Wall clock time and date at job start Tue Mar 31 2020 06:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46972 * 2 1 4 4 H 1.08997 * 109.47321 * 305.00170 * 3 2 1 5 5 C 1.53005 * 109.47211 * 64.99908 * 3 2 1 6 6 C 1.53002 * 109.47002 * 184.99817 * 3 2 1 7 7 H 1.09001 * 109.47018 * 299.99995 * 6 3 2 8 8 C 1.52996 * 109.46997 * 59.99893 * 6 3 2 9 9 C 1.50705 * 109.47016 * 180.02562 * 6 3 2 10 10 O 1.21283 * 119.99790 * 325.50438 * 9 6 3 11 11 N 1.34777 * 119.99597 * 145.78178 * 9 6 3 12 12 C 1.46924 * 120.63248 * 5.03210 * 11 9 6 13 13 C 1.52758 * 109.00766 * 233.58005 * 12 11 9 14 14 C 1.53041 * 109.38549 * 305.59050 * 13 12 11 15 15 C 1.53002 * 109.44955 * 181.25132 * 14 13 12 16 16 C 1.50702 * 109.47032 * 64.94153 * 15 14 13 17 17 H 1.08002 * 119.99551 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00150 * 179.97438 * 16 15 14 19 19 N 1.31522 * 119.99736 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00089 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46939 * 90.00099 * 20 18 16 22 22 H 1.48504 * 109.46750 * 209.99932 * 20 18 16 23 23 H 1.48492 * 109.47116 * 329.99898 * 20 18 16 24 24 C 1.53042 * 109.53673 * 61.23943 * 14 13 12 25 25 C 1.46924 * 120.62594 * 185.31102 * 11 9 6 26 26 H 1.09001 * 109.47195 * 299.99581 * 1 2 3 27 27 H 1.08992 * 109.47109 * 60.00126 * 1 2 3 28 28 H 1.09004 * 109.47067 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47344 * 239.99750 * 2 1 3 30 30 H 1.09006 * 109.46880 * 119.99847 * 2 1 3 31 31 H 1.08997 * 109.46764 * 59.99921 * 5 3 2 32 32 H 1.08997 * 109.47123 * 179.97438 * 5 3 2 33 33 H 1.08990 * 109.47039 * 300.00091 * 5 3 2 34 34 H 1.08997 * 109.47335 * 304.80268 * 8 6 3 35 35 H 1.09008 * 109.47280 * 64.80558 * 8 6 3 36 36 H 1.08998 * 109.46962 * 184.80329 * 8 6 3 37 37 H 1.08990 * 109.58625 * 353.42003 * 12 11 9 38 38 H 1.09005 * 109.58304 * 113.84125 * 12 11 9 39 39 H 1.09002 * 109.56665 * 185.55519 * 13 12 11 40 40 H 1.09005 * 109.35897 * 65.49976 * 13 12 11 41 41 H 1.09001 * 109.46257 * 301.22102 * 14 13 12 42 42 H 1.09004 * 109.46971 * 184.93793 * 15 14 13 43 43 H 1.09001 * 109.47092 * 304.93785 * 15 14 13 44 44 H 0.96992 * 119.99748 * 179.97438 * 19 18 16 45 45 H 1.09007 * 109.49871 * 178.68278 * 24 14 13 46 46 H 1.08994 * 109.49767 * 58.58662 * 24 14 13 47 47 H 1.09008 * 109.58537 * 246.15874 * 25 11 9 48 48 H 1.09000 * 109.58880 * 6.43672 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6351 2.1265 1.3074 6 6 3.5648 1.4443 -0.1257 7 1 3.9994 0.9053 0.7162 8 6 3.9696 0.7602 -1.4330 9 6 4.0672 2.8651 -0.1250 10 8 3.4074 3.7418 -0.6418 11 7 5.2522 3.1606 0.4449 12 6 6.1160 2.0951 0.9715 13 6 6.4659 2.4108 2.4246 14 6 7.0746 3.8125 2.5074 15 6 7.4543 4.1181 3.9578 16 6 8.5482 3.1800 4.3989 17 1 8.9336 2.4397 3.7135 18 6 9.0568 3.2669 5.6775 19 7 8.5877 4.1689 6.5119 20 14 10.4122 2.1037 6.2246 21 1 11.7347 2.7086 5.9242 22 1 10.2982 1.8632 7.6856 23 1 10.2810 0.8148 5.4990 24 6 6.0541 4.8433 2.0196 25 6 5.7021 4.5548 0.5569 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.0698 1.5875 2.1491 32 1 1.9988 3.1540 1.3076 33 1 0.5489 2.1252 1.3969 34 1 3.5343 -0.2384 -1.4704 35 1 3.6069 1.3466 -2.2773 36 1 5.0558 0.6852 -1.4826 37 1 5.5908 1.1413 0.9224 38 1 7.0310 2.0415 0.3815 39 1 7.1848 1.6796 2.7941 40 1 5.5610 2.3707 3.0310 41 1 7.9656 3.8591 1.8812 42 1 7.8062 5.1471 4.0321 43 1 6.5818 3.9853 4.5975 44 1 8.9453 4.2298 7.4114 45 1 6.4798 5.8435 2.1009 46 1 5.1531 4.7803 2.6298 47 1 6.5827 4.7059 -0.0676 48 1 4.9048 5.2232 0.2319 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566274543.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:37 Heat of formation + Delta-G solvation = -77.850712 kcal Electronic energy + Delta-G solvation = -23336.892205 eV Core-core repulsion = 20197.108141 eV Total energy + Delta-G solvation = -3139.784064 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.38198 -37.83930 -36.52137 -34.01911 -32.55471 -31.83926 -30.61182 -29.42221 -28.05045 -25.13700 -24.57360 -23.70542 -22.80020 -21.61373 -20.34706 -19.35324 -18.47842 -17.10175 -16.30594 -15.81114 -15.28056 -15.02759 -14.55862 -14.44351 -14.07364 -13.74334 -13.58139 -13.39357 -13.13993 -12.94434 -12.74844 -12.42598 -12.23311 -12.03420 -11.95074 -11.78950 -11.76159 -11.31562 -11.19784 -10.99937 -10.88289 -10.76040 -10.67908 -10.60257 -10.53657 -10.42517 -10.11058 -9.71709 -9.42135 -9.23595 -8.98552 -8.37529 -8.31279 -6.01721 -4.03908 2.79099 3.18993 3.29313 3.36245 3.38038 4.43339 4.46898 4.54236 4.72865 4.93442 4.99230 5.09691 5.23242 5.33240 5.34291 5.42124 5.44391 5.45897 5.49329 5.51336 5.56910 5.67676 5.69597 5.73320 5.78465 5.84368 5.87025 5.92733 5.99257 6.04561 6.08186 6.09963 6.32109 6.33468 6.38051 6.40288 6.51787 6.70051 6.95682 6.98415 7.09543 7.62698 7.65263 7.79852 7.97993 8.35811 8.40204 9.02631 9.59985 11.09542 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.021882 B = 0.003784 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.293816 B = 7396.977757 C = 7804.952208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.074 4.074 4 H 0.080 0.920 5 C -0.152 4.152 6 C -0.111 4.111 7 H 0.094 0.906 8 C -0.143 4.143 9 C 0.522 3.478 10 O -0.552 6.552 11 N -0.605 5.605 12 C 0.101 3.899 13 C -0.120 4.120 14 C -0.080 4.080 15 C 0.028 3.972 16 C -0.516 4.516 17 H 0.056 0.944 18 C 0.056 3.944 19 N -0.895 5.895 20 Si 0.889 3.111 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.129 4.129 25 C 0.112 3.888 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.015 0.985 43 H 0.015 0.985 44 H 0.260 0.740 45 H 0.070 0.930 46 H 0.060 0.940 47 H 0.062 0.938 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.369 -7.788 -13.756 19.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.092 4.092 4 H 0.098 0.902 5 C -0.209 4.209 6 C -0.132 4.132 7 H 0.112 0.888 8 C -0.200 4.200 9 C 0.310 3.690 10 O -0.430 6.430 11 N -0.338 5.338 12 C -0.022 4.022 13 C -0.158 4.158 14 C -0.099 4.099 15 C -0.009 4.009 16 C -0.555 4.555 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.535 5.535 20 Si 0.717 3.283 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.167 4.167 25 C -0.010 4.010 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.103 0.897 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.034 0.966 43 H 0.033 0.967 44 H 0.070 0.930 45 H 0.088 0.912 46 H 0.078 0.922 47 H 0.080 0.920 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.687 -7.251 -13.847 19.517 hybrid contribution 0.967 -0.571 0.611 1.278 sum -10.720 -7.823 -13.236 18.743 Atomic orbital electron populations 1.21809 0.95848 1.01341 1.02025 1.21667 0.95985 0.96137 1.02154 1.21004 0.92490 0.96248 0.99507 0.90171 1.21912 1.01336 1.01072 0.96578 1.21451 0.97412 0.93746 1.00617 0.88827 1.21793 1.01600 1.00756 0.95888 1.20544 0.80272 0.90818 0.77347 1.90640 1.57074 1.49604 1.45730 1.48202 1.19066 1.08108 1.58387 1.21919 0.93947 0.89792 0.96527 1.21835 1.01358 0.99427 0.93187 1.21183 0.95741 0.92389 1.00563 1.19124 0.96279 0.96819 0.88716 1.21234 1.19435 1.17396 0.97405 0.92609 1.25026 0.96902 0.95632 0.96915 1.69966 1.42652 1.34427 1.06410 0.86645 0.82472 0.81360 0.77819 1.20745 1.21303 1.19896 1.22022 1.00204 1.00248 0.94232 1.21646 0.99674 0.82008 0.97705 0.92430 0.92806 0.92950 0.91574 0.91869 0.92759 0.92265 0.92375 0.91097 0.92012 0.92242 0.90195 0.91574 0.89695 0.92314 0.92383 0.96623 0.96651 0.93041 0.91189 0.92151 0.92005 0.89840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.67 37.16 0.36 -0.86 16 2 C -0.12 -1.04 5.19 -26.73 -0.14 -1.18 16 3 C -0.07 -0.80 1.65 -90.62 -0.15 -0.95 16 4 H 0.08 0.97 7.86 -51.93 -0.41 0.57 16 5 C -0.15 -1.78 8.69 37.16 0.32 -1.46 16 6 C -0.11 -1.26 1.61 -91.77 -0.15 -1.41 16 7 H 0.09 1.00 5.95 -51.93 -0.31 0.69 16 8 C -0.14 -1.35 8.96 37.16 0.33 -1.02 16 9 C 0.52 7.70 5.67 -10.98 -0.06 7.63 16 10 O -0.55 -9.81 15.12 5.55 0.08 -9.72 16 11 N -0.61 -8.89 2.98 -173.03 -0.52 -9.41 16 12 C 0.10 1.36 6.28 -3.93 -0.02 1.33 16 13 C -0.12 -2.03 5.17 -26.83 -0.14 -2.17 16 14 C -0.08 -1.53 2.10 -90.58 -0.19 -1.72 16 15 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 16 C -0.52 -13.87 8.39 -34.44 -0.29 -14.16 16 17 H 0.06 1.44 7.05 -52.49 -0.37 1.07 16 18 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 19 N -0.90 -26.45 13.29 55.43 0.74 -25.72 16 20 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 24 C -0.13 -2.18 5.36 -26.61 -0.14 -2.32 16 25 C 0.11 1.71 6.42 -3.71 -0.02 1.68 16 26 H 0.06 0.47 6.57 -51.93 -0.34 0.13 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.51 6.08 -51.93 -0.32 0.19 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.84 6.80 -51.93 -0.35 0.48 16 33 H 0.06 0.60 6.56 -51.93 -0.34 0.26 16 34 H 0.07 0.54 6.08 -51.93 -0.32 0.22 16 35 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.90 5.34 -51.93 -0.28 0.62 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.08 1.52 6.91 -51.93 -0.36 1.16 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 46 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 48 H 0.08 1.32 7.04 -51.93 -0.37 0.95 16 LS Contribution 361.86 15.07 5.45 5.45 Total: -1.00 -30.43 361.86 -8.59 -39.01 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -8.81 Total: -1.13 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: -0.51 Total: -14.56 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.22 Total: -35.12 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.08 Total: -9.72 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.43 -8.59 -39.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566274543.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.837 kcal (2) G-P(sol) polarization free energy of solvation -30.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds