Wall clock time and date at job start Tue Mar 31 2020 06:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47126 * 2 1 4 4 N 1.46502 * 109.47376 * 120.00075 * 2 1 3 5 5 C 1.46501 * 119.99957 * 121.19741 * 4 2 1 6 6 C 1.50695 * 109.47200 * 264.09329 * 5 4 2 7 7 H 1.08005 * 119.99839 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00143 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99992 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00166 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47275 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47201 * 120.00174 * 10 8 6 13 13 H 1.48503 * 109.46745 * 240.00184 * 10 8 6 14 14 C 1.34777 * 119.99833 * 301.20077 * 4 2 1 15 15 O 1.21277 * 119.99954 * 3.82773 * 14 4 2 16 16 C 1.50697 * 119.99654 * 183.82734 * 14 4 2 17 17 C 1.53005 * 109.46836 * 145.86311 * 16 14 4 18 18 C 1.52998 * 109.47224 * 180.02562 * 17 16 14 19 19 C 1.53002 * 109.46945 * 300.00388 * 18 17 16 20 20 C 1.52994 * 109.47259 * 180.02562 * 19 18 17 21 21 C 1.53003 * 109.47189 * 299.99974 * 19 18 17 22 22 C 1.52998 * 109.47702 * 59.99867 * 19 18 17 23 23 C 1.52995 * 109.47106 * 265.86376 * 16 14 4 24 24 H 1.08998 * 109.47273 * 305.04875 * 1 2 3 25 25 H 1.08999 * 109.47404 * 65.04736 * 1 2 3 26 26 H 1.08996 * 109.47052 * 185.04763 * 1 2 3 27 27 H 1.09004 * 109.47286 * 240.00365 * 2 1 3 28 28 H 1.08995 * 109.47132 * 178.52449 * 3 2 1 29 29 H 1.08996 * 109.47206 * 298.52386 * 3 2 1 30 30 H 1.08995 * 109.46842 * 58.52257 * 3 2 1 31 31 H 1.09008 * 109.46978 * 24.09651 * 5 4 2 32 32 H 1.08995 * 109.46810 * 144.09198 * 5 4 2 33 33 H 0.96995 * 119.99664 * 179.97438 * 9 8 6 34 34 H 1.09003 * 109.47318 * 25.86949 * 16 14 4 35 35 H 1.08995 * 109.46931 * 60.00142 * 17 16 14 36 36 H 1.08994 * 109.47448 * 300.00159 * 17 16 14 37 37 H 1.09000 * 109.47353 * 59.99719 * 18 17 16 38 38 H 1.08995 * 109.47494 * 180.02562 * 18 17 16 39 39 H 1.08997 * 109.47637 * 59.99447 * 20 19 18 40 40 H 1.09004 * 109.47788 * 179.97438 * 20 19 18 41 41 H 1.09008 * 109.47151 * 299.99659 * 20 19 18 42 42 H 1.08999 * 109.47076 * 59.99742 * 21 19 18 43 43 H 1.08998 * 109.47339 * 180.02562 * 21 19 18 44 44 H 1.09004 * 109.46659 * 300.00242 * 21 19 18 45 45 H 1.09007 * 109.46976 * 59.99465 * 22 19 18 46 46 H 1.08994 * 109.47673 * 180.02562 * 22 19 18 47 47 H 1.08994 * 109.47362 * 60.00719 * 23 16 14 48 48 H 1.08998 * 109.47402 * 299.99730 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.8822 -1.8662 1.0618 6 6 2.0452 -3.1166 1.1443 7 1 0.9765 -3.0430 1.2826 8 6 2.6435 -4.3547 1.0434 9 7 3.9449 -4.4444 0.8756 10 14 1.6059 -5.9047 1.1450 11 1 0.1803 -5.5345 1.3348 12 1 1.7529 -6.6820 -0.1118 13 1 2.0597 -6.7297 2.2933 14 6 1.6729 -0.2444 2.4201 15 8 0.9025 0.6856 2.5314 16 6 2.2441 -0.9012 3.6503 17 6 2.4453 0.1506 4.7431 18 6 3.0258 -0.5160 5.9919 19 6 2.0595 -1.5920 6.4914 20 6 2.6396 -2.2582 7.7406 21 6 0.7140 -0.9496 6.8349 22 6 1.8582 -2.6439 5.3987 23 6 1.2773 -1.9769 4.1496 24 1 -0.3634 0.5901 0.8413 25 1 -0.3634 0.4335 -0.9317 26 1 -0.3633 -1.0236 0.0904 27 1 1.8934 -0.5138 -0.8900 28 1 3.1296 1.4427 0.0265 29 1 1.6985 1.9487 -0.9029 30 1 1.6552 1.9639 0.8764 31 1 3.3930 -1.8337 0.0994 32 1 3.6195 -1.8689 1.8646 33 1 4.3658 -5.3153 0.8049 34 1 3.2026 -1.3592 3.4060 35 1 1.4869 0.6086 4.9875 36 1 3.1340 0.9169 4.3875 37 1 3.9842 -0.9738 5.7473 38 1 3.1687 0.2332 6.7706 39 1 2.7826 -1.5088 8.5190 40 1 1.9510 -3.0246 8.0968 41 1 3.5983 -2.7159 7.4964 42 1 0.3006 -0.4747 5.9452 43 1 0.0258 -1.7161 7.1911 44 1 0.8574 -0.2003 7.6134 45 1 2.8168 -3.1015 5.1540 46 1 1.1696 -3.4102 5.7544 47 1 1.1340 -2.7262 3.3712 48 1 0.3189 -1.5189 4.3940 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532664932.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:24 Heat of formation + Delta-G solvation = -74.074700 kcal Electronic energy + Delta-G solvation = -24499.283523 eV Core-core repulsion = 21359.663198 eV Total energy + Delta-G solvation = -3139.620324 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.97801 -38.33571 -35.29359 -33.59430 -32.54723 -31.14721 -30.34539 -27.13908 -27.02738 -26.59173 -26.32808 -23.03048 -22.30308 -22.18808 -20.45388 -18.11529 -17.80987 -16.53965 -16.01147 -15.40739 -14.84812 -14.49777 -14.45114 -14.06367 -13.82877 -13.68567 -13.12122 -12.91442 -12.58742 -12.40011 -12.25027 -11.98948 -11.96528 -11.74325 -11.57039 -11.51207 -11.44408 -11.38622 -11.01182 -10.94052 -10.86924 -10.64918 -10.54745 -10.52612 -10.34152 -10.19676 -9.88440 -9.71459 -9.62836 -9.42292 -8.61702 -8.44201 -7.62071 -6.17105 -4.22708 3.20970 3.30210 3.33566 3.54089 4.00767 4.34289 4.94429 4.99614 5.04472 5.15989 5.39471 5.42619 5.59896 5.66893 5.70567 5.73522 5.77403 5.86793 5.87826 5.91442 5.97893 6.00186 6.03380 6.11019 6.20157 6.21303 6.25344 6.29332 6.31922 6.38011 6.41657 6.48565 6.54177 6.62197 6.66001 6.72013 6.77135 6.83960 6.90954 6.98365 7.06774 7.26686 7.66110 7.80249 8.09098 8.45052 8.83920 9.16966 9.44179 10.89480 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.011478 B = 0.008284 C = 0.005516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.935511 B = 3379.294972 C = 5075.374842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 C -0.164 4.164 4 N -0.594 5.594 5 C 0.237 3.763 6 C -0.528 4.528 7 H 0.062 0.938 8 C 0.066 3.934 9 N -0.891 5.891 10 Si 0.889 3.111 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.525 3.475 15 O -0.574 6.574 16 C -0.098 4.098 17 C -0.103 4.103 18 C -0.104 4.104 19 C -0.067 4.067 20 C -0.140 4.140 21 C -0.144 4.144 22 C -0.103 4.103 23 C -0.109 4.109 24 H 0.075 0.925 25 H 0.048 0.952 26 H 0.055 0.945 27 H 0.080 0.920 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.033 0.967 32 H 0.038 0.962 33 H 0.264 0.736 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.049 0.951 40 H 0.051 0.949 41 H 0.053 0.947 42 H 0.066 0.934 43 H 0.049 0.951 44 H 0.047 0.953 45 H 0.066 0.934 46 H 0.057 0.943 47 H 0.093 0.907 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.863 5.793 7.331 9.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.043 3.957 3 C -0.222 4.222 4 N -0.324 5.324 5 C 0.117 3.883 6 C -0.567 4.567 7 H 0.080 0.920 8 C -0.137 4.137 9 N -0.529 5.529 10 Si 0.717 3.283 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.208 1.208 14 C 0.314 3.686 15 O -0.455 6.455 16 C -0.119 4.119 17 C -0.140 4.140 18 C -0.142 4.142 19 C -0.067 4.067 20 C -0.197 4.197 21 C -0.201 4.201 22 C -0.140 4.140 23 C -0.147 4.147 24 H 0.094 0.906 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.098 0.902 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.113 0.887 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.084 0.916 46 H 0.076 0.924 47 H 0.111 0.889 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.090 6.123 7.330 9.777 hybrid contribution -0.325 -1.178 -0.148 1.231 sum -2.415 4.945 7.182 9.048 Atomic orbital electron populations 1.22167 0.95727 1.02419 1.01818 1.20824 0.94237 0.92229 0.88453 1.22169 1.00620 0.97087 1.02311 1.48364 1.49618 1.30126 1.04282 1.19471 0.89477 0.81226 0.98162 1.21495 0.94432 0.90367 1.50358 0.91972 1.24905 0.94878 0.98968 0.94906 1.69929 1.08967 1.24782 1.49236 0.86566 0.80716 0.83219 0.77797 1.19618 1.20952 1.20792 1.20458 0.80674 0.82591 0.84855 1.90496 1.36878 1.30985 1.87157 1.21217 1.01407 0.96624 0.92626 1.21429 1.01517 0.96939 0.94158 1.21565 0.98358 0.97272 0.96991 1.20559 0.95412 0.95668 0.95017 1.21859 1.00714 1.00057 0.97061 1.21968 0.96528 1.00100 1.01494 1.21556 1.01414 0.96712 0.94365 1.21549 0.97121 0.97958 0.98052 0.90613 0.93342 0.92616 0.90193 0.93226 0.92763 0.91055 0.94855 0.94412 0.92668 0.88705 0.90970 0.92701 0.92014 0.92459 0.93175 0.92991 0.92751 0.91531 0.93231 0.93387 0.91562 0.92395 0.88906 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 9.01 37.16 0.33 -2.61 16 2 C 0.15 2.75 3.27 -67.93 -0.22 2.53 16 3 C -0.16 -2.73 9.12 37.16 0.34 -2.39 16 4 N -0.59 -12.42 2.42 -167.47 -0.41 -12.82 16 5 C 0.24 5.52 4.95 -5.20 -0.03 5.49 16 6 C -0.53 -13.26 7.60 -34.44 -0.26 -13.52 16 7 H 0.06 1.61 7.35 -52.48 -0.39 1.22 16 8 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -24.05 13.29 55.43 0.74 -23.32 16 10 Si 0.89 20.28 29.54 -169.99 -5.02 15.26 16 11 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 13 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 14 C 0.53 10.81 6.04 -10.99 -0.07 10.75 16 15 O -0.57 -12.46 12.56 5.56 0.07 -12.39 16 16 C -0.10 -1.80 1.97 -91.77 -0.18 -1.98 16 17 C -0.10 -1.64 4.58 -26.73 -0.12 -1.76 16 18 C -0.10 -1.43 4.73 -26.73 -0.13 -1.55 16 19 C -0.07 -0.89 0.77 -154.51 -0.12 -1.01 16 20 C -0.14 -1.63 8.47 37.15 0.31 -1.31 16 21 C -0.14 -1.85 7.78 37.16 0.29 -1.56 16 22 C -0.10 -1.61 4.73 -26.70 -0.13 -1.73 16 23 C -0.11 -1.97 4.91 -26.70 -0.13 -2.10 16 24 H 0.07 1.47 6.13 -51.93 -0.32 1.15 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.08 1.49 7.73 -51.93 -0.40 1.09 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.07 1.30 6.43 -51.93 -0.33 0.96 16 31 H 0.03 0.82 7.81 -51.92 -0.41 0.42 16 32 H 0.04 0.92 5.93 -51.93 -0.31 0.61 16 33 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 34 H 0.09 1.88 5.83 -51.93 -0.30 1.58 16 35 H 0.07 1.20 6.14 -51.93 -0.32 0.88 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 42 H 0.07 0.95 4.81 -51.93 -0.25 0.70 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.09 1.93 5.76 -51.93 -0.30 1.64 16 48 H 0.06 1.02 6.43 -51.93 -0.33 0.68 16 LS Contribution 355.16 15.07 5.35 5.35 Total: -1.00 -26.61 355.16 -8.18 -34.79 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -8.71 Total: 4.28 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -0.20 Total: -11.15 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.33 Total: -36.14 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.07 Total: -12.39 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -26.61 -8.18 -34.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532664932.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.286 kcal (2) G-P(sol) polarization free energy of solvation -26.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds