Wall clock time and date at job start Tue Mar 31 2020 05:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47203 * 2 1 4 4 H 1.08992 * 109.47514 * 305.00424 * 3 2 1 5 5 C 1.53002 * 109.46637 * 65.00295 * 3 2 1 6 6 C 1.52997 * 109.46817 * 179.97438 * 5 3 2 7 7 C 1.53005 * 109.47452 * 300.00239 * 6 5 3 8 8 C 1.52999 * 109.47159 * 59.99536 * 7 6 5 9 9 H 1.08996 * 109.46929 * 179.97438 * 8 7 6 10 10 N 1.46506 * 109.46684 * 60.00602 * 8 7 6 11 11 C 1.34773 * 120.00361 * 84.99594 * 10 8 7 12 12 O 1.21281 * 119.99841 * 0.02562 * 11 10 8 13 13 C 1.50696 * 120.00220 * 179.97438 * 11 10 8 14 14 C 1.52998 * 109.47121 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.47016 * 179.97438 * 14 13 11 16 16 C 1.53007 * 109.46894 * 180.02562 * 15 14 13 17 17 C 1.50696 * 109.47028 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00120 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00072 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99886 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 119.99810 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47010 * 90.00744 * 21 19 17 23 23 H 1.48499 * 109.46964 * 209.99840 * 21 19 17 24 24 H 1.48494 * 109.47660 * 330.00608 * 21 19 17 25 25 C 1.52997 * 109.47317 * 300.00546 * 8 7 6 26 26 H 1.09005 * 109.47243 * 300.00091 * 1 2 3 27 27 H 1.09000 * 109.47476 * 59.99602 * 1 2 3 28 28 H 1.08996 * 109.47654 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46970 * 240.00359 * 2 1 3 30 30 H 1.09000 * 109.47017 * 120.00667 * 2 1 3 31 31 H 1.08993 * 109.47662 * 299.99908 * 5 3 2 32 32 H 1.09002 * 109.47075 * 60.00414 * 5 3 2 33 33 H 1.09002 * 109.47153 * 60.00231 * 6 5 3 34 34 H 1.09001 * 109.47289 * 180.02562 * 6 5 3 35 35 H 1.09000 * 109.47360 * 180.02562 * 7 6 5 36 36 H 1.09002 * 109.46935 * 300.00125 * 7 6 5 37 37 H 0.97004 * 119.99411 * 265.00023 * 10 8 7 38 38 H 1.09001 * 109.47165 * 300.00278 * 13 11 10 39 39 H 1.08994 * 109.47084 * 60.00351 * 13 11 10 40 40 H 1.09001 * 109.47093 * 300.00035 * 14 13 11 41 41 H 1.09007 * 109.47327 * 60.00215 * 14 13 11 42 42 H 1.08993 * 109.47417 * 300.00220 * 15 14 13 43 43 H 1.09002 * 109.46965 * 60.00432 * 15 14 13 44 44 H 1.09001 * 109.47129 * 300.00024 * 16 15 14 45 45 H 1.08994 * 109.47176 * 60.00131 * 16 15 14 46 46 H 0.97006 * 119.99978 * 179.97438 * 20 19 17 47 47 H 1.09002 * 109.47153 * 299.99641 * 25 8 7 48 48 H 1.09001 * 109.46832 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 1.6352 2.1264 1.3074 6 6 2.1457 3.5687 1.3078 7 6 3.6706 3.5701 1.1822 8 6 4.0754 2.8860 -0.1251 9 1 5.1616 2.8874 -0.2147 10 7 3.4916 3.6110 -1.2565 11 6 4.1274 4.6823 -1.7708 12 8 5.1830 5.0460 -1.2972 13 6 3.5272 5.4276 -2.9349 14 6 4.4419 6.5916 -3.3214 15 6 3.8329 7.3479 -4.5038 16 6 4.7479 8.5116 -4.8908 17 6 4.1478 9.2569 -6.0549 18 1 3.2079 8.9329 -6.4769 19 6 4.7990 10.3519 -6.5820 20 7 4.2750 11.0027 -7.5976 21 14 6.4249 10.9120 -5.8525 22 1 7.5424 10.2244 -6.5480 23 1 6.5644 12.3805 -6.0235 24 1 6.4606 10.5764 -4.4065 25 6 3.5648 1.4437 -0.1255 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 0.5490 2.1251 1.3971 32 1 2.0699 1.5874 2.1492 33 1 1.7114 4.1081 0.4660 34 1 1.8578 4.0559 2.2394 35 1 4.0344 4.5976 1.1829 36 1 4.1050 3.0307 2.0240 37 1 2.6474 3.3199 -1.6355 38 1 3.4216 4.7517 -3.7835 39 1 2.5474 5.8131 -2.6533 40 1 4.5480 7.2676 -2.4730 41 1 5.4217 6.2057 -3.6033 42 1 3.7271 6.6718 -5.3521 43 1 2.8530 7.7338 -4.2224 44 1 4.8540 9.1879 -4.0426 45 1 5.7275 8.1254 -5.1723 46 1 4.7330 11.7733 -7.9682 47 1 3.9991 0.9044 0.7163 48 1 3.8528 0.9566 -1.0571 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588158727.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:04 Heat of formation + Delta-G solvation = -94.964879 kcal Electronic energy + Delta-G solvation = -22141.306400 eV Core-core repulsion = 19000.780210 eV Total energy + Delta-G solvation = -3140.526190 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.45983 -38.62631 -35.20537 -34.75363 -33.09811 -32.51927 -30.77315 -29.89742 -28.99844 -25.89349 -24.21491 -22.87954 -22.27995 -21.10668 -20.49157 -19.99122 -19.26908 -16.97427 -16.57217 -16.14876 -15.79734 -15.61238 -15.18916 -14.58200 -14.22337 -14.06443 -13.89169 -13.68033 -13.48488 -13.05680 -12.62957 -12.62518 -12.45614 -12.30961 -12.03991 -11.94943 -11.76571 -11.71868 -11.45303 -11.22468 -11.08106 -10.85416 -10.70437 -10.50897 -10.46863 -10.28819 -9.91426 -9.77784 -9.61963 -9.37225 -9.10576 -9.09427 -8.47492 -5.98765 -3.96038 2.74350 3.16064 3.36888 3.43774 3.50187 4.23201 4.29227 4.35275 4.51909 4.71942 4.74979 4.82590 4.95263 4.98428 5.07161 5.08863 5.24405 5.26448 5.27897 5.30574 5.33538 5.36773 5.40659 5.52719 5.61454 5.65451 5.67413 5.79637 5.80230 5.86739 5.89514 6.00499 6.01973 6.06881 6.09551 6.19558 6.40876 6.48498 6.71820 6.85918 7.02113 7.40864 7.47678 7.53676 7.86919 8.29541 8.60393 9.06328 9.64747 11.14755 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.032244 B = 0.002592 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.157738 B =10801.689520 C =11210.106197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.089 4.089 4 H 0.069 0.931 5 C -0.115 4.115 6 C -0.119 4.119 7 C -0.131 4.131 8 C 0.145 3.855 9 H 0.086 0.914 10 N -0.730 5.730 11 C 0.512 3.488 12 O -0.538 6.538 13 C -0.140 4.140 14 C -0.105 4.105 15 C -0.102 4.102 16 C -0.016 4.016 17 C -0.519 4.519 18 H 0.071 0.929 19 C 0.064 3.936 20 N -0.906 5.906 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.264 1.264 25 C -0.122 4.122 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.397 0.603 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.015 0.985 45 H 0.011 0.989 46 H 0.262 0.738 47 H 0.076 0.924 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.842 -24.193 19.329 31.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.107 4.107 4 H 0.087 0.913 5 C -0.152 4.152 6 C -0.156 4.156 7 C -0.169 4.169 8 C 0.041 3.959 9 H 0.104 0.896 10 N -0.384 5.384 11 C 0.300 3.700 12 O -0.415 6.415 13 C -0.180 4.180 14 C -0.143 4.143 15 C -0.140 4.140 16 C -0.053 4.053 17 C -0.557 4.557 18 H 0.089 0.911 19 C -0.137 4.137 20 N -0.546 5.546 21 Si 0.707 3.293 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.189 1.189 25 C -0.160 4.160 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.233 0.767 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.034 0.966 45 H 0.029 0.971 46 H 0.072 0.928 47 H 0.095 0.905 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.035 -23.775 19.556 31.370 hybrid contribution 0.390 0.239 0.071 0.462 sum -5.645 -23.536 19.627 31.161 Atomic orbital electron populations 1.21827 0.95830 1.01546 1.02023 1.21566 0.95982 0.96137 1.02009 1.21196 0.95135 0.96082 0.98335 0.91262 1.21651 1.00689 0.95720 0.97167 1.21501 0.95667 0.96566 1.01899 1.21918 0.96189 1.01737 0.97101 1.20875 0.98737 0.90544 0.85775 0.89604 1.46221 1.26137 1.31299 1.34758 1.21055 0.84748 0.79912 0.84325 1.90689 1.22634 1.66354 1.61774 1.21775 1.01280 0.98937 0.95988 1.21471 0.98228 0.95188 0.99450 1.21478 0.99401 0.97684 0.95449 1.19578 0.95180 0.93744 0.96797 1.21188 1.08440 1.11889 1.14143 0.91122 1.25046 0.97654 0.96282 0.94678 1.69924 1.39505 1.20497 1.24650 0.86769 0.84404 0.77584 0.80521 1.20326 1.21473 1.18893 1.21884 0.95677 0.95557 1.02852 0.92472 0.92677 0.92918 0.91966 0.92004 0.91741 0.92000 0.91848 0.92090 0.91325 0.91344 0.76750 0.89124 0.89142 0.91854 0.91853 0.92906 0.92882 0.96638 0.97069 0.92838 0.90527 0.91269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.67 37.15 0.36 -0.42 16 2 C -0.12 -0.61 5.40 -26.73 -0.14 -0.76 16 3 C -0.09 -0.50 2.02 -90.62 -0.18 -0.68 16 4 H 0.07 0.40 6.51 -51.93 -0.34 0.06 16 5 C -0.11 -0.68 4.96 -26.73 -0.13 -0.81 16 6 C -0.12 -0.88 5.77 -26.73 -0.15 -1.03 16 7 C -0.13 -1.15 5.60 -26.73 -0.15 -1.30 16 8 C 0.15 1.30 2.78 -67.93 -0.19 1.11 16 9 H 0.09 0.94 7.58 -51.93 -0.39 0.55 16 10 N -0.73 -7.00 4.23 -53.81 -0.23 -7.22 16 11 C 0.51 6.84 7.79 -10.99 -0.09 6.76 16 12 O -0.54 -9.43 15.64 5.56 0.09 -9.35 16 13 C -0.14 -1.80 5.70 -27.89 -0.16 -1.95 16 14 C -0.11 -1.80 4.50 -26.73 -0.12 -1.93 16 15 C -0.10 -2.05 5.15 -26.72 -0.14 -2.19 16 16 C -0.02 -0.39 4.04 -27.88 -0.11 -0.50 16 17 C -0.52 -15.23 9.66 -34.44 -0.33 -15.56 16 18 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 19 C 0.06 1.92 5.47 -17.82 -0.10 1.83 16 20 N -0.91 -28.60 13.96 55.43 0.77 -27.83 16 21 Si 0.88 22.57 27.47 -169.99 -4.67 17.90 16 22 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.26 -6.59 6.54 56.52 0.37 -6.22 16 25 C -0.12 -0.78 4.89 -26.73 -0.13 -0.91 16 26 H 0.06 0.28 6.57 -51.93 -0.34 -0.06 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.36 6.56 -51.93 -0.34 0.02 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.51 7.60 -51.93 -0.39 0.12 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.40 2.89 6.87 -40.82 -0.28 2.61 16 38 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 41 H 0.06 1.14 8.10 -51.92 -0.42 0.72 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 45 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 46 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 47 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 368.40 15.07 5.55 5.55 Total: -1.00 -33.39 368.40 -9.46 -42.85 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -9.20 Total: -3.56 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: -1.77 Total: -18.35 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: 0.55 Total: -35.05 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.09 Total: -9.35 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.67 Total: 17.90 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.39 -9.46 -42.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588158727.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.115 kcal (2) G-P(sol) polarization free energy of solvation -33.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds