Wall clock time and date at job start Tue Mar 31 2020 06:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47026 * 2 1 4 4 H 1.08999 * 109.47123 * 185.15653 * 3 2 1 5 5 C 1.50693 * 109.47464 * 305.16039 * 3 2 1 6 6 H 1.08004 * 120.00060 * 120.00020 * 5 3 2 7 7 C 1.37880 * 120.00373 * 300.00324 * 5 3 2 8 8 N 1.31523 * 119.99404 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00435 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47039 * 59.99978 * 9 7 5 11 11 H 1.48501 * 109.47155 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47163 * 299.99875 * 9 7 5 13 13 N 1.46899 * 109.47282 * 65.16349 * 3 2 1 14 14 C 1.46901 * 111.00598 * 85.90397 * 13 3 2 15 15 C 1.52998 * 109.47777 * 174.71932 * 14 13 3 16 16 H 1.09003 * 110.54283 * 303.60030 * 15 14 13 17 17 C 1.55010 * 110.61539 * 180.55729 * 15 14 13 18 18 C 1.54860 * 102.10182 * 204.59486 * 17 15 14 19 19 C 1.53895 * 104.10014 * 20.85491 * 18 17 15 20 20 C 1.52760 * 109.71819 * 121.40529 * 19 18 17 21 21 C 1.53052 * 109.46626 * 180.20983 * 20 19 18 22 22 C 1.52996 * 109.44768 * 300.45987 * 21 20 19 23 23 C 1.53008 * 109.54040 * 60.23247 * 22 21 20 24 24 C 1.52774 * 109.69337 * 242.55618 * 19 18 17 25 25 O 1.43527 * 107.52983 * 1.96742 * 19 18 17 26 26 H 1.09003 * 109.47149 * 294.84707 * 1 2 3 27 27 H 1.08994 * 109.47215 * 174.84589 * 1 2 3 28 28 H 1.09004 * 109.47430 * 54.84797 * 1 2 3 29 29 H 1.08996 * 109.47254 * 120.00037 * 2 1 3 30 30 H 1.08990 * 109.47244 * 240.00290 * 2 1 3 31 31 H 0.96997 * 119.99333 * 180.02562 * 8 7 5 32 32 H 1.00908 * 110.99770 * 321.94946 * 13 3 2 33 33 H 1.08998 * 109.46976 * 294.72703 * 14 13 3 34 34 H 1.09004 * 109.46501 * 54.72073 * 14 13 3 35 35 H 1.09002 * 110.90512 * 322.79769 * 17 15 14 36 36 H 1.09001 * 110.90572 * 86.39122 * 17 15 14 37 37 H 1.09005 * 110.50312 * 262.20629 * 18 17 15 38 38 H 1.08993 * 110.50732 * 139.50688 * 18 17 15 39 39 H 1.08999 * 109.47218 * 300.20823 * 20 19 18 40 40 H 1.08999 * 109.46849 * 60.21008 * 20 19 18 41 41 H 1.09003 * 109.47338 * 180.46730 * 21 20 19 42 42 H 1.08993 * 109.47341 * 60.45329 * 21 20 19 43 43 H 1.08995 * 109.46191 * 300.21048 * 22 21 20 44 44 H 1.09001 * 109.45337 * 180.25152 * 22 21 20 45 45 H 1.09001 * 109.47290 * 179.76404 * 23 22 21 46 46 H 1.09001 * 109.47433 * 59.74994 * 23 22 21 47 47 H 1.08997 * 109.47439 * 299.76031 * 24 19 18 48 48 H 1.09000 * 109.47431 * 59.77074 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1260 1.4439 -0.0924 5 6 1.4360 2.1889 -1.1615 6 1 0.8269 3.0629 -0.9838 7 6 1.6610 1.7561 -2.4511 8 7 2.4032 0.6920 -2.6675 9 14 0.9119 2.6808 -3.8908 10 1 1.4064 4.0811 -3.8910 11 1 1.3019 2.0185 -5.1615 12 1 -0.5677 2.6784 -3.7647 13 7 1.6547 2.0981 1.2569 14 6 2.6433 1.8369 2.3116 15 6 2.2792 2.6395 3.5622 16 1 2.2081 3.7017 3.3278 17 6 3.3147 2.3938 4.6891 18 6 2.4915 2.7119 5.9616 19 6 1.0282 2.5682 5.5072 20 6 0.3268 1.5090 6.3554 21 6 -1.1260 1.3670 5.8953 22 6 -1.8416 2.7110 6.0457 23 6 -1.1401 3.7634 5.1847 24 6 0.3125 3.9110 5.6435 25 8 1.0410 2.1605 4.1311 26 1 -0.3633 0.4318 0.9326 27 1 -0.3633 -1.0234 -0.0923 28 1 -0.3634 0.5917 -0.8403 29 1 1.8933 -0.5138 0.8899 30 1 1.8933 -0.5137 -0.8899 31 1 2.5618 0.3878 -3.5748 32 1 0.7320 1.8103 1.5468 33 1 2.6470 0.7734 2.5506 34 1 3.6326 2.1346 1.9640 35 1 3.6485 1.3561 4.6911 36 1 4.1618 3.0731 4.5939 37 1 2.6882 3.7296 6.2991 38 1 2.7179 1.9961 6.7517 39 1 0.8392 0.5538 6.2408 40 1 0.3485 1.8096 7.4029 41 1 -1.6290 0.6172 6.5060 42 1 -1.1477 1.0587 4.8501 43 1 -1.8164 3.0209 7.0903 44 1 -2.8775 2.6089 5.7222 45 1 -1.6532 4.7194 5.2893 46 1 -1.1616 3.4517 4.1404 47 1 0.3339 4.2300 6.6855 48 1 0.8150 4.6550 5.0253 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563365764.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:32 Heat of formation + Delta-G solvation = -77.581952 kcal Electronic energy + Delta-G solvation = -23752.639961 eV Core-core repulsion = 20612.867551 eV Total energy + Delta-G solvation = -3139.772410 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.31230 -36.96674 -35.92008 -32.69335 -32.10779 -31.08387 -30.79930 -29.64217 -27.04121 -25.43537 -23.30892 -22.80776 -22.70074 -20.86899 -20.79692 -19.30833 -19.13541 -16.37063 -16.23107 -15.68889 -14.87255 -14.65972 -14.64426 -14.40101 -13.97828 -13.78833 -13.38998 -13.13742 -12.75158 -12.62319 -12.25886 -12.18026 -12.07144 -11.94311 -11.68345 -11.52890 -11.19882 -11.13882 -11.06956 -10.87951 -10.82147 -10.58359 -10.45297 -10.38424 -10.21319 -9.98898 -9.88250 -9.62784 -9.45658 -9.22217 -8.89847 -8.27645 -7.09119 -5.91051 -3.92101 3.38470 3.42361 3.45976 3.98277 4.49326 4.58581 4.62791 4.77443 4.90104 4.93492 5.03441 5.20191 5.31702 5.39085 5.40377 5.48001 5.52218 5.64121 5.66458 5.72327 5.73623 5.80009 5.83145 5.91927 5.95675 5.99733 6.16236 6.19025 6.21783 6.28304 6.35287 6.37457 6.45903 6.47288 6.50874 6.57688 6.67004 7.01286 7.31052 7.37308 7.38234 7.60962 7.78823 7.96425 8.37303 8.68393 8.73174 9.13625 9.71210 11.15991 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.022139 B = 0.004240 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.454970 B = 6601.980554 C = 6928.602304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.144 4.144 3 C 0.215 3.785 4 H 0.030 0.970 5 C -0.486 4.486 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.683 5.683 14 C 0.069 3.931 15 C 0.082 3.918 16 H 0.073 0.927 17 C -0.151 4.151 18 C -0.146 4.146 19 C 0.106 3.894 20 C -0.107 4.107 21 C -0.118 4.118 22 C -0.117 4.117 23 C -0.117 4.117 24 C -0.126 4.126 25 O -0.352 6.352 26 H 0.029 0.971 27 H 0.021 0.979 28 H 0.068 0.932 29 H 0.009 0.991 30 H 0.091 0.909 31 H 0.258 0.742 32 H 0.334 0.666 33 H 0.023 0.977 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.056 0.944 42 H 0.073 0.927 43 H 0.054 0.946 44 H 0.058 0.942 45 H 0.056 0.944 46 H 0.075 0.925 47 H 0.063 0.937 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.568 2.762 19.184 19.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.183 4.183 3 C 0.107 3.893 4 H 0.048 0.952 5 C -0.525 4.525 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.314 5.314 14 C -0.062 4.062 15 C 0.024 3.976 16 H 0.091 0.909 17 C -0.189 4.189 18 C -0.184 4.184 19 C 0.066 3.934 20 C -0.144 4.144 21 C -0.155 4.155 22 C -0.154 4.154 23 C -0.154 4.154 24 C -0.164 4.164 25 O -0.271 6.271 26 H 0.048 0.952 27 H 0.041 0.959 28 H 0.086 0.914 29 H 0.028 0.972 30 H 0.109 0.891 31 H 0.068 0.932 32 H 0.152 0.848 33 H 0.041 0.959 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.092 0.908 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.094 0.906 47 H 0.082 0.918 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.388 3.146 18.735 19.147 hybrid contribution -0.310 -0.411 -0.493 0.713 sum -2.698 2.735 18.242 18.642 Atomic orbital electron populations 1.21584 0.97684 0.98529 1.00859 1.22079 0.95062 1.01153 1.00037 1.19203 0.95727 0.88619 0.85740 0.95230 1.21044 1.30349 1.11386 0.89704 0.92147 1.24914 0.95618 0.95187 0.98686 1.69884 1.39141 1.24057 1.20654 0.86639 0.79575 0.79962 0.81666 1.20407 1.21569 1.20408 1.60782 1.04260 1.62975 1.03341 1.21895 0.97404 0.96346 0.90515 1.23283 0.82683 0.98746 0.92840 0.90873 1.23155 0.98708 1.02531 0.94489 1.22987 0.94739 1.02178 0.98489 1.21814 0.93923 0.93843 0.83778 1.21613 0.96244 0.98505 0.98046 1.21477 0.94722 0.96854 1.02453 1.21508 0.98972 0.95479 0.99448 1.21458 0.94663 0.98250 1.01044 1.21941 0.96636 0.96877 1.00968 1.88921 1.39340 1.77301 1.21581 0.95184 0.95944 0.91352 0.97190 0.89095 0.93167 0.84769 0.95897 0.90811 0.90723 0.90517 0.90916 0.90867 0.91569 0.91491 0.92568 0.90829 0.92705 0.92278 0.92571 0.90646 0.91837 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 9.40 37.15 0.35 -2.54 16 2 C -0.14 -3.48 5.51 -26.73 -0.15 -3.63 16 3 C 0.21 5.43 2.33 -68.87 -0.16 5.27 16 4 H 0.03 0.82 7.70 -51.93 -0.40 0.42 16 5 C -0.49 -13.37 7.25 -34.44 -0.25 -13.62 16 6 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 7 C 0.06 1.56 5.28 -17.81 -0.09 1.46 16 8 N -0.90 -25.65 11.38 55.43 0.63 -25.02 16 9 Si 0.89 21.64 29.54 -169.99 -5.02 16.61 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.68 -14.92 6.21 -107.96 -0.67 -15.59 16 14 C 0.07 1.26 5.27 -3.82 -0.02 1.24 16 15 C 0.08 1.25 3.53 -25.67 -0.09 1.16 16 16 H 0.07 1.17 8.12 -51.93 -0.42 0.74 16 17 C -0.15 -1.82 6.59 -24.69 -0.16 -1.98 16 18 C -0.15 -1.54 6.27 -25.28 -0.16 -1.70 16 19 C 0.11 1.28 0.71 -90.39 -0.06 1.21 16 20 C -0.11 -1.16 4.72 -26.83 -0.13 -1.29 16 21 C -0.12 -1.31 5.80 -26.71 -0.15 -1.47 16 22 C -0.12 -1.21 5.91 -26.73 -0.16 -1.37 16 23 C -0.12 -1.35 5.80 -26.70 -0.15 -1.50 16 24 C -0.13 -1.42 4.65 -26.82 -0.12 -1.54 16 25 O -0.35 -5.43 9.13 -35.23 -0.32 -5.75 16 26 H 0.03 0.62 6.63 -51.93 -0.34 0.27 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 1.66 6.85 -51.93 -0.36 1.31 16 29 H 0.01 0.22 7.50 -51.93 -0.39 -0.17 16 30 H 0.09 2.45 6.23 -51.93 -0.32 2.13 16 31 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 32 H 0.33 7.30 6.44 -39.29 -0.25 7.04 16 33 H 0.02 0.43 7.54 -51.93 -0.39 0.04 16 34 H 0.07 1.36 7.92 -51.93 -0.41 0.95 16 35 H 0.07 0.91 8.06 -51.93 -0.42 0.49 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.68 7.68 -51.93 -0.40 0.28 16 38 H 0.07 0.69 7.69 -51.93 -0.40 0.29 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.99 7.76 -51.93 -0.40 0.58 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.07 1.05 7.76 -51.93 -0.40 0.65 16 47 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.06 0.77 8.11 -51.93 -0.42 0.35 16 LS Contribution 357.99 15.07 5.39 5.39 Total: -1.00 -28.12 357.99 -10.59 -38.71 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -9.08 Total: 5.93 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: -1.52 Total: -20.28 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: -0.04 Total: -40.62 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: -0.32 Total: -5.75 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.12 -10.59 -38.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563365764.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.873 kcal (2) G-P(sol) polarization free energy of solvation -28.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds