Wall clock time and date at job start Tue Mar 31 2020 05:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47139 * 2 1 4 4 H 1.09004 * 109.47485 * 54.99701 * 3 2 1 5 5 C 1.52998 * 109.47201 * 294.99900 * 3 2 1 6 6 C 1.52999 * 109.47552 * 179.97438 * 5 3 2 7 7 C 1.53007 * 109.47020 * 59.99643 * 6 5 3 8 8 C 1.52999 * 109.46948 * 300.00314 * 7 6 5 9 9 C 1.52999 * 109.47516 * 59.99991 * 8 7 6 10 10 H 1.09004 * 109.47357 * 59.99672 * 9 8 7 11 11 C 1.50693 * 109.47274 * 179.97438 * 9 8 7 12 12 O 1.21287 * 119.99653 * 85.08412 * 11 9 8 13 13 N 1.34774 * 120.00091 * 265.07962 * 11 9 8 14 14 C 1.46497 * 120.00385 * 3.81860 * 13 11 9 15 15 C 1.50699 * 109.46752 * 83.86535 * 14 13 11 16 16 H 1.08005 * 120.00612 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99941 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00132 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00156 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47256 * 89.99865 * 19 17 15 21 21 H 1.48503 * 109.47283 * 209.99633 * 19 17 15 22 22 H 1.48501 * 109.47250 * 329.99760 * 19 17 15 23 23 C 1.46505 * 119.99854 * 183.82077 * 13 11 9 24 24 C 1.53001 * 109.46850 * 298.99975 * 23 13 11 25 25 C 1.52992 * 109.47349 * 58.99780 * 23 13 11 26 26 H 1.09002 * 109.47393 * 300.00151 * 1 2 3 27 27 H 1.08999 * 109.46901 * 60.00778 * 1 2 3 28 28 H 1.09000 * 109.47346 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47664 * 239.99399 * 2 1 3 30 30 H 1.09009 * 109.46642 * 119.99698 * 2 1 3 31 31 H 1.09004 * 109.46738 * 300.00258 * 5 3 2 32 32 H 1.09000 * 109.47264 * 59.99710 * 5 3 2 33 33 H 1.08991 * 109.47046 * 299.99955 * 6 5 3 34 34 H 1.08998 * 109.47466 * 179.97438 * 6 5 3 35 35 H 1.08990 * 109.47317 * 180.02562 * 7 6 5 36 36 H 1.09004 * 109.46816 * 59.99962 * 7 6 5 37 37 H 1.09000 * 109.46962 * 180.02562 * 8 7 6 38 38 H 1.09000 * 109.47160 * 299.99996 * 8 7 6 39 39 H 1.08993 * 109.47321 * 203.86380 * 14 13 11 40 40 H 1.09004 * 109.46867 * 323.87397 * 14 13 11 41 41 H 0.96999 * 120.00013 * 180.02562 * 18 17 15 42 42 H 1.09001 * 109.46693 * 179.00141 * 23 13 11 43 43 H 1.08999 * 109.47552 * 67.02326 * 24 23 13 44 44 H 1.09003 * 109.46945 * 187.02508 * 24 23 13 45 45 H 1.09001 * 109.47216 * 307.01651 * 24 23 13 46 46 H 1.09002 * 109.46848 * 62.53202 * 25 23 13 47 47 H 1.09002 * 109.47493 * 182.52843 * 25 23 13 48 48 H 1.09001 * 109.47565 * 302.53479 * 25 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1265 -1.3073 6 6 2.1447 3.5692 -1.3071 7 6 3.6695 3.5716 -1.1810 8 6 4.0742 2.8876 0.1264 9 6 3.5647 1.4449 0.1262 10 1 3.9998 0.9060 -0.7156 11 6 3.9639 0.7711 1.4136 12 8 3.2704 0.8914 2.4014 13 7 5.0913 0.0346 1.4674 14 6 5.9722 -0.0427 0.2994 15 6 6.8944 1.1491 0.2861 16 1 6.8310 1.8899 1.0695 17 6 7.8192 1.2939 -0.7263 18 7 7.8968 0.3916 -1.6800 19 14 8.9628 2.7708 -0.7426 20 1 10.2029 2.4450 0.0065 21 1 9.3078 3.1143 -2.1455 22 1 8.2868 3.9274 -0.1017 23 6 5.4360 -0.6886 2.6940 24 6 5.6131 0.3082 3.8411 25 6 4.3142 -1.6699 3.0398 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 2.0699 1.5874 -2.1491 32 1 0.5489 2.1252 -1.3970 33 1 1.7097 4.1079 -0.4655 34 1 1.8567 4.0564 -2.2387 35 1 4.0324 4.5993 -1.1804 36 1 4.1045 3.0327 -2.0228 37 1 5.1604 2.8897 0.2164 38 1 3.6391 3.4264 0.9681 39 1 6.5621 -0.9579 0.3492 40 1 5.3708 -0.0469 -0.6096 41 1 8.5477 0.4933 -2.3921 42 1 6.3654 -1.2377 2.5430 43 1 4.6528 0.7677 4.0748 44 1 5.9900 -0.2135 4.7208 45 1 6.3230 1.0805 3.5449 46 1 4.2181 -2.4073 2.2428 47 1 4.5497 -2.1756 3.9762 48 1 3.3757 -1.1260 3.1466 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527240222.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:53 Heat of formation + Delta-G solvation = -78.407988 kcal Electronic energy + Delta-G solvation = -24668.083044 eV Core-core repulsion = 21528.274814 eV Total energy + Delta-G solvation = -3139.808230 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.96390 -37.69354 -35.20197 -33.58946 -33.20937 -31.72119 -29.99840 -28.65520 -26.92381 -26.57932 -23.77800 -23.29231 -22.74397 -21.18836 -20.24534 -19.31421 -17.86933 -16.55080 -16.03269 -15.45237 -14.69797 -14.50470 -14.44548 -14.20885 -13.65382 -13.64242 -13.13147 -12.93164 -12.85398 -12.55630 -12.29530 -12.24323 -12.00191 -11.68576 -11.55272 -11.36669 -11.17283 -11.14414 -10.94170 -10.89211 -10.85709 -10.68034 -10.61775 -10.37162 -10.35876 -10.14275 -9.85146 -9.78410 -9.67452 -9.42343 -8.60243 -8.42648 -7.61138 -6.16725 -4.22517 3.22294 3.30032 3.32572 3.55730 4.01206 4.34493 5.00837 5.05380 5.13808 5.18396 5.40068 5.42932 5.50236 5.60171 5.70774 5.74516 5.76604 5.83453 5.90002 5.97567 5.99087 6.01386 6.06949 6.10892 6.11539 6.24942 6.29738 6.35184 6.36847 6.39725 6.48248 6.50470 6.52519 6.62085 6.67925 6.72800 6.78886 6.83900 6.90192 6.97799 7.03622 7.27031 7.66516 7.80717 8.09465 8.45853 8.84054 9.18518 9.44433 10.89816 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.012970 B = 0.007996 C = 0.005784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.273881 B = 3500.980395 C = 4839.898664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C -0.069 4.069 4 H 0.075 0.925 5 C -0.113 4.113 6 C -0.118 4.118 7 C -0.115 4.115 8 C -0.108 4.108 9 C -0.094 4.094 10 H 0.096 0.904 11 C 0.529 3.471 12 O -0.572 6.572 13 N -0.594 5.594 14 C 0.237 3.763 15 C -0.529 4.529 16 H 0.061 0.939 17 C 0.066 3.934 18 N -0.891 5.891 19 Si 0.890 3.110 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.272 1.272 23 C 0.147 3.853 24 C -0.162 4.162 25 C -0.166 4.166 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.047 0.953 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.053 0.947 39 H 0.033 0.967 40 H 0.038 0.962 41 H 0.264 0.736 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.048 0.952 45 H 0.056 0.944 46 H 0.048 0.952 47 H 0.053 0.947 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.556 0.732 1.616 9.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.159 4.159 3 C -0.087 4.087 4 H 0.093 0.907 5 C -0.150 4.150 6 C -0.156 4.156 7 C -0.153 4.153 8 C -0.146 4.146 9 C -0.115 4.115 10 H 0.114 0.886 11 C 0.318 3.682 12 O -0.454 6.454 13 N -0.324 5.324 14 C 0.117 3.883 15 C -0.568 4.568 16 H 0.080 0.920 17 C -0.136 4.136 18 N -0.529 5.529 19 Si 0.718 3.282 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.197 1.197 23 C 0.043 3.957 24 C -0.220 4.220 25 C -0.224 4.224 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.111 0.889 38 H 0.071 0.929 39 H 0.051 0.949 40 H 0.055 0.945 41 H 0.074 0.926 42 H 0.097 0.903 43 H 0.091 0.909 44 H 0.067 0.933 45 H 0.075 0.925 46 H 0.067 0.933 47 H 0.072 0.928 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.779 0.718 1.944 9.996 hybrid contribution 1.016 0.698 -0.211 1.251 sum -8.763 1.417 1.733 9.044 Atomic orbital electron populations 1.21766 0.96346 1.00884 1.01443 1.21585 0.95449 0.96874 1.01983 1.21012 0.94105 0.95786 0.97842 0.90670 1.21617 0.99944 0.95777 0.97668 1.21551 0.96506 0.96654 1.00877 1.21491 0.94991 1.00169 0.98607 1.21490 1.03385 0.92866 0.96840 1.21275 0.95469 0.97769 0.97026 0.88642 1.20371 0.80161 0.77946 0.89739 1.90504 1.54309 1.63192 1.37365 1.48361 1.22615 1.46753 1.14713 1.19455 0.88650 0.97716 0.82435 1.21465 1.17829 1.07869 1.09602 0.92047 1.24905 0.97078 0.96383 0.95270 1.69918 1.35814 1.34517 1.12688 0.86613 0.81221 0.83059 0.77341 1.20616 1.21090 1.19675 1.20814 0.97326 0.92390 0.85159 1.22152 1.02995 0.99721 0.97136 1.22189 1.00962 0.98883 1.00339 0.92952 0.92869 0.93405 0.92429 0.91683 0.92026 0.92200 0.92420 0.92667 0.92461 0.91575 0.88933 0.92859 0.94884 0.94464 0.92608 0.90253 0.90929 0.93335 0.92508 0.93332 0.92799 0.90699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.67 37.16 0.36 -1.49 16 2 C -0.12 -1.84 5.23 -26.73 -0.14 -1.98 16 3 C -0.07 -1.09 1.40 -90.62 -0.13 -1.21 16 4 H 0.07 1.28 7.86 -51.93 -0.41 0.87 16 5 C -0.11 -1.54 4.96 -26.73 -0.13 -1.67 16 6 C -0.12 -1.59 5.92 -26.73 -0.16 -1.75 16 7 C -0.12 -1.80 5.92 -26.73 -0.16 -1.96 16 8 C -0.11 -1.98 5.19 -26.73 -0.14 -2.12 16 9 C -0.09 -1.74 1.51 -91.78 -0.14 -1.88 16 10 H 0.10 1.91 5.80 -51.93 -0.30 1.61 16 11 C 0.53 10.76 4.90 -10.99 -0.05 10.71 16 12 O -0.57 -12.27 12.06 5.55 0.07 -12.20 16 13 N -0.59 -12.36 2.42 -167.48 -0.41 -12.76 16 14 C 0.24 5.54 4.95 -5.20 -0.03 5.51 16 15 C -0.53 -13.31 7.67 -34.44 -0.26 -13.57 16 16 H 0.06 1.59 7.34 -52.48 -0.39 1.20 16 17 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -24.10 13.29 55.43 0.74 -23.36 16 19 Si 0.89 20.30 29.54 -169.99 -5.02 15.28 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 23 C 0.15 2.75 3.28 -67.93 -0.22 2.53 16 24 C -0.16 -2.92 9.02 37.16 0.33 -2.58 16 25 C -0.17 -2.75 9.14 37.15 0.34 -2.41 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.60 6.56 -51.93 -0.34 0.26 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.06 1.12 6.69 -51.92 -0.35 0.77 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.72 6.57 -51.93 -0.34 0.38 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.09 1.95 5.85 -51.93 -0.30 1.64 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.03 0.82 7.79 -51.93 -0.40 0.41 16 40 H 0.04 0.91 5.94 -51.93 -0.31 0.60 16 41 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 42 H 0.08 1.47 7.71 -51.93 -0.40 1.07 16 43 H 0.07 1.40 6.34 -51.93 -0.33 1.07 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 46 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 48 H 0.07 1.36 6.16 -51.93 -0.32 1.04 16 LS Contribution 357.60 15.07 5.39 5.39 Total: -1.00 -26.50 357.60 -8.68 -35.18 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -8.82 Total: 4.73 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -0.62 Total: -12.26 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.33 Total: -36.12 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.07 Total: -12.20 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -26.50 -8.68 -35.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527240222.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.227 kcal (2) G-P(sol) polarization free energy of solvation -26.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds