Wall clock time and date at job start Tue Mar 31 2020 05:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47555 * 2 1 4 4 C 1.52991 * 109.47290 * 174.39660 * 3 2 1 5 5 H 1.09001 * 109.47151 * 306.22760 * 4 3 2 6 6 C 1.50702 * 109.47215 * 186.23339 * 4 3 2 7 7 O 1.21280 * 119.99716 * 321.88061 * 6 4 3 8 8 N 1.34773 * 120.00121 * 141.88833 * 6 4 3 9 9 C 1.46922 * 120.63507 * 5.41136 * 8 6 4 10 10 C 1.53624 * 108.54565 * 126.37173 * 9 8 6 11 11 C 1.53037 * 109.23974 * 54.85839 * 10 9 8 12 12 C 1.50697 * 109.44723 * 178.49786 * 11 10 9 13 13 H 1.08005 * 120.00273 * 120.05990 * 12 11 10 14 14 C 1.37874 * 120.00220 * 300.06409 * 12 11 10 15 15 N 1.31514 * 120.00188 * 0.02562 * 14 12 11 16 16 Si 1.86812 * 120.00128 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.46926 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.46762 * 119.99990 * 16 14 12 19 19 H 1.48496 * 109.46774 * 239.99980 * 16 14 12 20 20 C 1.53036 * 109.54158 * 298.51341 * 11 10 9 21 21 C 1.46926 * 120.62981 * 185.69588 * 8 6 4 22 22 C 1.52999 * 109.47364 * 66.23016 * 4 3 2 23 23 C 1.52999 * 109.47234 * 63.82516 * 22 4 3 24 24 C 1.52997 * 109.47220 * 183.82614 * 22 4 3 25 25 H 1.09003 * 109.47143 * 59.99953 * 1 2 3 26 26 H 1.08994 * 109.47723 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47218 * 300.00182 * 1 2 3 28 28 H 1.09005 * 109.46746 * 239.99646 * 2 1 3 29 29 H 1.09000 * 109.46783 * 120.00421 * 2 1 3 30 30 H 1.09008 * 109.47000 * 294.39865 * 3 2 1 31 31 H 1.09004 * 109.47034 * 54.39455 * 3 2 1 32 32 H 1.09001 * 109.59333 * 246.20900 * 9 8 6 33 33 H 1.09007 * 109.58294 * 6.63048 * 9 8 6 34 34 H 1.09006 * 109.63443 * 294.86693 * 10 9 8 35 35 H 1.09006 * 109.43362 * 174.72989 * 10 9 8 36 36 H 1.08997 * 109.46207 * 58.53627 * 11 10 9 37 37 H 0.96996 * 120.00315 * 180.02562 * 15 14 12 38 38 H 1.09006 * 109.49743 * 301.41522 * 20 11 10 39 39 H 1.08998 * 109.50012 * 181.32023 * 20 11 10 40 40 H 1.09003 * 109.58727 * 353.37240 * 21 8 6 41 41 H 1.09006 * 109.58318 * 113.65270 * 21 8 6 42 42 H 1.08996 * 109.47074 * 303.82781 * 22 4 3 43 43 H 1.09004 * 109.46968 * 63.33659 * 23 22 4 44 44 H 1.08992 * 109.47139 * 183.33648 * 23 22 4 45 45 H 1.08997 * 109.47175 * 303.34293 * 23 22 4 46 46 H 1.09002 * 109.47168 * 63.03155 * 24 22 4 47 47 H 1.09005 * 109.47462 * 183.03058 * 24 22 4 48 48 H 1.08999 * 109.47738 * 303.03274 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5635 1.4447 0.1408 5 1 3.8480 0.8651 1.0191 6 6 4.0517 2.8621 0.2946 7 8 3.5295 3.7553 -0.3381 8 7 5.0687 3.1371 1.1352 9 6 5.7890 2.0540 1.8184 10 6 7.2912 2.2143 1.5393 11 6 7.7335 3.6203 1.9511 12 6 9.2140 3.7702 1.7136 13 1 9.5784 4.5300 1.0380 14 6 10.1035 2.9374 2.3587 15 7 9.6599 2.0117 3.1809 16 14 11.9390 3.1237 2.0648 17 1 12.1765 4.2307 1.1039 18 1 12.6173 3.4302 3.3498 19 1 12.4819 1.8588 1.5077 20 6 6.9761 4.6589 1.1206 21 6 5.4741 4.5260 1.3905 22 6 4.1920 0.8213 -1.1071 23 6 3.8718 1.6880 -2.3266 24 6 5.7088 0.7363 -0.9260 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 1.7610 1.9265 -0.9360 31 1 1.5971 1.9845 0.8356 32 1 5.6056 2.1129 2.8912 33 1 5.4462 1.0912 1.4393 34 1 7.4838 2.0690 0.4762 35 1 7.8479 1.4745 2.1147 36 1 7.5180 3.7736 3.0085 37 1 10.2857 1.4261 3.6350 38 1 7.1716 4.4907 0.0615 39 1 7.3086 5.6592 1.3980 40 1 4.9233 5.1949 0.7292 41 1 5.2631 4.7832 2.4286 42 1 3.7872 -0.1796 -1.2564 43 1 4.3271 2.6707 -2.2035 44 1 4.2687 1.2135 -3.2239 45 1 2.7914 1.7975 -2.4210 46 1 5.9385 0.0755 -0.0900 47 1 6.1619 0.3422 -1.8357 48 1 6.1069 1.7305 -0.7231 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541985508.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:16 Heat of formation + Delta-G solvation = -71.002541 kcal Electronic energy + Delta-G solvation = -24090.707731 eV Core-core repulsion = 20951.220625 eV Total energy + Delta-G solvation = -3139.487105 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.31502 -37.30380 -36.21057 -33.86051 -33.43036 -31.27961 -30.09028 -29.34923 -26.95135 -26.30129 -24.52834 -22.86605 -22.23434 -21.84074 -20.58527 -19.00037 -17.80176 -17.01275 -16.23861 -15.65163 -15.35758 -15.09175 -14.55627 -13.93918 -13.87859 -13.58984 -13.39073 -13.15864 -13.01681 -12.77088 -12.49799 -12.20745 -12.04946 -11.89402 -11.74754 -11.63438 -11.36313 -11.29147 -11.10731 -11.00224 -10.88925 -10.67878 -10.61464 -10.40262 -10.35934 -10.14978 -10.06509 -9.62640 -9.16364 -9.12734 -8.85971 -8.37568 -7.93126 -6.04083 -4.10011 3.06513 3.26186 3.34898 3.39070 3.53498 4.40107 4.68179 4.73376 4.90585 5.05919 5.10609 5.17174 5.25810 5.31633 5.49893 5.59251 5.65122 5.71850 5.74210 5.80602 5.83711 5.86234 5.89432 5.96377 6.01307 6.11303 6.13611 6.16620 6.17517 6.20764 6.28253 6.32616 6.35492 6.47962 6.55507 6.59274 6.69600 6.92369 7.06194 7.19008 7.29563 7.66664 7.92426 8.00008 8.04665 8.39927 8.66252 8.93678 9.55231 11.01273 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.026607 B = 0.004376 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.115310 B = 6397.455137 C = 6614.199616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.103 4.103 4 C -0.107 4.107 5 H 0.090 0.910 6 C 0.520 3.480 7 O -0.558 6.558 8 N -0.600 5.600 9 C 0.096 3.904 10 C -0.124 4.124 11 C 0.048 3.952 12 C -0.510 4.510 13 H 0.055 0.945 14 C 0.062 3.938 15 N -0.891 5.891 16 Si 0.889 3.111 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.284 1.284 20 C -0.122 4.122 21 C 0.111 3.889 22 C -0.081 4.081 23 C -0.149 4.149 24 C -0.163 4.163 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.045 0.955 35 H 0.103 0.897 36 H 0.026 0.974 37 H 0.259 0.741 38 H 0.051 0.949 39 H 0.058 0.942 40 H 0.077 0.923 41 H 0.057 0.943 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.048 0.952 45 H 0.057 0.943 46 H 0.060 0.940 47 H 0.054 0.946 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.311 -5.290 -4.994 15.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.141 4.141 4 C -0.128 4.128 5 H 0.108 0.892 6 C 0.308 3.692 7 O -0.437 6.437 8 N -0.332 5.332 9 C -0.026 4.026 10 C -0.162 4.162 11 C 0.030 3.970 12 C -0.549 4.549 13 H 0.073 0.927 14 C -0.139 4.139 15 N -0.531 5.531 16 Si 0.717 3.283 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.160 4.160 21 C -0.012 4.012 22 C -0.100 4.100 23 C -0.206 4.206 24 C -0.220 4.220 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.121 0.879 36 H 0.044 0.956 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.076 0.924 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.068 0.932 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.073 0.927 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.497 -4.946 -5.194 15.285 hybrid contribution 1.211 -0.021 0.060 1.213 sum -12.286 -4.967 -5.134 14.212 Atomic orbital electron populations 1.21762 0.95986 1.01315 1.01817 1.21578 0.95685 0.96815 1.02125 1.21506 0.92740 0.96674 1.03206 1.21494 0.96777 0.94234 1.00280 0.89212 1.20458 0.79361 0.90646 0.78697 1.90608 1.58471 1.48403 1.46212 1.48269 1.32498 1.08178 1.44257 1.22300 0.95398 0.88771 0.96143 1.22155 0.90263 1.03050 1.00727 1.18633 0.93964 0.89749 0.94666 1.21247 0.91034 1.16674 1.25904 0.92718 1.24948 0.98670 0.95285 0.95004 1.69844 1.34113 1.20119 1.28981 0.86584 0.85754 0.77967 0.77996 1.19853 1.21075 1.21061 1.21989 0.92385 1.00786 1.00872 1.21670 0.97137 0.82156 1.00199 1.21039 0.96127 0.99106 0.93719 1.21930 1.01710 1.00498 0.96496 1.22223 0.94568 1.03505 1.01703 0.92790 0.92930 0.92831 0.91724 0.92009 0.90543 0.92059 0.92336 0.90768 0.93680 0.87939 0.95585 0.93072 0.93041 0.92336 0.90483 0.92440 0.90464 0.91746 0.93247 0.92422 0.92108 0.92707 0.91010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 37.16 0.37 -0.93 16 2 C -0.12 -1.19 5.58 -26.73 -0.15 -1.34 16 3 C -0.10 -1.24 4.15 -26.74 -0.11 -1.35 16 4 C -0.11 -1.44 1.59 -91.78 -0.15 -1.58 16 5 H 0.09 1.14 6.00 -51.93 -0.31 0.83 16 6 C 0.52 8.88 5.08 -10.99 -0.06 8.83 16 7 O -0.56 -10.93 14.34 5.56 0.08 -10.85 16 8 N -0.60 -10.66 2.67 -172.50 -0.46 -11.12 16 9 C 0.10 1.68 5.13 -3.49 -0.02 1.66 16 10 C -0.12 -2.64 4.94 -26.39 -0.13 -2.78 16 11 C 0.05 1.14 2.06 -91.74 -0.19 0.95 16 12 C -0.51 -13.49 8.56 -34.44 -0.29 -13.78 16 13 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 14 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 15 N -0.89 -24.15 11.30 55.43 0.63 -23.52 16 16 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 17 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 20 C -0.12 -2.51 5.30 -26.61 -0.14 -2.65 16 21 C 0.11 2.04 6.44 -3.71 -0.02 2.02 16 22 C -0.08 -1.03 2.57 -90.62 -0.23 -1.26 16 23 C -0.15 -1.98 8.34 37.16 0.31 -1.67 16 24 C -0.16 -2.28 7.40 37.16 0.28 -2.01 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.59 6.79 -51.93 -0.35 0.23 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.99 6.10 -51.92 -0.32 0.67 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.07 1.13 3.53 -51.93 -0.18 0.95 16 34 H 0.04 0.98 6.17 -51.93 -0.32 0.66 16 35 H 0.10 2.46 6.03 -51.93 -0.31 2.15 16 36 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 38 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.08 1.43 7.00 -51.93 -0.36 1.06 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.08 0.83 6.56 -51.93 -0.34 0.49 16 43 H 0.06 1.04 6.51 -51.93 -0.34 0.70 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.73 6.25 -51.93 -0.32 0.41 16 46 H 0.06 0.82 6.97 -51.93 -0.36 0.46 16 47 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.07 1.20 4.60 -51.93 -0.24 0.97 16 LS Contribution 347.79 15.07 5.24 5.24 Total: -1.00 -27.88 347.79 -8.55 -36.43 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -8.38 Total: 2.45 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: -0.63 Total: -14.35 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: 0.17 Total: -34.64 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.08 Total: -10.85 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -27.88 -8.55 -36.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541985508.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.572 kcal (2) G-P(sol) polarization free energy of solvation -27.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds