Wall clock time and date at job start Tue Mar 31 2020 06:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47126 * 2 1 4 4 N 1.46502 * 109.47376 * 120.00075 * 2 1 3 5 5 C 1.46501 * 119.99957 * 121.19741 * 4 2 1 6 6 C 1.50695 * 109.47200 * 264.09329 * 5 4 2 7 7 H 1.08005 * 119.99839 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00143 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99992 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00166 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47275 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47201 * 120.00174 * 10 8 6 13 13 H 1.48503 * 109.46745 * 240.00184 * 10 8 6 14 14 C 1.34777 * 119.99833 * 301.20077 * 4 2 1 15 15 O 1.21277 * 119.99954 * 3.82773 * 14 4 2 16 16 C 1.50697 * 119.99654 * 183.82734 * 14 4 2 17 17 C 1.53005 * 109.46836 * 145.86311 * 16 14 4 18 18 C 1.52998 * 109.47224 * 180.02562 * 17 16 14 19 19 C 1.53002 * 109.46945 * 300.00388 * 18 17 16 20 20 C 1.52994 * 109.47259 * 180.02562 * 19 18 17 21 21 C 1.53003 * 109.47189 * 299.99974 * 19 18 17 22 22 C 1.52998 * 109.47702 * 59.99867 * 19 18 17 23 23 C 1.52995 * 109.47106 * 265.86376 * 16 14 4 24 24 H 1.08998 * 109.47273 * 305.04875 * 1 2 3 25 25 H 1.08999 * 109.47404 * 65.04736 * 1 2 3 26 26 H 1.08996 * 109.47052 * 185.04763 * 1 2 3 27 27 H 1.09004 * 109.47286 * 240.00365 * 2 1 3 28 28 H 1.08995 * 109.47132 * 178.52449 * 3 2 1 29 29 H 1.08996 * 109.47206 * 298.52386 * 3 2 1 30 30 H 1.08995 * 109.46842 * 58.52257 * 3 2 1 31 31 H 1.09008 * 109.46978 * 24.09651 * 5 4 2 32 32 H 1.08995 * 109.46810 * 144.09198 * 5 4 2 33 33 H 0.96995 * 119.99664 * 179.97438 * 9 8 6 34 34 H 1.09003 * 109.47318 * 25.86949 * 16 14 4 35 35 H 1.08995 * 109.46931 * 60.00142 * 17 16 14 36 36 H 1.08994 * 109.47448 * 300.00159 * 17 16 14 37 37 H 1.09000 * 109.47353 * 59.99719 * 18 17 16 38 38 H 1.08995 * 109.47494 * 180.02562 * 18 17 16 39 39 H 1.08997 * 109.47637 * 59.99447 * 20 19 18 40 40 H 1.09004 * 109.47788 * 179.97438 * 20 19 18 41 41 H 1.09008 * 109.47151 * 299.99659 * 20 19 18 42 42 H 1.08999 * 109.47076 * 59.99742 * 21 19 18 43 43 H 1.08998 * 109.47339 * 180.02562 * 21 19 18 44 44 H 1.09004 * 109.46659 * 300.00242 * 21 19 18 45 45 H 1.09007 * 109.46976 * 59.99465 * 22 19 18 46 46 H 1.08994 * 109.47673 * 180.02562 * 22 19 18 47 47 H 1.08994 * 109.47362 * 60.00719 * 23 16 14 48 48 H 1.08998 * 109.47402 * 299.99730 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.8822 -1.8662 1.0618 6 6 2.0452 -3.1166 1.1443 7 1 0.9765 -3.0430 1.2826 8 6 2.6435 -4.3547 1.0434 9 7 3.9449 -4.4444 0.8756 10 14 1.6059 -5.9047 1.1450 11 1 0.1803 -5.5345 1.3348 12 1 1.7529 -6.6820 -0.1118 13 1 2.0597 -6.7297 2.2933 14 6 1.6729 -0.2444 2.4201 15 8 0.9025 0.6856 2.5314 16 6 2.2441 -0.9012 3.6503 17 6 2.4453 0.1506 4.7431 18 6 3.0258 -0.5160 5.9919 19 6 2.0595 -1.5920 6.4914 20 6 2.6396 -2.2582 7.7406 21 6 0.7140 -0.9496 6.8349 22 6 1.8582 -2.6439 5.3987 23 6 1.2773 -1.9769 4.1496 24 1 -0.3634 0.5901 0.8413 25 1 -0.3634 0.4335 -0.9317 26 1 -0.3633 -1.0236 0.0904 27 1 1.8934 -0.5138 -0.8900 28 1 3.1296 1.4427 0.0265 29 1 1.6985 1.9487 -0.9029 30 1 1.6552 1.9639 0.8764 31 1 3.3930 -1.8337 0.0994 32 1 3.6195 -1.8689 1.8646 33 1 4.3658 -5.3153 0.8049 34 1 3.2026 -1.3592 3.4060 35 1 1.4869 0.6086 4.9875 36 1 3.1340 0.9169 4.3875 37 1 3.9842 -0.9738 5.7473 38 1 3.1687 0.2332 6.7706 39 1 2.7826 -1.5088 8.5190 40 1 1.9510 -3.0246 8.0968 41 1 3.5983 -2.7159 7.4964 42 1 0.3006 -0.4747 5.9452 43 1 0.0258 -1.7161 7.1911 44 1 0.8574 -0.2003 7.6134 45 1 2.8168 -3.1015 5.1540 46 1 1.1696 -3.4102 5.7544 47 1 1.1340 -2.7262 3.3712 48 1 0.3189 -1.5189 4.3940 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532664932.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:23 Heat of formation + Delta-G solvation = -85.600395 kcal Electronic energy + Delta-G solvation = -24499.783314 eV Core-core repulsion = 21359.663198 eV Total energy + Delta-G solvation = -3140.120116 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.49062 -39.69824 -36.96961 -35.26326 -34.18604 -32.72599 -31.65895 -28.90316 -28.12351 -28.02512 -27.62966 -24.87671 -23.77855 -23.55140 -21.85678 -19.53065 -19.25568 -18.50153 -17.72539 -16.96958 -16.32455 -16.17363 -15.65841 -15.64385 -15.26475 -14.82648 -14.56004 -14.47551 -14.08888 -13.95708 -13.79081 -13.38348 -13.24988 -13.23494 -13.09362 -12.82851 -12.75285 -12.73698 -12.66927 -12.52482 -12.25203 -12.14981 -12.05645 -11.84087 -11.80848 -11.66826 -11.59365 -11.19924 -11.00740 -10.76756 -10.55570 -10.11303 -9.37175 -8.17531 -6.29045 1.37833 1.42079 1.51293 1.87456 2.34198 2.47881 3.12670 3.67727 3.78951 3.83674 4.00371 4.17005 4.25785 4.27083 4.34941 4.40877 4.50281 4.52409 4.62607 4.68271 4.73734 4.78225 4.79502 4.91168 4.93133 4.96753 5.00033 5.00982 5.04990 5.10700 5.13612 5.17204 5.25041 5.26640 5.28803 5.30962 5.34422 5.41341 5.47051 5.55491 5.60990 5.70606 5.73623 5.99662 6.11334 6.63715 6.89633 7.37661 7.52215 8.88201 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.011478 B = 0.008284 C = 0.005516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.935511 B = 3379.294972 C = 5075.374842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.133 3.867 3 C -0.152 4.152 4 N -0.599 5.599 5 C 0.252 3.748 6 C -0.526 4.526 7 H 0.051 0.949 8 C 0.026 3.974 9 N -0.919 5.919 10 Si 0.945 3.055 11 H -0.272 1.272 12 H -0.281 1.281 13 H -0.276 1.276 14 C 0.520 3.480 15 O -0.584 6.584 16 C -0.095 4.095 17 C -0.095 4.095 18 C -0.100 4.100 19 C -0.064 4.064 20 C -0.135 4.135 21 C -0.141 4.141 22 C -0.100 4.100 23 C -0.102 4.102 24 H 0.060 0.940 25 H 0.080 0.920 26 H 0.035 0.965 27 H 0.080 0.920 28 H 0.049 0.951 29 H 0.084 0.916 30 H 0.055 0.945 31 H 0.018 0.982 32 H 0.027 0.973 33 H 0.266 0.734 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.051 0.949 42 H 0.047 0.953 43 H 0.056 0.944 44 H 0.065 0.935 45 H 0.052 0.948 46 H 0.066 0.934 47 H 0.060 0.940 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.300 6.127 8.488 10.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.030 3.970 3 C -0.210 4.210 4 N -0.329 5.329 5 C 0.131 3.869 6 C -0.565 4.565 7 H 0.069 0.931 8 C -0.174 4.174 9 N -0.558 5.558 10 Si 0.771 3.229 11 H -0.196 1.196 12 H -0.206 1.206 13 H -0.202 1.202 14 C 0.310 3.690 15 O -0.467 6.467 16 C -0.116 4.116 17 C -0.133 4.133 18 C -0.138 4.138 19 C -0.064 4.064 20 C -0.193 4.193 21 C -0.198 4.198 22 C -0.137 4.137 23 C -0.140 4.140 24 H 0.079 0.921 25 H 0.099 0.901 26 H 0.054 0.946 27 H 0.098 0.902 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.074 0.926 31 H 0.036 0.964 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.071 0.929 46 H 0.084 0.916 47 H 0.078 0.922 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.535 6.469 8.483 10.965 hybrid contribution -0.213 -1.242 -0.562 1.379 sum -2.748 5.227 7.920 9.880 Atomic orbital electron populations 1.22059 0.95041 1.01097 1.02864 1.21102 0.94848 0.93416 0.87605 1.22053 1.00485 0.95380 1.03041 1.48393 1.49425 1.29662 1.05403 1.19112 0.89292 0.81766 0.96690 1.21560 0.93904 0.91233 1.49806 0.93113 1.25519 0.95741 1.01440 0.94707 1.70010 1.10160 1.25482 1.50194 0.85704 0.79248 0.80128 0.77865 1.19644 1.20645 1.20204 1.20836 0.80466 0.82444 0.85278 1.90483 1.37397 1.31457 1.87345 1.21215 1.00275 0.97356 0.92735 1.21384 1.01466 0.96170 0.94308 1.21563 0.98028 0.97806 0.96368 1.20546 0.95958 0.94894 0.94985 1.21813 1.00576 1.00571 0.96301 1.21928 0.96046 1.00616 1.01176 1.21537 1.00592 0.97522 0.94085 1.21435 0.97301 0.97004 0.98280 0.92088 0.90141 0.94568 0.90168 0.93232 0.89730 0.92640 0.96431 0.95568 0.92492 0.90483 0.91362 0.92800 0.92309 0.90052 0.91404 0.92333 0.92960 0.93443 0.92485 0.91588 0.92942 0.91563 0.92177 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.44 9.01 71.98 0.65 -4.79 16 2 C 0.13 4.99 3.27 44.99 0.15 5.14 16 3 C -0.15 -4.89 9.12 71.98 0.66 -4.23 16 4 N -0.60 -25.62 2.42 -802.14 -1.94 -27.57 16 5 C 0.25 12.16 4.95 85.63 0.42 12.58 16 6 C -0.53 -27.09 7.60 25.60 0.19 -26.89 16 7 H 0.05 2.70 7.35 -2.91 -0.02 2.68 16 8 C 0.03 1.36 5.46 84.65 0.46 1.82 16 9 N -0.92 -50.26 13.29 21.45 0.28 -49.98 16 10 Si 0.94 41.85 29.54 68.60 2.03 43.88 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 12 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 13 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 14 C 0.52 21.84 6.04 87.66 0.53 22.37 16 15 O -0.58 -25.61 12.56 -3.02 -0.04 -25.65 16 16 C -0.09 -3.57 1.97 -11.54 -0.02 -3.59 16 17 C -0.10 -3.00 4.58 30.60 0.14 -2.86 16 18 C -0.10 -2.57 4.73 30.59 0.14 -2.43 16 19 C -0.06 -1.59 0.77 -52.18 -0.04 -1.63 16 20 C -0.14 -2.77 8.47 71.98 0.61 -2.16 16 21 C -0.14 -3.31 7.78 71.98 0.56 -2.75 16 22 C -0.10 -3.08 4.73 30.61 0.14 -2.93 16 23 C -0.10 -3.77 4.91 30.61 0.15 -3.62 16 24 H 0.06 2.35 6.13 -2.39 -0.01 2.34 16 25 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.08 2.98 7.73 -2.38 -0.02 2.96 16 28 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.05 1.97 6.43 -2.39 -0.02 1.96 16 31 H 0.02 0.90 7.81 -2.38 -0.02 0.88 16 32 H 0.03 1.33 5.93 -2.39 -0.01 1.32 16 33 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 34 H 0.08 3.18 5.83 -2.39 -0.01 3.16 16 35 H 0.07 2.21 6.14 -2.39 -0.01 2.20 16 36 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 41 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 42 H 0.05 1.30 4.81 -2.39 -0.01 1.29 16 43 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 46 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.06 2.59 5.76 -2.39 -0.01 2.58 16 48 H 0.06 2.08 6.43 -2.39 -0.02 2.06 16 Total: -1.00 -57.06 355.16 5.99 -51.08 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: 0.91 Total: 24.20 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: 4.75 Total: -15.96 kcal Atomic # 7 Polarization: -75.89 SS G_CDS: -1.66 Total: -77.55 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.04 Total: -25.65 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -57.06 5.99 -51.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532664932.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.523 kcal (2) G-P(sol) polarization free energy of solvation -57.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds