Wall clock time and date at job start Tue Mar 31 2020 06:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47166 * 2 1 4 4 N 1.46502 * 109.47135 * 120.00331 * 2 1 3 5 5 C 1.46498 * 119.99981 * 115.61892 * 4 2 1 6 6 C 1.50696 * 109.47331 * 276.40331 * 5 4 2 7 7 H 1.07995 * 120.00138 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00088 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99755 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00042 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47222 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46900 * 119.99827 * 10 8 6 13 13 H 1.48500 * 109.47386 * 239.99604 * 10 8 6 14 14 C 1.34776 * 119.99866 * 295.61932 * 4 2 1 15 15 O 1.21286 * 119.99743 * 4.94182 * 14 4 2 16 16 C 1.50695 * 120.00054 * 185.21240 * 14 4 2 17 17 H 1.09005 * 109.47512 * 306.10962 * 16 14 4 18 18 C 1.53003 * 109.46919 * 66.11056 * 16 14 4 19 19 C 1.53001 * 109.46994 * 180.02562 * 18 16 14 20 20 C 1.52998 * 109.47347 * 299.99622 * 19 18 16 21 21 C 1.53003 * 109.46765 * 60.00237 * 20 19 18 22 22 C 1.53006 * 109.46977 * 180.02562 * 21 20 19 23 23 C 1.52998 * 109.47514 * 60.00153 * 21 20 19 24 24 C 1.52998 * 109.47454 * 186.10698 * 16 14 4 25 25 H 1.08997 * 109.46759 * 307.92213 * 1 2 3 26 26 H 1.08996 * 109.47496 * 67.92232 * 1 2 3 27 27 H 1.09004 * 109.47282 * 187.92661 * 1 2 3 28 28 H 1.09000 * 109.46870 * 239.99746 * 2 1 3 29 29 H 1.09007 * 109.46972 * 183.03621 * 3 2 1 30 30 H 1.09001 * 109.47427 * 303.03136 * 3 2 1 31 31 H 1.08998 * 109.47223 * 63.03621 * 3 2 1 32 32 H 1.09006 * 109.47187 * 36.40859 * 5 4 2 33 33 H 1.09007 * 109.46741 * 156.40493 * 5 4 2 34 34 H 0.96999 * 119.99843 * 179.97438 * 9 8 6 35 35 H 1.08996 * 109.47363 * 299.99606 * 18 16 14 36 36 H 1.09001 * 109.47236 * 60.00151 * 18 16 14 37 37 H 1.09004 * 109.47147 * 179.97438 * 19 18 16 38 38 H 1.09005 * 109.47544 * 59.99841 * 19 18 16 39 39 H 1.09001 * 109.47315 * 300.00198 * 20 19 18 40 40 H 1.09000 * 109.47556 * 179.97438 * 20 19 18 41 41 H 1.09004 * 109.47082 * 179.97438 * 22 21 20 42 42 H 1.08992 * 109.46805 * 299.99813 * 22 21 20 43 43 H 1.09005 * 109.46954 * 60.00212 * 22 21 20 44 44 H 1.09001 * 109.46749 * 300.00126 * 23 21 20 45 45 H 1.09003 * 109.46797 * 59.99627 * 23 21 20 46 46 H 1.08996 * 109.47518 * 180.02562 * 23 21 20 47 47 H 1.09001 * 109.47315 * 300.00224 * 24 16 14 48 48 H 1.09004 * 109.46870 * 60.00012 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.7797 -1.9353 1.0638 6 6 1.8271 -3.0944 0.9230 7 1 0.7611 -2.9213 0.9308 8 6 2.3164 -4.3760 0.7841 9 7 3.6145 -4.5867 0.7741 10 14 1.1355 -5.8128 0.6103 11 1 -0.2621 -5.3127 0.6512 12 1 1.3776 -6.4986 -0.6845 13 1 1.3523 -6.7695 1.7252 14 6 1.7671 -0.1811 2.4183 15 8 1.0618 0.7989 2.5334 16 6 2.3676 -0.8252 3.6412 17 1 2.1163 -1.8858 3.6538 18 6 3.8885 -0.6617 3.6089 19 6 4.4982 -1.3162 4.8502 20 6 3.9398 -0.6454 6.1069 21 6 2.4189 -0.8089 6.1391 22 6 1.8604 -0.1375 7.3955 23 6 2.0661 -2.2975 6.1561 24 6 1.8091 -0.1538 4.8975 25 1 -0.3633 0.6316 0.8107 26 1 -0.3634 0.3862 -0.9522 27 1 -0.3634 -1.0179 0.1417 28 1 1.8933 -0.5139 -0.8900 29 1 3.1287 1.4429 -0.0544 30 1 1.6330 1.9718 -0.8616 31 1 1.7218 1.9403 0.9159 32 1 3.4169 -1.8793 0.1812 33 1 3.3982 -2.0788 1.9499 34 1 3.9588 -5.4883 0.6767 35 1 4.2865 -1.1400 2.7140 36 1 4.1398 0.3989 3.5964 37 1 5.5818 -1.2002 4.8271 38 1 4.2469 -2.3768 4.8624 39 1 4.1911 0.4152 6.0948 40 1 4.3738 -1.1120 6.9912 41 1 0.7767 -0.2536 7.4182 42 1 2.2947 -0.6034 8.2799 43 1 2.1116 0.9231 7.3829 44 1 2.4640 -2.7754 5.2609 45 1 2.5005 -2.7638 7.0405 46 1 0.9826 -2.4140 6.1786 47 1 2.0604 0.9067 4.8850 48 1 0.7256 -0.2702 4.9205 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000535919951.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:36 Heat of formation + Delta-G solvation = -69.962791 kcal Electronic energy + Delta-G solvation = -24505.439251 eV Core-core repulsion = 21365.997232 eV Total energy + Delta-G solvation = -3139.442018 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.10634 -38.28944 -35.29334 -33.61656 -32.72386 -31.38735 -30.17863 -27.11011 -26.99258 -26.54108 -26.08798 -23.69448 -22.66478 -21.28035 -20.80693 -18.06657 -17.84119 -16.63348 -15.93197 -15.45625 -14.80251 -14.57101 -14.44773 -14.20453 -13.89392 -13.69189 -13.06496 -12.94133 -12.72029 -12.51990 -12.27156 -12.17203 -11.86006 -11.78275 -11.67194 -11.45137 -11.33958 -11.14208 -11.07484 -10.91292 -10.77440 -10.71510 -10.62861 -10.54272 -10.33658 -10.19920 -9.89929 -9.77031 -9.72124 -9.44988 -8.63967 -8.44459 -7.60404 -6.16395 -4.22438 3.21488 3.30388 3.34397 3.52240 4.00223 4.35211 4.90496 4.95497 4.99258 5.16326 5.33653 5.46163 5.48613 5.65193 5.65859 5.70440 5.75415 5.81629 5.85717 5.89988 5.92249 5.96644 6.04060 6.11146 6.13773 6.18186 6.27235 6.28504 6.30090 6.37932 6.42078 6.50088 6.51918 6.56767 6.58888 6.62846 6.72805 6.81394 6.87592 6.91378 6.98200 7.27833 7.68165 7.79981 8.10138 8.48186 8.84282 9.14852 9.45148 10.89979 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.012445 B = 0.007451 C = 0.005566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.383829 B = 3757.141997 C = 5029.177578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.149 3.851 3 C -0.168 4.168 4 N -0.591 5.591 5 C 0.224 3.776 6 C -0.533 4.533 7 H 0.061 0.939 8 C 0.065 3.935 9 N -0.891 5.891 10 Si 0.892 3.108 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.522 3.478 15 O -0.572 6.572 16 C -0.104 4.104 17 H 0.106 0.894 18 C -0.115 4.115 19 C -0.118 4.118 20 C -0.106 4.106 21 C -0.066 4.066 22 C -0.138 4.138 23 C -0.147 4.147 24 C -0.082 4.082 25 H 0.067 0.933 26 H 0.048 0.952 27 H 0.058 0.942 28 H 0.080 0.920 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.029 0.971 33 H 0.057 0.943 34 H 0.264 0.736 35 H 0.085 0.915 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.053 0.947 42 H 0.050 0.950 43 H 0.051 0.949 44 H 0.069 0.931 45 H 0.049 0.951 46 H 0.052 0.948 47 H 0.063 0.937 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.590 6.765 7.400 10.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.045 3.955 3 C -0.226 4.226 4 N -0.322 5.322 5 C 0.104 3.896 6 C -0.571 4.571 7 H 0.079 0.921 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.720 3.280 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.208 1.208 14 C 0.311 3.689 15 O -0.454 6.454 16 C -0.125 4.125 17 H 0.124 0.876 18 C -0.152 4.152 19 C -0.156 4.156 20 C -0.143 4.143 21 C -0.066 4.066 22 C -0.195 4.195 23 C -0.204 4.204 24 C -0.120 4.120 25 H 0.086 0.914 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.099 0.901 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.047 0.953 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.088 0.912 45 H 0.068 0.932 46 H 0.071 0.929 47 H 0.082 0.918 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.378 7.107 7.407 10.272 hybrid contribution -0.557 -1.130 -0.319 1.299 sum -0.180 5.978 7.088 9.274 Atomic orbital electron populations 1.22143 0.95906 1.02543 1.01288 1.20777 0.94100 0.92176 0.88469 1.22212 1.00333 0.97080 1.02938 1.48301 1.53972 1.25545 1.04336 1.19759 0.91547 0.79295 0.98958 1.21558 0.93620 0.91298 1.50666 0.92124 1.24918 0.95136 0.98773 0.94976 1.69928 1.11482 1.21763 1.49840 0.86523 0.81332 0.82350 0.77793 1.19723 1.20916 1.20848 1.20460 0.80257 0.83430 0.84781 1.90507 1.39872 1.28223 1.86773 1.21281 0.96096 1.02447 0.92702 0.87634 1.21692 0.93492 1.00648 0.99386 1.21550 0.99261 1.00659 0.94086 1.21592 0.94573 1.00402 0.97757 1.20568 0.95226 0.95796 0.95007 1.21837 1.00696 1.00132 0.96872 1.21998 1.01229 0.95093 1.02118 1.21346 0.99709 0.99226 0.91682 0.91365 0.93316 0.92329 0.90135 0.93411 0.92826 0.90399 0.95252 0.92517 0.92677 0.89693 0.92575 0.92237 0.91116 0.92361 0.92485 0.92829 0.93047 0.92943 0.91248 0.93230 0.92923 0.91792 0.91951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 9.07 37.16 0.34 -2.63 16 2 C 0.15 2.84 3.27 -67.93 -0.22 2.62 16 3 C -0.17 -2.84 9.09 37.16 0.34 -2.50 16 4 N -0.59 -12.40 2.41 -167.47 -0.40 -12.81 16 5 C 0.22 5.23 4.55 -5.20 -0.02 5.21 16 6 C -0.53 -13.75 9.37 -34.44 -0.32 -14.07 16 7 H 0.06 1.62 7.61 -52.49 -0.40 1.22 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 9 N -0.89 -24.16 13.29 55.43 0.74 -23.43 16 10 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 14 C 0.52 10.71 6.38 -10.99 -0.07 10.64 16 15 O -0.57 -12.44 12.29 5.55 0.07 -12.37 16 16 C -0.10 -1.88 1.41 -91.77 -0.13 -2.01 16 17 H 0.11 2.09 5.97 -51.93 -0.31 1.78 16 18 C -0.11 -1.88 4.81 -26.73 -0.13 -2.01 16 19 C -0.12 -1.68 5.65 -26.73 -0.15 -1.83 16 20 C -0.11 -1.34 4.73 -26.73 -0.13 -1.47 16 21 C -0.07 -0.88 0.77 -154.48 -0.12 -1.00 16 22 C -0.14 -1.59 8.47 37.16 0.31 -1.28 16 23 C -0.15 -2.02 7.78 37.16 0.29 -1.73 16 24 C -0.08 -1.30 3.33 -26.71 -0.09 -1.39 16 25 H 0.07 1.33 6.55 -51.93 -0.34 0.99 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 1.17 7.94 -51.93 -0.41 0.76 16 28 H 0.08 1.54 7.86 -51.93 -0.41 1.13 16 29 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 1.45 5.94 -51.93 -0.31 1.14 16 32 H 0.03 0.73 8.02 -51.93 -0.42 0.31 16 33 H 0.06 1.32 3.98 -51.92 -0.21 1.12 16 34 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 35 H 0.08 1.55 5.36 -51.93 -0.28 1.27 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 1.07 6.43 -51.93 -0.33 0.74 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 1.07 4.81 -51.93 -0.25 0.82 16 45 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.06 1.05 8.03 -51.93 -0.42 0.63 16 48 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 355.65 15.07 5.36 5.36 Total: -1.00 -27.10 355.65 -8.17 -35.27 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -8.71 Total: 4.29 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: -0.20 Total: -11.86 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.33 Total: -36.23 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.07 Total: -12.37 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -27.10 -8.17 -35.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535919951.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.693 kcal (2) G-P(sol) polarization free energy of solvation -27.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds