Wall clock time and date at job start Tue Mar 31 2020 06:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.46622 * 2 1 4 4 H 1.08999 * 109.47082 * 55.00894 * 3 2 1 5 5 C 1.53000 * 109.47447 * 295.00160 * 3 2 1 6 6 C 1.53008 * 109.46536 * 175.00115 * 3 2 1 7 7 H 1.08999 * 109.46798 * 60.00606 * 6 3 2 8 8 C 1.52991 * 109.47367 * 300.00323 * 6 3 2 9 9 C 1.50701 * 109.46572 * 180.02562 * 6 3 2 10 10 O 1.21269 * 120.00409 * 27.44104 * 9 6 3 11 11 N 1.34776 * 119.99714 * 207.16467 * 9 6 3 12 12 C 1.46925 * 120.63440 * 175.15750 * 11 9 6 13 13 C 1.52756 * 109.00997 * 233.58556 * 12 11 9 14 14 C 1.53041 * 109.38630 * 305.58440 * 13 12 11 15 15 C 1.52994 * 109.46318 * 181.25972 * 14 13 12 16 16 C 1.50705 * 109.47052 * 64.93055 * 15 14 13 17 17 H 1.08005 * 119.99745 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00116 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99892 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99966 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.46967 * 90.00383 * 20 18 16 22 22 H 1.48500 * 109.46722 * 210.00334 * 20 18 16 23 23 H 1.48502 * 109.47113 * 330.00238 * 20 18 16 24 24 C 1.53043 * 109.53478 * 61.23990 * 14 13 12 25 25 C 1.46936 * 120.63027 * 355.43923 * 11 9 6 26 26 H 1.09002 * 109.47263 * 59.99359 * 1 2 3 27 27 H 1.08999 * 109.47100 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46821 * 299.99380 * 1 2 3 29 29 H 1.09000 * 109.46821 * 240.00620 * 2 1 3 30 30 H 1.08989 * 109.47395 * 120.00432 * 2 1 3 31 31 H 1.08996 * 109.47060 * 60.00360 * 5 3 2 32 32 H 1.08999 * 109.46989 * 180.02562 * 5 3 2 33 33 H 1.08992 * 109.47238 * 300.00405 * 5 3 2 34 34 H 1.09002 * 109.47456 * 306.28494 * 8 6 3 35 35 H 1.08997 * 109.47202 * 66.28377 * 8 6 3 36 36 H 1.08998 * 109.47412 * 186.28598 * 8 6 3 37 37 H 1.09004 * 109.57972 * 353.41983 * 12 11 9 38 38 H 1.08997 * 109.58850 * 113.83847 * 12 11 9 39 39 H 1.09006 * 109.56526 * 185.54585 * 13 12 11 40 40 H 1.09001 * 109.36042 * 65.50040 * 13 12 11 41 41 H 1.08999 * 109.45763 * 301.22115 * 14 13 12 42 42 H 1.08999 * 109.47235 * 184.92860 * 15 14 13 43 43 H 1.09000 * 109.47363 * 304.93565 * 15 14 13 44 44 H 0.97003 * 120.00067 * 180.02562 * 19 18 16 45 45 H 1.09000 * 109.49178 * 178.68429 * 24 14 13 46 46 H 1.08996 * 109.52421 * 58.60319 * 24 14 13 47 47 H 1.09002 * 109.58468 * 246.15672 * 25 11 9 48 48 H 1.08997 * 109.58551 * 6.43875 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6351 2.1267 -1.3073 6 6 3.5649 1.4444 0.1257 7 1 3.9994 0.9054 -0.7162 8 6 3.9697 0.7603 1.4329 9 6 4.0670 2.8653 0.1263 10 8 3.3539 3.7603 0.5276 11 7 5.3108 3.1406 -0.3139 12 6 5.7773 4.5298 -0.4192 13 6 6.2961 4.7746 -1.8349 14 6 7.3588 3.7270 -2.1747 15 6 7.9021 3.9895 -3.5806 16 6 8.6233 5.3126 -3.6015 17 1 8.6880 5.9066 -2.7018 18 6 9.2015 5.7643 -4.7689 19 7 9.1231 5.0408 -5.8643 20 14 10.0961 7.4040 -4.7945 21 1 11.5272 7.1923 -4.4600 22 1 9.9877 8.0057 -6.1478 23 1 9.4842 8.3174 -3.7962 24 6 6.7357 2.3301 -2.1215 25 6 6.2238 2.0573 -0.7037 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 1.8934 -0.5137 -0.8901 30 1 1.8934 -0.5138 0.8898 31 1 0.5489 2.1253 -1.3968 32 1 1.9988 3.1542 -1.3074 33 1 2.0697 1.5877 -2.1491 34 1 3.4467 1.2300 2.2660 35 1 3.7052 -0.2961 1.3872 36 1 5.0455 0.8596 1.5770 37 1 4.9507 5.2094 -0.2117 38 1 6.5816 4.7004 0.2964 39 1 6.7346 5.7707 -1.8959 40 1 5.4695 4.6967 -2.5412 41 1 8.1735 3.7890 -1.4533 42 1 8.5942 3.1941 -3.8571 43 1 7.0756 4.0151 -4.2907 44 1 9.5302 5.3583 -6.6855 45 1 7.4872 1.5864 -2.3864 46 1 5.9051 2.2747 -2.8251 47 1 7.0654 2.0221 -0.0118 48 1 5.6925 1.1059 -0.6815 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566274548.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:42 Heat of formation + Delta-G solvation = -95.267057 kcal Electronic energy + Delta-G solvation = -23267.135851 eV Core-core repulsion = 20126.596557 eV Total energy + Delta-G solvation = -3140.539294 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.52648 -39.08698 -37.52476 -35.72365 -34.09290 -33.06378 -31.80176 -30.21804 -29.79592 -26.54290 -25.38355 -25.16285 -23.89833 -23.12868 -21.49289 -20.56991 -19.68487 -18.44704 -18.14391 -16.96875 -16.54644 -16.29140 -15.89768 -15.41748 -15.27326 -15.05281 -14.75573 -14.56366 -14.40186 -14.07298 -13.99819 -13.87721 -13.36042 -13.25504 -13.00056 -12.82076 -12.76437 -12.70117 -12.57767 -12.47550 -12.32790 -12.14287 -12.07989 -11.80961 -11.57839 -11.42454 -11.31148 -11.29998 -11.05295 -10.92119 -10.54289 -10.46288 -9.57950 -8.17825 -6.26677 1.39423 1.40150 1.50692 1.66757 2.06646 2.41304 3.15814 3.49518 3.70707 3.87645 3.95908 4.02963 4.08260 4.17661 4.25646 4.34420 4.39014 4.41889 4.55984 4.60464 4.65175 4.70122 4.75882 4.78737 4.81120 4.88343 4.92146 4.98893 5.00696 5.08383 5.12694 5.14978 5.22734 5.27299 5.30699 5.32891 5.35678 5.38853 5.51966 5.55778 5.57588 5.63080 5.80797 5.89811 6.29255 6.50140 6.89942 7.21943 7.41798 8.93878 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.030642 B = 0.003423 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.570887 B = 8177.077564 C = 8279.899519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 C -0.070 4.070 4 H 0.062 0.938 5 C -0.151 4.151 6 C -0.105 4.105 7 H 0.109 0.891 8 C -0.139 4.139 9 C 0.515 3.485 10 O -0.587 6.587 11 N -0.609 5.609 12 C 0.118 3.882 13 C -0.109 4.109 14 C -0.073 4.073 15 C 0.034 3.966 16 C -0.529 4.529 17 H 0.061 0.939 18 C -0.001 4.001 19 N -0.935 5.935 20 Si 0.957 3.043 21 H -0.272 1.272 22 H -0.286 1.286 23 H -0.265 1.265 24 C -0.126 4.126 25 C 0.110 3.890 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.028 0.972 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.096 0.904 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.038 0.962 41 H 0.062 0.938 42 H -0.007 1.007 43 H -0.016 1.016 44 H 0.261 0.739 45 H 0.082 0.918 46 H 0.051 0.949 47 H 0.085 0.915 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.993 -13.093 14.062 22.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.152 4.152 3 C -0.089 4.089 4 H 0.080 0.920 5 C -0.208 4.208 6 C -0.126 4.126 7 H 0.127 0.873 8 C -0.196 4.196 9 C 0.305 3.695 10 O -0.468 6.468 11 N -0.341 5.341 12 C -0.005 4.005 13 C -0.147 4.147 14 C -0.092 4.092 15 C -0.003 4.003 16 C -0.567 4.567 17 H 0.079 0.921 18 C -0.199 4.199 19 N -0.576 5.576 20 Si 0.782 3.218 21 H -0.198 1.198 22 H -0.212 1.212 23 H -0.189 1.189 24 C -0.164 4.164 25 C -0.012 4.012 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.115 0.885 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.057 0.943 41 H 0.081 0.919 42 H 0.011 0.989 43 H 0.002 0.998 44 H 0.070 0.930 45 H 0.100 0.900 46 H 0.070 0.930 47 H 0.104 0.896 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.306 -12.621 14.103 22.575 hybrid contribution 0.670 1.418 -0.860 1.788 sum -11.636 -11.204 13.243 20.888 Atomic orbital electron populations 1.21825 0.95656 1.02073 1.01641 1.21615 0.96159 0.94227 1.03207 1.20985 0.92353 0.97555 0.98027 0.92000 1.21903 1.01873 0.99514 0.97516 1.21508 0.97492 0.91240 1.02358 0.87323 1.21805 1.01951 1.01788 0.94065 1.21302 0.80256 0.92326 0.75620 1.90624 1.57095 1.49907 1.49167 1.48312 1.13981 1.07712 1.64111 1.21434 0.99253 0.83030 0.96778 1.21658 0.97730 1.00084 0.95239 1.21033 0.96399 0.94148 0.97572 1.19010 0.93991 0.95054 0.92288 1.21681 1.33787 1.05537 0.95732 0.92071 1.25915 0.97472 1.00983 0.95490 1.70091 1.46429 1.39891 1.01140 0.85569 0.79088 0.79788 0.77371 1.19772 1.21169 1.18895 1.21953 1.00437 0.97159 0.96835 1.22015 0.93702 0.90151 0.95321 0.93009 0.91607 0.93131 0.91079 0.90132 0.91588 0.95284 0.92348 0.92894 0.88550 0.91587 0.90955 0.90619 0.91655 0.94311 0.91943 0.98868 0.99789 0.92995 0.89954 0.93020 0.89638 0.86824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.67 71.98 0.70 -1.36 16 2 C -0.11 -1.55 5.19 30.60 0.16 -1.39 16 3 C -0.07 -1.38 1.62 -10.79 -0.02 -1.40 16 4 H 0.06 1.45 7.86 -2.39 -0.02 1.43 16 5 C -0.15 -3.44 8.67 71.98 0.62 -2.81 16 6 C -0.11 -2.04 1.46 -11.54 -0.02 -2.06 16 7 H 0.11 1.78 6.34 -2.39 -0.02 1.76 16 8 C -0.14 -2.00 8.47 71.98 0.61 -1.39 16 9 C 0.51 14.55 5.91 87.66 0.52 15.07 16 10 O -0.59 -21.17 14.62 -3.00 -0.04 -21.22 16 11 N -0.61 -16.92 2.98 -819.74 -2.44 -19.37 16 12 C 0.12 3.72 6.39 86.22 0.55 4.28 16 13 C -0.11 -4.07 5.17 30.53 0.16 -3.91 16 14 C -0.07 -2.79 2.10 -10.77 -0.02 -2.82 16 15 C 0.03 1.71 4.45 29.85 0.13 1.85 16 16 C -0.53 -29.35 8.39 25.60 0.21 -29.14 16 17 H 0.06 3.25 7.06 -2.91 -0.02 3.23 16 18 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 19 N -0.93 -56.75 13.29 21.45 0.28 -56.47 16 20 Si 0.96 44.28 29.54 68.60 2.03 46.30 16 21 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 22 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 23 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 24 C -0.13 -3.72 5.36 30.67 0.16 -3.56 16 25 C 0.11 2.45 6.00 86.36 0.52 2.97 16 26 H 0.05 0.74 6.56 -2.39 -0.02 0.72 16 27 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.08 0.87 6.32 -2.39 -0.02 0.85 16 31 H 0.07 1.34 6.56 -2.39 -0.02 1.33 16 32 H 0.03 0.84 6.55 -2.39 -0.02 0.83 16 33 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.10 0.89 6.67 -2.39 -0.02 0.88 16 36 H 0.07 0.89 7.75 -2.39 -0.02 0.88 16 37 H 0.07 2.46 7.04 -2.39 -0.02 2.45 16 38 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.06 2.65 6.91 -2.38 -0.02 2.63 16 40 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 42 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 43 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 44 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 45 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 46 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.09 1.67 8.14 -2.39 -0.02 1.66 16 48 H 0.11 1.81 5.26 -2.39 -0.01 1.80 16 Total: -1.00 -68.90 361.08 5.48 -63.42 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 0.90 Total: 12.61 kcal Atomic # 6 Polarization: -30.04 SS G_CDS: 4.75 Total: -25.29 kcal Atomic # 7 Polarization: -73.68 SS G_CDS: -2.16 Total: -75.84 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.04 Total: -21.22 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -68.90 5.48 -63.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566274548.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.842 kcal (2) G-P(sol) polarization free energy of solvation -68.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds