Wall clock time and date at job start Tue Mar 31 2020 05:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47203 * 2 1 4 4 H 1.08992 * 109.47514 * 305.00424 * 3 2 1 5 5 C 1.53002 * 109.46637 * 65.00295 * 3 2 1 6 6 C 1.52997 * 109.46817 * 179.97438 * 5 3 2 7 7 C 1.53005 * 109.47452 * 300.00239 * 6 5 3 8 8 C 1.52999 * 109.47159 * 59.99536 * 7 6 5 9 9 H 1.08996 * 109.46929 * 179.97438 * 8 7 6 10 10 N 1.46506 * 109.46684 * 60.00602 * 8 7 6 11 11 C 1.34773 * 120.00361 * 84.99594 * 10 8 7 12 12 O 1.21281 * 119.99841 * 0.02562 * 11 10 8 13 13 C 1.50696 * 120.00220 * 179.97438 * 11 10 8 14 14 C 1.52998 * 109.47121 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.47016 * 179.97438 * 14 13 11 16 16 C 1.53007 * 109.46894 * 180.02562 * 15 14 13 17 17 C 1.50696 * 109.47028 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00120 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00072 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99886 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 119.99810 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47010 * 90.00744 * 21 19 17 23 23 H 1.48499 * 109.46964 * 209.99840 * 21 19 17 24 24 H 1.48494 * 109.47660 * 330.00608 * 21 19 17 25 25 C 1.52997 * 109.47317 * 300.00546 * 8 7 6 26 26 H 1.09005 * 109.47243 * 300.00091 * 1 2 3 27 27 H 1.09000 * 109.47476 * 59.99602 * 1 2 3 28 28 H 1.08996 * 109.47654 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46970 * 240.00359 * 2 1 3 30 30 H 1.09000 * 109.47017 * 120.00667 * 2 1 3 31 31 H 1.08993 * 109.47662 * 299.99908 * 5 3 2 32 32 H 1.09002 * 109.47075 * 60.00414 * 5 3 2 33 33 H 1.09002 * 109.47153 * 60.00231 * 6 5 3 34 34 H 1.09001 * 109.47289 * 180.02562 * 6 5 3 35 35 H 1.09000 * 109.47360 * 180.02562 * 7 6 5 36 36 H 1.09002 * 109.46935 * 300.00125 * 7 6 5 37 37 H 0.97004 * 119.99411 * 265.00023 * 10 8 7 38 38 H 1.09001 * 109.47165 * 300.00278 * 13 11 10 39 39 H 1.08994 * 109.47084 * 60.00351 * 13 11 10 40 40 H 1.09001 * 109.47093 * 300.00035 * 14 13 11 41 41 H 1.09007 * 109.47327 * 60.00215 * 14 13 11 42 42 H 1.08993 * 109.47417 * 300.00220 * 15 14 13 43 43 H 1.09002 * 109.46965 * 60.00432 * 15 14 13 44 44 H 1.09001 * 109.47129 * 300.00024 * 16 15 14 45 45 H 1.08994 * 109.47176 * 60.00131 * 16 15 14 46 46 H 0.97006 * 119.99978 * 179.97438 * 20 19 17 47 47 H 1.09002 * 109.47153 * 299.99641 * 25 8 7 48 48 H 1.09001 * 109.46832 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 1.6352 2.1264 1.3074 6 6 2.1457 3.5687 1.3078 7 6 3.6706 3.5701 1.1822 8 6 4.0754 2.8860 -0.1251 9 1 5.1616 2.8874 -0.2147 10 7 3.4916 3.6110 -1.2565 11 6 4.1274 4.6823 -1.7708 12 8 5.1830 5.0460 -1.2972 13 6 3.5272 5.4276 -2.9349 14 6 4.4419 6.5916 -3.3214 15 6 3.8329 7.3479 -4.5038 16 6 4.7479 8.5116 -4.8908 17 6 4.1478 9.2569 -6.0549 18 1 3.2079 8.9329 -6.4769 19 6 4.7990 10.3519 -6.5820 20 7 4.2750 11.0027 -7.5976 21 14 6.4249 10.9120 -5.8525 22 1 7.5424 10.2244 -6.5480 23 1 6.5644 12.3805 -6.0235 24 1 6.4606 10.5764 -4.4065 25 6 3.5648 1.4437 -0.1255 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 0.5490 2.1251 1.3971 32 1 2.0699 1.5874 2.1492 33 1 1.7114 4.1081 0.4660 34 1 1.8578 4.0559 2.2394 35 1 4.0344 4.5976 1.1829 36 1 4.1050 3.0307 2.0240 37 1 2.6474 3.3199 -1.6355 38 1 3.4216 4.7517 -3.7835 39 1 2.5474 5.8131 -2.6533 40 1 4.5480 7.2676 -2.4730 41 1 5.4217 6.2057 -3.6033 42 1 3.7271 6.6718 -5.3521 43 1 2.8530 7.7338 -4.2224 44 1 4.8540 9.1879 -4.0426 45 1 5.7275 8.1254 -5.1723 46 1 4.7330 11.7733 -7.9682 47 1 3.9991 0.9044 0.7163 48 1 3.8528 0.9566 -1.0571 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588158727.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:03 Heat of formation + Delta-G solvation = -114.126606 kcal Electronic energy + Delta-G solvation = -22142.137315 eV Core-core repulsion = 19000.780210 eV Total energy + Delta-G solvation = -3141.357105 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.29845 -39.46375 -36.69300 -35.60898 -34.60482 -33.77702 -32.02881 -30.92697 -29.67906 -27.54923 -24.80375 -23.97198 -23.30923 -21.87270 -21.63897 -21.41357 -19.98269 -18.85079 -17.94131 -16.99785 -16.74627 -16.44761 -16.29684 -15.77393 -15.53115 -15.08741 -14.86405 -14.66238 -14.33708 -14.09817 -13.88753 -13.74505 -13.55156 -13.50394 -13.07713 -12.98180 -12.85161 -12.55549 -12.33420 -12.26440 -12.07307 -11.96596 -11.75879 -11.70695 -11.51113 -11.36404 -11.33935 -11.26513 -11.00456 -10.86801 -10.76394 -10.73291 -9.98289 -8.30046 -6.33008 1.34343 1.35812 1.48852 1.70581 2.27806 2.35619 3.05274 3.68443 3.75275 3.82195 3.89909 4.03983 4.14448 4.17112 4.21149 4.36973 4.46190 4.55040 4.57273 4.62317 4.65408 4.69290 4.76254 4.78695 4.80748 4.84522 4.86772 5.06755 5.09200 5.14796 5.15520 5.20477 5.22495 5.26132 5.28213 5.32624 5.36567 5.42256 5.51607 5.59560 5.61891 5.65363 5.65890 5.68821 6.29254 6.61469 6.74830 7.31732 7.33598 8.86542 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.032244 B = 0.002592 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.157738 B =10801.689520 C =11210.106197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.116 4.116 3 C -0.085 4.085 4 H 0.071 0.929 5 C -0.110 4.110 6 C -0.116 4.116 7 C -0.128 4.128 8 C 0.143 3.857 9 H 0.062 0.938 10 N -0.712 5.712 11 C 0.512 3.488 12 O -0.587 6.587 13 C -0.133 4.133 14 C -0.096 4.096 15 C -0.093 4.093 16 C -0.017 4.017 17 C -0.530 4.530 18 H 0.037 0.963 19 C 0.003 3.997 20 N -0.950 5.950 21 Si 0.948 3.052 22 H -0.267 1.267 23 H -0.281 1.281 24 H -0.253 1.253 25 C -0.113 4.113 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.037 0.963 36 H 0.079 0.921 37 H 0.412 0.588 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.049 0.951 41 H 0.051 0.949 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.013 0.987 45 H 0.012 0.988 46 H 0.266 0.734 47 H 0.086 0.914 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.124 -25.996 20.651 33.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.154 4.154 3 C -0.104 4.104 4 H 0.089 0.911 5 C -0.147 4.147 6 C -0.153 4.153 7 C -0.167 4.167 8 C 0.039 3.961 9 H 0.081 0.919 10 N -0.365 5.365 11 C 0.300 3.700 12 O -0.467 6.467 13 C -0.172 4.172 14 C -0.135 4.135 15 C -0.131 4.131 16 C -0.055 4.055 17 C -0.568 4.568 18 H 0.055 0.945 19 C -0.193 4.193 20 N -0.591 5.591 21 Si 0.771 3.229 22 H -0.192 1.192 23 H -0.207 1.207 24 H -0.177 1.177 25 C -0.151 4.151 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.056 0.944 36 H 0.098 0.902 37 H 0.250 0.750 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.031 0.969 45 H 0.031 0.969 46 H 0.075 0.925 47 H 0.105 0.895 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.361 -25.623 20.885 33.663 hybrid contribution 0.400 0.774 -0.361 0.943 sum -5.962 -24.849 20.524 32.776 Atomic orbital electron populations 1.21831 0.95714 1.01727 1.02013 1.21528 0.96019 0.95534 1.02277 1.21174 0.94347 0.96615 0.98253 0.91091 1.21618 1.01099 0.94488 0.97518 1.21476 0.94351 0.97759 1.01737 1.21875 0.97363 0.99982 0.97442 1.20941 0.97565 0.92147 0.85459 0.91933 1.46071 1.26184 1.29932 1.34315 1.21118 0.84195 0.80455 0.84272 1.90677 1.24814 1.67893 1.63319 1.21684 1.00995 0.97816 0.96747 1.21267 0.98462 0.96202 0.97524 1.21340 0.98607 0.96342 0.96818 1.19578 0.95990 0.95044 0.94840 1.21539 1.07456 1.12425 1.15371 0.94454 1.25995 1.01758 0.96484 0.95094 1.70061 1.41475 1.21319 1.26268 0.85692 0.79552 0.77421 0.80209 1.19193 1.20674 1.17687 1.21834 0.96285 0.93441 1.03539 0.92340 0.92832 0.92703 0.91833 0.91653 0.91012 0.91477 0.92457 0.91961 0.94379 0.90214 0.75027 0.86735 0.86881 0.93190 0.93028 0.92430 0.92507 0.96874 0.96923 0.92505 0.89512 0.90922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 9.67 71.98 0.70 -0.49 16 2 C -0.12 -0.88 5.40 30.59 0.17 -0.71 16 3 C -0.09 -0.74 2.02 -10.79 -0.02 -0.76 16 4 H 0.07 0.61 6.51 -2.39 -0.02 0.59 16 5 C -0.11 -1.03 4.96 30.59 0.15 -0.88 16 6 C -0.12 -1.53 5.77 30.60 0.18 -1.35 16 7 C -0.13 -2.15 5.60 30.60 0.17 -1.98 16 8 C 0.14 2.42 2.78 44.99 0.13 2.54 16 9 H 0.06 1.38 7.58 -2.39 -0.02 1.36 16 10 N -0.71 -12.53 4.23 -442.54 -1.87 -14.41 16 11 C 0.51 13.14 7.79 87.66 0.68 13.82 16 12 O -0.59 -20.71 15.64 -3.03 -0.05 -20.76 16 13 C -0.13 -3.13 5.70 29.85 0.17 -2.96 16 14 C -0.10 -3.21 4.50 30.60 0.14 -3.07 16 15 C -0.09 -3.65 5.15 30.60 0.16 -3.49 16 16 C -0.02 -0.84 4.04 29.85 0.12 -0.72 16 17 C -0.53 -31.54 9.66 25.60 0.25 -31.30 16 18 H 0.04 2.40 7.99 -2.91 -0.02 2.37 16 19 C 0.00 0.20 5.47 84.65 0.46 0.66 16 20 N -0.95 -60.92 13.96 21.45 0.30 -60.62 16 21 Si 0.95 46.43 27.47 68.60 1.88 48.31 16 22 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 23 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 24 H -0.25 -11.84 6.54 99.48 0.65 -11.19 16 25 C -0.11 -1.20 4.89 30.59 0.15 -1.05 16 26 H 0.06 0.43 6.57 -2.38 -0.02 0.41 16 27 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.07 0.61 6.56 -2.39 -0.02 0.59 16 32 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.06 0.83 7.60 -2.39 -0.02 0.81 16 34 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.41 4.93 6.87 -92.71 -0.64 4.30 16 38 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.05 1.78 8.10 -2.39 -0.02 1.76 16 41 H 0.05 1.83 8.10 -2.38 -0.02 1.81 16 42 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.01 0.64 7.20 -2.39 -0.02 0.63 16 45 H 0.01 0.61 7.57 -2.39 -0.02 0.59 16 46 H 0.27 15.88 8.31 -92.70 -0.77 15.11 16 47 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -73.42 368.40 4.06 -69.35 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 0.21 Total: 9.86 kcal Atomic # 6 Polarization: -35.33 SS G_CDS: 3.59 Total: -31.74 kcal Atomic # 7 Polarization: -73.46 SS G_CDS: -1.57 Total: -75.03 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.05 Total: -20.76 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 1.88 Total: 48.31 kcal Total: -73.42 4.06 -69.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588158727.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.773 kcal (2) G-P(sol) polarization free energy of solvation -73.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds