Wall clock time and date at job start Tue Mar 31 2020 06:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.46622 * 2 1 4 4 H 1.08999 * 109.47082 * 55.00894 * 3 2 1 5 5 C 1.53000 * 109.47447 * 295.00160 * 3 2 1 6 6 C 1.53008 * 109.46536 * 175.00115 * 3 2 1 7 7 H 1.08999 * 109.46798 * 60.00606 * 6 3 2 8 8 C 1.52991 * 109.47367 * 300.00323 * 6 3 2 9 9 C 1.50701 * 109.46572 * 180.02562 * 6 3 2 10 10 O 1.21269 * 120.00409 * 27.44104 * 9 6 3 11 11 N 1.34776 * 119.99714 * 207.16467 * 9 6 3 12 12 C 1.46925 * 120.63440 * 175.15750 * 11 9 6 13 13 C 1.52756 * 109.00997 * 233.58556 * 12 11 9 14 14 C 1.53041 * 109.38630 * 305.58440 * 13 12 11 15 15 C 1.52994 * 109.46318 * 181.25972 * 14 13 12 16 16 C 1.50705 * 109.47052 * 64.93055 * 15 14 13 17 17 H 1.08005 * 119.99745 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00116 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99892 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99966 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.46967 * 90.00383 * 20 18 16 22 22 H 1.48500 * 109.46722 * 210.00334 * 20 18 16 23 23 H 1.48502 * 109.47113 * 330.00238 * 20 18 16 24 24 C 1.53043 * 109.53478 * 61.23990 * 14 13 12 25 25 C 1.46936 * 120.63027 * 355.43923 * 11 9 6 26 26 H 1.09002 * 109.47263 * 59.99359 * 1 2 3 27 27 H 1.08999 * 109.47100 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46821 * 299.99380 * 1 2 3 29 29 H 1.09000 * 109.46821 * 240.00620 * 2 1 3 30 30 H 1.08989 * 109.47395 * 120.00432 * 2 1 3 31 31 H 1.08996 * 109.47060 * 60.00360 * 5 3 2 32 32 H 1.08999 * 109.46989 * 180.02562 * 5 3 2 33 33 H 1.08992 * 109.47238 * 300.00405 * 5 3 2 34 34 H 1.09002 * 109.47456 * 306.28494 * 8 6 3 35 35 H 1.08997 * 109.47202 * 66.28377 * 8 6 3 36 36 H 1.08998 * 109.47412 * 186.28598 * 8 6 3 37 37 H 1.09004 * 109.57972 * 353.41983 * 12 11 9 38 38 H 1.08997 * 109.58850 * 113.83847 * 12 11 9 39 39 H 1.09006 * 109.56526 * 185.54585 * 13 12 11 40 40 H 1.09001 * 109.36042 * 65.50040 * 13 12 11 41 41 H 1.08999 * 109.45763 * 301.22115 * 14 13 12 42 42 H 1.08999 * 109.47235 * 184.92860 * 15 14 13 43 43 H 1.09000 * 109.47363 * 304.93565 * 15 14 13 44 44 H 0.97003 * 120.00067 * 180.02562 * 19 18 16 45 45 H 1.09000 * 109.49178 * 178.68429 * 24 14 13 46 46 H 1.08996 * 109.52421 * 58.60319 * 24 14 13 47 47 H 1.09002 * 109.58468 * 246.15672 * 25 11 9 48 48 H 1.08997 * 109.58551 * 6.43875 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6351 2.1267 -1.3073 6 6 3.5649 1.4444 0.1257 7 1 3.9994 0.9054 -0.7162 8 6 3.9697 0.7603 1.4329 9 6 4.0670 2.8653 0.1263 10 8 3.3539 3.7603 0.5276 11 7 5.3108 3.1406 -0.3139 12 6 5.7773 4.5298 -0.4192 13 6 6.2961 4.7746 -1.8349 14 6 7.3588 3.7270 -2.1747 15 6 7.9021 3.9895 -3.5806 16 6 8.6233 5.3126 -3.6015 17 1 8.6880 5.9066 -2.7018 18 6 9.2015 5.7643 -4.7689 19 7 9.1231 5.0408 -5.8643 20 14 10.0961 7.4040 -4.7945 21 1 11.5272 7.1923 -4.4600 22 1 9.9877 8.0057 -6.1478 23 1 9.4842 8.3174 -3.7962 24 6 6.7357 2.3301 -2.1215 25 6 6.2238 2.0573 -0.7037 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 1.8934 -0.5137 -0.8901 30 1 1.8934 -0.5138 0.8898 31 1 0.5489 2.1253 -1.3968 32 1 1.9988 3.1542 -1.3074 33 1 2.0697 1.5877 -2.1491 34 1 3.4467 1.2300 2.2660 35 1 3.7052 -0.2961 1.3872 36 1 5.0455 0.8596 1.5770 37 1 4.9507 5.2094 -0.2117 38 1 6.5816 4.7004 0.2964 39 1 6.7346 5.7707 -1.8959 40 1 5.4695 4.6967 -2.5412 41 1 8.1735 3.7890 -1.4533 42 1 8.5942 3.1941 -3.8571 43 1 7.0756 4.0151 -4.2907 44 1 9.5302 5.3583 -6.6855 45 1 7.4872 1.5864 -2.3864 46 1 5.9051 2.2747 -2.8251 47 1 7.0654 2.0221 -0.0118 48 1 5.6925 1.1059 -0.6815 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566274548.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:43 Heat of formation + Delta-G solvation = -79.100405 kcal Electronic energy + Delta-G solvation = -23266.434812 eV Core-core repulsion = 20126.596557 eV Total energy + Delta-G solvation = -3139.838255 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.39109 -37.84858 -36.50202 -34.05768 -32.52810 -31.87177 -30.59977 -29.40865 -28.06141 -24.99819 -24.58524 -23.96466 -22.60027 -21.66175 -20.37210 -19.34711 -18.51690 -17.07731 -16.28887 -15.83087 -15.24364 -15.04527 -14.55004 -14.44638 -14.09036 -13.78218 -13.60198 -13.33254 -13.12143 -12.94527 -12.80910 -12.39356 -12.18469 -12.06886 -11.96324 -11.83823 -11.77688 -11.35483 -11.18201 -11.02900 -10.85093 -10.70875 -10.69793 -10.62028 -10.54862 -10.41706 -10.15249 -9.65416 -9.44324 -9.25382 -8.96596 -8.36527 -8.30740 -6.00882 -4.02647 2.79483 3.18905 3.30855 3.37667 3.40526 4.44545 4.45845 4.51679 4.71641 4.92156 4.97949 5.06879 5.18118 5.32156 5.34636 5.36407 5.41435 5.44573 5.47717 5.54150 5.59575 5.63262 5.69283 5.71744 5.81749 5.84023 5.86255 5.90881 5.98551 6.03307 6.05671 6.10434 6.31712 6.33915 6.35374 6.39839 6.53764 6.68248 6.98508 7.01627 7.11351 7.62614 7.65463 7.80041 7.98683 8.36311 8.41514 9.03730 9.61306 11.10401 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.030642 B = 0.003423 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.570887 B = 8177.077564 C = 8279.899519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.073 4.073 4 H 0.080 0.920 5 C -0.153 4.153 6 C -0.110 4.110 7 H 0.093 0.907 8 C -0.142 4.142 9 C 0.520 3.480 10 O -0.549 6.549 11 N -0.605 5.605 12 C 0.109 3.891 13 C -0.118 4.118 14 C -0.080 4.080 15 C 0.028 3.972 16 C -0.516 4.516 17 H 0.056 0.944 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.889 3.111 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.131 4.131 25 C 0.104 3.896 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.061 0.939 39 H 0.084 0.916 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.015 0.985 43 H 0.015 0.985 44 H 0.260 0.740 45 H 0.070 0.930 46 H 0.061 0.939 47 H 0.066 0.934 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.131 -11.446 12.442 20.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.092 4.092 4 H 0.098 0.902 5 C -0.210 4.210 6 C -0.131 4.131 7 H 0.111 0.889 8 C -0.200 4.200 9 C 0.308 3.692 10 O -0.427 6.427 11 N -0.338 5.338 12 C -0.013 4.013 13 C -0.156 4.156 14 C -0.099 4.099 15 C -0.009 4.009 16 C -0.554 4.554 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.535 5.535 20 Si 0.717 3.283 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.169 4.169 25 C -0.018 4.018 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.079 0.921 39 H 0.102 0.898 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.034 0.966 43 H 0.033 0.967 44 H 0.069 0.931 45 H 0.089 0.911 46 H 0.080 0.920 47 H 0.085 0.915 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.450 -10.957 12.470 20.750 hybrid contribution 0.745 0.886 -0.310 1.198 sum -11.706 -10.071 12.160 19.655 Atomic orbital electron populations 1.21812 0.95863 1.01315 1.02049 1.21645 0.95987 0.96170 1.02055 1.21005 0.92460 0.96113 0.99599 0.90185 1.21923 1.01283 1.01361 0.96401 1.21428 0.97442 0.93761 1.00452 0.88928 1.21781 1.01670 1.00605 0.95913 1.20544 0.80893 0.90978 0.76735 1.90641 1.56228 1.48344 1.47513 1.48200 1.13415 1.07999 1.64192 1.21667 0.99343 0.81789 0.98501 1.21817 0.98701 1.01230 0.93839 1.21184 0.96008 0.91420 1.01280 1.19119 0.95697 0.96582 0.89492 1.21243 1.34096 1.04551 0.95549 0.92605 1.25017 0.96453 0.97206 0.95780 1.69960 1.45175 1.37918 1.00480 0.86644 0.80125 0.84259 0.77287 1.20741 1.21296 1.19870 1.22038 1.00665 0.99520 0.94693 1.21889 0.93076 0.89543 0.97327 0.92430 0.92971 0.92795 0.91962 0.91678 0.92449 0.91908 0.92981 0.91958 0.91282 0.92218 0.89827 0.92071 0.89796 0.92469 0.92379 0.96642 0.96659 0.93057 0.91104 0.92011 0.91541 0.90249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.67 37.16 0.36 -0.82 16 2 C -0.12 -1.00 5.19 -26.73 -0.14 -1.14 16 3 C -0.07 -0.77 1.62 -90.61 -0.15 -0.92 16 4 H 0.08 0.96 7.86 -51.93 -0.41 0.55 16 5 C -0.15 -1.77 8.67 37.16 0.32 -1.45 16 6 C -0.11 -1.20 1.46 -91.77 -0.13 -1.33 16 7 H 0.09 0.93 6.34 -51.93 -0.33 0.61 16 8 C -0.14 -1.28 8.47 37.15 0.31 -0.96 16 9 C 0.52 7.63 5.91 -10.99 -0.06 7.57 16 10 O -0.55 -9.81 14.62 5.57 0.08 -9.73 16 11 N -0.61 -8.86 2.98 -173.03 -0.52 -9.38 16 12 C 0.11 1.74 6.39 -3.94 -0.03 1.72 16 13 C -0.12 -2.16 5.17 -26.84 -0.14 -2.30 16 14 C -0.08 -1.54 2.10 -90.58 -0.19 -1.73 16 15 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 16 C -0.52 -14.06 8.39 -34.44 -0.29 -14.35 16 17 H 0.06 1.47 7.06 -52.48 -0.37 1.10 16 18 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 20 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 24 C -0.13 -2.03 5.36 -26.61 -0.14 -2.17 16 25 C 0.10 1.32 6.00 -3.71 -0.02 1.30 16 26 H 0.06 0.46 6.56 -51.93 -0.34 0.11 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.48 6.32 -51.94 -0.33 0.15 16 31 H 0.06 0.59 6.56 -51.93 -0.34 0.25 16 32 H 0.06 0.90 6.55 -51.93 -0.34 0.56 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.49 6.67 -51.93 -0.35 0.14 16 36 H 0.06 0.53 7.75 -51.93 -0.40 0.12 16 37 H 0.08 1.40 7.04 -51.93 -0.37 1.03 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.08 1.65 6.91 -51.93 -0.36 1.29 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 45 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 46 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 47 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.08 0.81 5.26 -51.93 -0.27 0.54 16 LS Contribution 361.08 15.07 5.44 5.44 Total: -1.00 -30.71 361.08 -8.63 -39.34 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -8.83 Total: -1.71 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -0.52 Total: -14.52 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 0.22 Total: -35.23 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.08 Total: -9.73 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.71 -8.63 -39.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566274548.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.762 kcal (2) G-P(sol) polarization free energy of solvation -30.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds