0.08 1.44 7.75 -51.93 -0.40 1.04 16 43 H 0.07 1.37 6.23 -51.93 -0.32 1.04 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.08 1.37 6.08 -51.93 -0.32 1.05 16 LS Contribution 347.58 15.07 5.24 5.24 Total: -1.00 -25.27 347.58 -8.63 -33.90 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -8.58 Total: 5.99 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -0.65 Total: -13.77 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: 0.33 Total: -35.61 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.04 Total: -10.92 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -25.27 -8.63 -33.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527240221.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.160 kcal (2) G-P(sol) polarization free energy of solvation -25.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds